BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00003702
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317630.1| predicted protein [Populus trichocarpa] gi|3...   114   1e-23
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...   112   4e-23
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...   110   9e-23
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...   108   6e-22
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ...   106   2e-21

>ref|XP_002317630.1| predicted protein [Populus trichocarpa]
           gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 [Glycine max] gi|222860695|gb|EEE98242.1|
           predicted protein [Populus trichocarpa]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
          Length = 51

 Score =  114 bits (284), Expect = 1e-23
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = +3

Query: 111 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 263
           MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score =  112 bits (279), Expect = 4e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +3

Query: 111 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 263
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score =  110 bits (276), Expect = 9e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +3

Query: 111 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 263
           MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score =  108 bits (269), Expect = 6e-22
 Identities = 53/65 (81%), Positives = 56/65 (86%), Gaps = 2/65 (3%)
 Frame = +3

Query: 75  RTVFRHRSPE-PVMDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 248
           RT  R ++ E   MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIV
Sbjct: 36  RTTCRRKTLERSTMDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIV 95

Query: 249 QYEAR 263
           QYEAR
Sbjct: 96  QYEAR 100


>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
           [Medicago truncatula] gi|355484947|gb|AES66150.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC4 [Medicago truncatula]
          Length = 121

 Score =  106 bits (264), Expect = 2e-21
 Identities = 47/52 (90%), Positives = 50/52 (96%)
 Frame = +3

Query: 108 VMDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 263
           VMDP PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 13  VMDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 64



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
 Frame = +3

Query: 63  KKKARTVFRHRSP---EPVMDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKR 233
           KK+ R + ++ +    +P MDP P+P+ Y+CGDCG E  L    V+QC  C Y+ILYKKR
Sbjct: 52  KKRTRRIVQYEARLLLKPDMDPPPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKR 111

Query: 234 TRRIVQYEAR 263
           T R++QYEAR
Sbjct: 112 THRVLQYEAR 121