BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00003701
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317630.1| predicted protein [Populus trichocarpa] gi|3...   112   4e-23
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...   110   2e-22
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...   108   3e-22
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ...   105   4e-21
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...   104   8e-21

>ref|XP_002317630.1| predicted protein [Populus trichocarpa]
           gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 [Glycine max] gi|222860695|gb|EEE98242.1|
           predicted protein [Populus trichocarpa]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
          Length = 51

 Score =  112 bits (279), Expect = 4e-23
 Identities = 50/50 (100%), Positives = 50/50 (100%)
 Frame = -1

Query: 324 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 175
           MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50


>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score =  110 bits (274), Expect = 2e-22
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -1

Query: 324 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 175
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score =  108 bits (271), Expect = 3e-22
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -1

Query: 324 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 175
           MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEA
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEA 50


>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
           [Medicago truncatula] gi|355484947|gb|AES66150.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC4 [Medicago truncatula]
          Length = 121

 Score =  105 bits (262), Expect = 4e-21
 Identities = 46/54 (85%), Positives = 51/54 (94%)
 Frame = -1

Query: 336 LVPIMDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 175
           +V +MDP PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEA
Sbjct: 10  IVGVMDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEA 63



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 32/54 (59%), Positives = 39/54 (72%)
 Frame = -1

Query: 336 LVPIMDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 175
           L P MDP P+P+ Y+CGDCG E  L    V+QC  C Y+ILYKKRT R++QYEA
Sbjct: 67  LKPDMDPPPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRTHRVLQYEA 120


>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score =  104 bits (259), Expect = 8e-21
 Identities = 48/51 (94%), Positives = 49/51 (96%), Gaps = 1/51 (1%)
 Frame = -1

Query: 324 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 175
           MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA
Sbjct: 49  MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 99