BLASTX nr result

ID: Glycyrrhiza23_contig00003671 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00003671
         (982 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539020.1| PREDICTED: SWI/SNF complex subunit SWI3D-lik...   234   2e-59
ref|XP_003606885.1| SWI/SNF complex subunit SMARCC1 [Medicago tr...   231   2e-58
ref|XP_003540680.1| PREDICTED: SWI/SNF complex subunit SWI3D-lik...   230   3e-58
ref|XP_002313800.1| chromatin remodeling complex subunit [Populu...   187   4e-45
ref|XP_002509474.1| Transcription regulatory protein SWI3, putat...   185   1e-44

>ref|XP_003539020.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Glycine max]
          Length = 1018

 Score =  234 bits (598), Expect = 2e-59
 Identities = 122/158 (77%), Positives = 133/158 (84%)
 Frame = +3

Query: 3    VSTXXXXXXXXXXXXNEEEDQIRQLTSSLIEKQLHKLETKLAFFNDMENVVMRVREHLER 182
            VST            N+EEDQIRQLTS LIEKQLHKLETKLAFFND+ENVVMR REH+ER
Sbjct: 862  VSTLAAAAAKAKLLANQEEDQIRQLTSLLIEKQLHKLETKLAFFNDVENVVMRAREHVER 921

Query: 183  SRHKLYHERAMIIASRLGLPASSSRGVPPSVPTNRIPMNFANSLPRPQIIMNPQRPLISR 362
            SRHKLYHERA+IIASRLG+P SSSRGVPPS+ TNRIP N ANSLPRPQ++MNP RPLISR
Sbjct: 922  SRHKLYHERALIIASRLGIPPSSSRGVPPSITTNRIPTNIANSLPRPQMMMNPPRPLISR 981

Query: 363  PVMSTVATTLPNQLTSATAAGNSVQPSSQEKLSSVGTK 476
            P   TVATTL N L S+TAAGNSV+PS+QEKLSSVGTK
Sbjct: 982  PA-GTVATTLQNPLVSSTAAGNSVRPSNQEKLSSVGTK 1018


>ref|XP_003606885.1| SWI/SNF complex subunit SMARCC1 [Medicago truncatula]
            gi|355507940|gb|AES89082.1| SWI/SNF complex subunit
            SMARCC1 [Medicago truncatula]
          Length = 1041

 Score =  231 bits (590), Expect = 2e-58
 Identities = 122/158 (77%), Positives = 135/158 (85%)
 Frame = +3

Query: 3    VSTXXXXXXXXXXXXNEEEDQIRQLTSSLIEKQLHKLETKLAFFNDMENVVMRVREHLER 182
            VST            N+EEDQIR+LTS+LIEKQLHKLETKLAFFNDME++VMRV+E L+R
Sbjct: 885  VSTLAAAAVKAKVLANQEEDQIRELTSALIEKQLHKLETKLAFFNDMEHLVMRVKELLDR 944

Query: 183  SRHKLYHERAMIIASRLGLPASSSRGVPPSVPTNRIPMNFANSLPRPQIIMNPQRPLISR 362
            SRHKLYHERAMII+SRLG+PASSSRGVPPS+PTNRIPMNFANSL RPQ  MNPQ PLISR
Sbjct: 945  SRHKLYHERAMIISSRLGVPASSSRGVPPSIPTNRIPMNFANSLQRPQFNMNPQGPLISR 1004

Query: 363  PVMSTVATTLPNQLTSATAAGNSVQPSSQEKLSSVGTK 476
            P  ST ATTLPN L SATAAG+SV+PSSQE LSSVGT+
Sbjct: 1005 P-GSTAATTLPNPLMSATAAGSSVRPSSQENLSSVGTE 1041


>ref|XP_003540680.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Glycine max]
          Length = 1016

 Score =  230 bits (587), Expect = 3e-58
 Identities = 121/158 (76%), Positives = 133/158 (84%)
 Frame = +3

Query: 3    VSTXXXXXXXXXXXXNEEEDQIRQLTSSLIEKQLHKLETKLAFFNDMENVVMRVREHLER 182
            VST            N+EEDQIRQLTS LIEKQLHKLETKLAFFND+ENVVMR REH+ER
Sbjct: 861  VSTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLHKLETKLAFFNDVENVVMRAREHVER 920

Query: 183  SRHKLYHERAMIIASRLGLPASSSRGVPPSVPTNRIPMNFANSLPRPQIIMNPQRPLISR 362
            SRHKLYHERA+IIASRLG+P SSSRGVPPS+PTNRIP N ANSLPRPQ++MNP RPLISR
Sbjct: 921  SRHKLYHERALIIASRLGIPPSSSRGVPPSIPTNRIPTNIANSLPRPQMMMNPPRPLISR 980

Query: 363  PVMSTVATTLPNQLTSATAAGNSVQPSSQEKLSSVGTK 476
            P   TVA T+ N LT +TAAGNSV+PS+QEKLSSVGTK
Sbjct: 981  PA-GTVA-TIQNPLTPSTAAGNSVRPSNQEKLSSVGTK 1016


>ref|XP_002313800.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222850208|gb|EEE87755.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1010

 Score =  187 bits (474), Expect = 4e-45
 Identities = 98/143 (68%), Positives = 115/143 (80%)
 Frame = +3

Query: 48   NEEEDQIRQLTSSLIEKQLHKLETKLAFFNDMENVVMRVREHLERSRHKLYHERAMIIAS 227
            N+EEDQIRQL +SLIEKQLHKLE KLAFFN+M++V+MRVRE L+RSR +LY ERA IIAS
Sbjct: 870  NQEEDQIRQLAASLIEKQLHKLEMKLAFFNEMDSVIMRVREQLDRSRQRLYQERAQIIAS 929

Query: 228  RLGLPASSSRGVPPSVPTNRIPMNFANSLPRPQIIMNPQRPLISRPVMSTVATTLPNQLT 407
            RLGLP  SSR VPPS+P NRI MNFAN+ PRP + M  QRP ISRP M  +A T    ++
Sbjct: 930  RLGLP-PSSRAVPPSLPANRIAMNFANAFPRPPMSMTAQRPPISRP-MGALAPTPDTLVS 987

Query: 408  SATAAGNSVQPSSQEKLSSVGTK 476
            + T AGNS++PS QEKLSSVGTK
Sbjct: 988  TTTTAGNSIRPSGQEKLSSVGTK 1010


>ref|XP_002509474.1| Transcription regulatory protein SWI3, putative [Ricinus communis]
            gi|223549373|gb|EEF50861.1| Transcription regulatory
            protein SWI3, putative [Ricinus communis]
          Length = 983

 Score =  185 bits (470), Expect = 1e-44
 Identities = 93/143 (65%), Positives = 118/143 (82%)
 Frame = +3

Query: 48   NEEEDQIRQLTSSLIEKQLHKLETKLAFFNDMENVVMRVREHLERSRHKLYHERAMIIAS 227
            N+EEDQIRQL +SLIEKQLHKLETKL+FFN+M++++MRVRE L++SR +LYHERA IIA+
Sbjct: 843  NQEEDQIRQLAASLIEKQLHKLETKLSFFNEMDHIIMRVREQLDKSRQRLYHERAQIIAT 902

Query: 228  RLGLPASSSRGVPPSVPTNRIPMNFANSLPRPQIIMNPQRPLISRPVMSTVATTLPNQLT 407
            RLG+P SSSR +PP++PTNRI MN ANS+PRP + MN QRP ISRP M  +A  +P+   
Sbjct: 903  RLGIPPSSSRAMPPTLPTNRIAMNIANSIPRPPVNMNSQRPPISRP-MGALA-PIPSNPF 960

Query: 408  SATAAGNSVQPSSQEKLSSVGTK 476
             +T AGNS++PS Q+ LSSV TK
Sbjct: 961  VSTTAGNSIRPSGQDNLSSVVTK 983


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