BLASTX nr result

ID: Glycyrrhiza23_contig00003538 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00003538
         (1071 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1...   283   4e-74
ref|XP_003535759.1| PREDICTED: hippocampus abundant transcript 1...   283   4e-74
ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1...   203   7e-50
ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1...   203   7e-50
ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|2...   196   1e-47

>ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine
            max]
          Length = 443

 Score =  283 bits (725), Expect = 4e-74
 Identities = 135/162 (83%), Positives = 152/162 (93%)
 Frame = -2

Query: 1070 MITGIGATLSQLFFMPILVPAIGEEKLLTTGLLVSCINIFIYSISWASWVPYALAGCSIF 891
            MITGIGATL+QLFFMPILVP IGEEKLL+TGLL+SCIN+F+YSI+W +WVPYALAGCS+F
Sbjct: 282  MITGIGATLAQLFFMPILVPVIGEEKLLSTGLLISCINVFVYSIAWTAWVPYALAGCSVF 341

Query: 890  GVFVRPTICSIASKQVGPNEQGMVQGCLSGITSIANIISPLIFSPLTALFLSEQAPFNFP 711
             VFVRP++CSIASKQVGP EQGMVQGCLS I+S ANII+PLIFSPLTALFLSE+APF FP
Sbjct: 342  AVFVRPSLCSIASKQVGPTEQGMVQGCLSAISSFANIIAPLIFSPLTALFLSEEAPFYFP 401

Query: 710  GFSILCLGLILMVAFFLSLMIRAVPPIAGGKTSSNRCTETLV 585
            GFS++CLGL LMVAFF SL+IRAVPPIAGGK SSNRCT+TLV
Sbjct: 402  GFSLMCLGLALMVAFFQSLIIRAVPPIAGGKISSNRCTDTLV 443


>ref|XP_003535759.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine
            max]
          Length = 443

 Score =  283 bits (725), Expect = 4e-74
 Identities = 135/162 (83%), Positives = 151/162 (93%)
 Frame = -2

Query: 1070 MITGIGATLSQLFFMPILVPAIGEEKLLTTGLLVSCINIFIYSISWASWVPYALAGCSIF 891
            MITGIGATL+QLFFMPILVP IGEEKLL+TGLL+SCIN+F+YSI+W +WVPYALAGCS+F
Sbjct: 282  MITGIGATLAQLFFMPILVPVIGEEKLLSTGLLISCINVFVYSIAWTAWVPYALAGCSVF 341

Query: 890  GVFVRPTICSIASKQVGPNEQGMVQGCLSGITSIANIISPLIFSPLTALFLSEQAPFNFP 711
             VFVRP++CSIASKQVGP EQGMVQGCLS I+S ANII+PLIFSPLTALFLSE+APF FP
Sbjct: 342  AVFVRPSLCSIASKQVGPTEQGMVQGCLSAISSFANIIAPLIFSPLTALFLSEEAPFYFP 401

Query: 710  GFSILCLGLILMVAFFLSLMIRAVPPIAGGKTSSNRCTETLV 585
            GFS++CLGL LMVAFF SLMIRAVPPIAGGK S NRCT+TLV
Sbjct: 402  GFSLMCLGLALMVAFFQSLMIRAVPPIAGGKISGNRCTDTLV 443


>ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera]
            gi|302141709|emb|CBI18912.3| unnamed protein product
            [Vitis vinifera]
          Length = 442

 Score =  203 bits (516), Expect = 7e-50
 Identities = 101/159 (63%), Positives = 121/159 (76%)
 Frame = -2

Query: 1070 MITGIGATLSQLFFMPILVPAIGEEKLLTTGLLVSCINIFIYSISWASWVPYALAGCSIF 891
            MI+GI  T+SQL  MPIL P IGEEKLL  GLL SC ++F+YSI+W+ WVPYA A  SI 
Sbjct: 283  MISGIAGTISQLVLMPILAPTIGEEKLLAIGLLFSCSHMFLYSIAWSFWVPYAAAMFSIL 342

Query: 890  GVFVRPTICSIASKQVGPNEQGMVQGCLSGITSIANIISPLIFSPLTALFLSEQAPFNFP 711
             VF  P I SIASKQVGP+EQG VQGC+SGI+S A+++SPL F+PLTALFLS+ APFNFP
Sbjct: 343  IVFAPPCIRSIASKQVGPSEQGKVQGCISGISSFAHLVSPLAFTPLTALFLSDGAPFNFP 402

Query: 710  GFSILCLGLILMVAFFLSLMIRAVPPIAGGKTSSNRCTE 594
            GFSI+C+G   M+AF  SL IRA PPI+  K  +   TE
Sbjct: 403  GFSIMCIGFASMIAFLQSLTIRAAPPISNKKVGNCSYTE 441


>ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera]
            gi|297744560|emb|CBI37822.3| unnamed protein product
            [Vitis vinifera]
          Length = 439

 Score =  203 bits (516), Expect = 7e-50
 Identities = 97/155 (62%), Positives = 119/155 (76%)
 Frame = -2

Query: 1070 MITGIGATLSQLFFMPILVPAIGEEKLLTTGLLVSCINIFIYSISWASWVPYALAGCSIF 891
            +I G+  T+SQL FMP+L P + EEKLL+ GL + C NIF+ SI+W+ WVPYA+A  + F
Sbjct: 282  LIVGVMGTISQLLFMPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAF 341

Query: 890  GVFVRPTICSIASKQVGPNEQGMVQGCLSGITSIANIISPLIFSPLTALFLSEQAPFNFP 711
             VF  P + SIASKQVGPNEQG  QGC+SGI+S A IISPLIFSPLTALFLS+ APF FP
Sbjct: 342  AVFANPCVRSIASKQVGPNEQGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFP 401

Query: 710  GFSILCLGLILMVAFFLSLMIRAVPPIAGGKTSSN 606
            GFSI+C+G   M+AF  S MIRAVPPI+   TS++
Sbjct: 402  GFSIMCIGFASMIAFIQSTMIRAVPPISSQPTSNS 436


>ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1|
            predicted protein [Populus trichocarpa]
          Length = 447

 Score =  196 bits (497), Expect = 1e-47
 Identities = 94/155 (60%), Positives = 117/155 (75%)
 Frame = -2

Query: 1070 MITGIGATLSQLFFMPILVPAIGEEKLLTTGLLVSCINIFIYSISWASWVPYALAGCSIF 891
            +ITGI  TLSQL  MPIL PA+GE +LL  GL  +C+++F+YSI+W  WVPY  A  S+ 
Sbjct: 288  VITGIAGTLSQLVLMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVAAMFSVL 347

Query: 890  GVFVRPTICSIASKQVGPNEQGMVQGCLSGITSIANIISPLIFSPLTALFLSEQAPFNFP 711
             VF +P + SI SKQVG  EQG  QGC+SGI+S AN+ISPL+FSPLTALFLSE+APF+FP
Sbjct: 348  IVFSQPCMRSIVSKQVGSCEQGKAQGCISGISSFANVISPLLFSPLTALFLSERAPFHFP 407

Query: 710  GFSILCLGLILMVAFFLSLMIRAVPPIAGGKTSSN 606
            GFSI+C+G   M+AF  SLMIR  PPIA  K  ++
Sbjct: 408  GFSIMCVGFASMIAFIQSLMIRIAPPIANEKVCNS 442


Top