BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00003499
         (1108 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   364   2e-98
ref|XP_003592708.1| Pentatricopeptide repeat protein-like protei...   360   3e-97
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   268   2e-69
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...   261   2e-67
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   258   2e-66

>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  364 bits (935), Expect = 2e-98
 Identities = 175/219 (79%), Positives = 197/219 (89%)
 Frame = +3

Query: 3    GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
            G CPDVVA N+L+RGL KA R  EAE LLDE+V +G  PSVVTYNL IDSWCKNG+VDKA
Sbjct: 602  GHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKA 661

Query: 183  MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
            MA+LSRMS +DREPNVITY+TLVDG CR +RPDDALLVWNEMERKGC PN+IAFMALIYG
Sbjct: 662  MALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYG 721

Query: 363  LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
            LC+CCRPT AL YLREMEQK+MKPD+FIYIAL+S+FLSD++L SAFEIF+EMV SG+FP+
Sbjct: 722  LCKCCRPTTALHYLREMEQKDMKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSGYFPE 781

Query: 543  SHDKNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPTHC 659
            SHDKNYSI +DAI KFSKDHRTSSGIQVLM EGK+PTHC
Sbjct: 782  SHDKNYSIVMDAIDKFSKDHRTSSGIQVLMEEGKLPTHC 820



 Score = 74.3 bits (181), Expect = 5e-11
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 3/223 (1%)
 Frame = +3

Query: 12   PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
            P V+ +N LI  L  +NR  E+  LL E+   G+ P+  TYN      CK   V  A+ +
Sbjct: 465  PSVLIYNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDM 524

Query: 192  LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
            L  M     EP +   T LV  LC      +A    + M ++G  P+ +++ A I GL +
Sbjct: 525  LKGMRACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQ 584

Query: 372  CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHD 551
                  AL    ++  +   PD      L+        +  A ++  E+V  GFFP    
Sbjct: 585  IQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSV-- 642

Query: 552  KNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIP---THCELVE 671
              Y++ +D+  K     +  + +  + GE + P   T+  LV+
Sbjct: 643  VTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVD 685



 Score = 68.6 bits (166), Expect = 3e-09
 Identities = 47/176 (26%), Positives = 79/176 (44%)
 Frame = +3

Query: 12  PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
           P+  +F+++I GL K ++   A SL +++      PSV+ YN  I+S C +  ++++  +
Sbjct: 430 PNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESREL 489

Query: 192 LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
           L  M E   EP   TY ++   LC+ K    A+ +   M   G  P       L+  LC 
Sbjct: 490 LREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCD 549

Query: 372 CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFP 539
                 A  +L  M Q+   PD   Y A +   +    L  A ++F ++   G  P
Sbjct: 550 HGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCP 605



 Score = 67.0 bits (162), Expect = 8e-09
 Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 1/210 (0%)
 Frame = +3

Query: 24  AFNVLIRGLNKANRFTEAESLLDELVARGLS-PSVVTYNLFIDSWCKNGAVDKAMAVLSR 200
           A   LIR L  A    EA  L DE+  +GL  P+   YN  +++  K+G VD   A L  
Sbjct: 139 ALGFLIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEE 198

Query: 201 MSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCR 380
           M     E +  T T L+   C  +R D+AL V+N M  KG     +  M L     +   
Sbjct: 199 MKGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHVCSM-LALSFSKWGD 257

Query: 381 PTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHDKNY 560
              A   +  ME   M+ +   +  L+  F+ +  +  A ++F  M   GF P      +
Sbjct: 258 VDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPV--SLF 315

Query: 561 SIAVDAILKFSKDHRTSSGIQVLMGEGKIP 650
            + +  + +    HR  S +  +   G  P
Sbjct: 316 DVLIGGLCRNGDSHRALSLLSEMKEFGVTP 345



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 51/152 (33%), Positives = 73/152 (48%)
 Frame = +3

Query: 15  DVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVL 194
           D      L++    A RF EA  + + +  +G     V   L + S+ K G VDKA  ++
Sbjct: 207 DKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHVCSMLAL-SFSKWGDVDKAFELV 265

Query: 195 SRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRC 374
            RM       N  T+  L+ G  +E R D AL +++ M R G  P    F  LI GLCR 
Sbjct: 266 ERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRN 325

Query: 375 CRPTAALTYLREMEQKEMKPDAFIYIALLSAF 470
                AL+ L EM++  + PD  I+  L+SAF
Sbjct: 326 GDSHRALSLLSEMKEFGVTPDVGIFTKLISAF 357


>ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
            gi|355481756|gb|AES62959.1| Pentatricopeptide repeat
            protein-like protein [Medicago truncatula]
          Length = 1430

 Score =  360 bits (925), Expect = 3e-97
 Identities = 173/225 (76%), Positives = 196/225 (87%)
 Frame = +3

Query: 3    GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
            G CPDVV FNVLIRGL K NRFTEAE L  ELV RGLSPSVVTYNLFID WCKNG VDKA
Sbjct: 596  GHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVVTYNLFIDCWCKNGNVDKA 655

Query: 183  MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
            MA L RM+++D+ P+V+TYTTLVDG C+E+RPDDA+L++ EME+ GCPPN+I FMALIYG
Sbjct: 656  MAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFMALIYG 715

Query: 363  LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
            LC+CCRPT AL YLREM+QKEMKPD+FIY+ALLSA+LSDLNLTSAFEIFREMVD GFFPK
Sbjct: 716  LCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSAFEIFREMVDLGFFPK 775

Query: 543  SHDKNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPTHCELVEVK 677
              DKNY   VDAILKF KD RTSSGIQVL+ EGK+P HCEL+E++
Sbjct: 776  PLDKNYPTVVDAILKFCKDDRTSSGIQVLIEEGKLPMHCELLELR 820



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 49/176 (27%), Positives = 84/176 (47%)
 Frame = +3

Query: 12  PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
           P++ +F+++I G  K ++   A SL +++      P+++ YN  IDS CK+  ++K+  +
Sbjct: 424 PNITSFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYEL 483

Query: 192 LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
           L  M E   EP   TY ++   LC+ K    A ++  EM   G  P       L+  LC 
Sbjct: 484 LREMKELGIEPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCD 543

Query: 372 CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFP 539
             R   A  +L  M Q+   PD   Y A +   ++   +  A +IF+++   G  P
Sbjct: 544 HGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHGHCP 599



 Score = 74.3 bits (181), Expect = 5e-11
 Identities = 54/214 (25%), Positives = 91/214 (42%)
 Frame = +3

Query: 12   PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
            P ++ +N LI  L K+NR  ++  LL E+   G+ P+  TYN      CK   V  A  +
Sbjct: 459  PTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGCLCKRKDVSAACVM 518

Query: 192  LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
            L  M      P +   T LV  LC   R  +A    + M ++G  P+ +++ A I GL  
Sbjct: 519  LKEMGSCGHGPWIKHTTLLVKELCDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVN 578

Query: 372  CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHD 551
                  A+   +++      PD   +  L+         T A ++F E+V  G  P    
Sbjct: 579  IQEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSV-- 636

Query: 552  KNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
              Y++ +D   K     +  + +  +  E K+P+
Sbjct: 637  VTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPS 670



 Score = 64.3 bits (155), Expect = 5e-08
 Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 4/209 (1%)
 Frame = +3

Query: 36   LIRGLNKANRFTEA-ESLLD---ELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVLSRM 203
            LIR + ++   T++ E+ +D   + V R + P++ ++++ ID + KN  +D A+++ + M
Sbjct: 393  LIRMMIQSKSSTDSDENRMDVFFKTVKRMVFPNITSFSIVIDGFLKNDQLDLALSLFNDM 452

Query: 204  SEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRP 383
                 +P ++ Y  L+D LC+  R + +  +  EM+  G  P    + ++   LC+    
Sbjct: 453  RRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGCLCKRKDV 512

Query: 384  TAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHDKNYS 563
            +AA   L+EM      P       L+        +  A E    M   GF P     +YS
Sbjct: 513  SAACVMLKEMGSCGHGPWIKHTTLLVKELCDHGRVIEACEFLDNMTQQGFLPDI--VSYS 570

Query: 564  IAVDAILKFSKDHRTSSGIQVLMGEGKIP 650
             A+  ++   +        + L   G  P
Sbjct: 571  AAIGGLVNIQEVDHAMKIFKDLWSHGHCP 599



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 5/197 (2%)
 Frame = +3

Query: 51  NKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVLSRMSEQDR-EPN 227
           +K     +A  L++ +   G+  S  T+ + I  + K   VDKA+ +  +M  +D   P+
Sbjct: 241 SKLGEVDKAFELVERMGECGMRLSEKTFCVLIHGFVKESRVDKALQLFDKMRREDSFTPD 300

Query: 228 VITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRPTAALTYLR 407
           V  Y  L+ GLC+ K  D A+ +++EM+  G  P+    + ++  L  C   + ++    
Sbjct: 301 VSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPD----IGILTKLISCFSDSKSMVSRL 356

Query: 408 EMEQKEMKPD----AFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHDKNYSIAVD 575
             E  E + D      IY ALL+ +++D  +  A+ + R M+ S     S +    +   
Sbjct: 357 LEEIPEGEEDEQTLVLIYNALLTCYVNDGLMDEAYRLIRMMIQSKSSTDSDENRMDVFFK 416

Query: 576 AILKFSKDHRTSSGIQV 626
            + +    + TS  I +
Sbjct: 417 TVKRMVFPNITSFSIVI 433


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  268 bits (685), Expect = 2e-69
 Identities = 125/217 (57%), Positives = 164/217 (75%)
 Frame = +3

Query: 3    GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
            G CPDV+A+N+L++GL +A+R  EA +L +E+V +GL PSVVTYNL ID WCKNG +D A
Sbjct: 401  GRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDA 460

Query: 183  MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
            M  L  MS ++REPNV TYTTL+DGLC+  RPDDA+++WNEM R+GC PNR+AFM  I+G
Sbjct: 461  MNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHG 520

Query: 363  LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
            LC+C +P AAL +  EME++EM+PD ++YI+L+SAF++  N   AFEI ++MVD   FP 
Sbjct: 521  LCKCDKPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNISNFPMAFEILKKMVDRRNFPD 580

Query: 543  SHDKNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
              DKN  I  DAILK SKD RTSS ++ L+  G IPT
Sbjct: 581  PLDKNCIIIRDAILKLSKDARTSSSVKSLIASGSIPT 617



 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 59/195 (30%), Positives = 89/195 (45%)
 Frame = +3

Query: 3   GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
           GC  D++ +N LI GL  ++R  E+  LL E+   G  P+  T N      CK   V  A
Sbjct: 261 GCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGA 320

Query: 183 MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
           + ++ +M     EP V  YT LV  LC+  +  +A +   +M ++G PPN IA+ AL+ G
Sbjct: 321 LDLVKKMRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGG 380

Query: 363 LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
           L        AL   +++  +   PD   Y  L+           A  +F EMV  G  P 
Sbjct: 381 LIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPS 440

Query: 543 SHDKNYSIAVDAILK 587
                Y++ +D   K
Sbjct: 441 V--VTYNLLIDGWCK 453



 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 53/179 (29%), Positives = 86/179 (48%)
 Frame = +3

Query: 3   GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
           GC P V  + +L+R L K  +  EA   L ++V  G  P+++ Y+  +    +   VD+A
Sbjct: 331 GCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQA 390

Query: 183 MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
           + +   +S + R P+VI Y  L+ GL    R ++A  ++NEM  KG  P+ + +  LI G
Sbjct: 391 LKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDG 450

Query: 363 LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFP 539
            C+      A+  L  M  KE +P+ F Y  L+           A  ++ EM   G  P
Sbjct: 451 WCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRP 509



 Score = 73.6 bits (179), Expect = 8e-11
 Identities = 47/214 (21%), Positives = 98/214 (45%)
 Frame = +3

Query: 12  PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
           P+  +F+++I GL +A +   A  L  ++   G +  ++ YN  I+  C +  ++++  +
Sbjct: 229 PNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKL 288

Query: 192 LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
           L  M E   +P   T  ++   LC+ +    AL +  +M   GC P    +  L+  LC+
Sbjct: 289 LKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLCK 348

Query: 372 CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHD 551
             +   A  +L +M Q+   P+   Y ALL   +    +  A ++F+++   G  P    
Sbjct: 349 HGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDV-- 406

Query: 552 KNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
             Y+I +  + +  +     +    ++ +G IP+
Sbjct: 407 IAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPS 440



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 40/149 (26%), Positives = 77/149 (51%)
 Frame = +3

Query: 57  ANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVLSRMSEQDREPNVIT 236
           A +F EA ++ +E+   G   + V +++ + S+ K G VDK+   + +M EQ+   N  T
Sbjct: 23  AGKFDEALNVFNEIQDHGWLDAYV-FSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKT 81

Query: 237 YTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRPTAALTYLREME 416
           +  L+ G  ++ R D  + ++ +M++ G  P+   +  LI G C   +   AL+   EM+
Sbjct: 82  FCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMK 141

Query: 417 QKEMKPDAFIYIALLSAFLSDLNLTSAFE 503
             +++PD  +   L+S+F  +  L    E
Sbjct: 142 MLKIQPDIGVVSKLISSFPEEGKLIDILE 170


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
            predicted protein [Populus trichocarpa]
          Length = 726

 Score =  261 bits (668), Expect = 2e-67
 Identities = 126/217 (58%), Positives = 161/217 (74%)
 Frame = +3

Query: 3    GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
            G CPDV+A+N+LI+GL K  R  EA++LL E+  +GL PS VTYN  ID  CK   +++A
Sbjct: 494  GYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEA 553

Query: 183  MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
            M  LS M E++REPNVITY+TL++GLC   RPDDAL++WNEM RKGC P+ IA+MA I+G
Sbjct: 554  MLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHG 613

Query: 363  LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
            L  C RP  AL YLREME++EMKPD ++Y+ LL+AFL D N   AFEI +EMVD G FP 
Sbjct: 614  LSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPD 673

Query: 543  SHDKNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
             HDKN+    +AILKFS+D RTSS I+ L+ +G IP+
Sbjct: 674  LHDKNHISVRNAILKFSEDARTSSSIKNLLAKGSIPS 710



 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 51/170 (30%), Positives = 84/170 (49%)
 Frame = +3

Query: 36  LIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVLSRMSEQD 215
           L++ L K  +  EA   L ++   G  P +V Y+  +D   K   VD+A+ +   +  Q 
Sbjct: 435 LVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQG 494

Query: 216 REPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRPTAAL 395
             P+VI Y  L+ GLC+ +R  +A  + +EME KG  P+ + +  LI GLC+      A+
Sbjct: 495 YCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAM 554

Query: 396 TYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKS 545
            +L  M +KE +P+   Y  L++   +      A  ++ EM   G  P S
Sbjct: 555 LFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSS 604



 Score = 84.3 bits (207), Expect = 5e-14
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 35/209 (16%)
 Frame = +3

Query: 3   GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNL-------------- 140
           GC PD++ +N LI GL  +NR  E+  LL E+   G+ P+  T N               
Sbjct: 354 GCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGA 413

Query: 141 ---------------------FIDSWCKNGAVDKAMAVLSRMSEQDREPNVITYTTLVDG 257
                                 +   CK+G   +A   L  M+E+  +P+++ Y+  +DG
Sbjct: 414 LHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDG 473

Query: 258 LCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRPTAALTYLREMEQKEMKPD 437
           L + +  D AL ++ ++  +G  P+ IA+  LI GLC+  R   A   L EME+K + P 
Sbjct: 474 LIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPS 533

Query: 438 AFIYIALLSAFLSDLNLTSAFEIFREMVD 524
           A  Y  L+       +L  A      M++
Sbjct: 534 AVTYNTLIDGLCKTDHLEEAMLFLSMMIE 562



 Score = 73.9 bits (180), Expect = 6e-11
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 5/199 (2%)
 Frame = +3

Query: 66  FTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVLSRMSEQDREPNVITYTT 245
           F +A  + +E+  RG     V +++ + ++ K G VDKA  ++  M E++   N  T+ +
Sbjct: 117 FDKALDVFNEIHDRGWVDEYV-FSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCS 175

Query: 246 LVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRPTAALTYLREMEQKE 425
           L+ G  +E R D AL ++++M++ G  P+   +  +I GLC       AL    EM+  +
Sbjct: 176 LIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFK 235

Query: 426 MKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHDKNYSIAVDAILKFSKDHR 605
           ++PD  I   L+S+F  +  LT  FE   E +D    PK+    Y+  +++++     H+
Sbjct: 236 IQPDVKIVTKLISSFSKEEELTCFFEEMHEDMD----PKASTLLYNSVLNSLVDNGSVHK 291

Query: 606 TSSGIQVL-----MGEGKI 647
               +Q +     +G+G+I
Sbjct: 292 AYHLLQAITIGNCIGDGEI 310



 Score = 73.9 bits (180), Expect = 6e-11
 Identities = 49/214 (22%), Positives = 92/214 (42%)
 Frame = +3

Query: 12  PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
           P+   F+++I GL K      A  L  ++   G  P ++ YN  ID  C +  + ++  +
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381

Query: 192 LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
           L  M E   EP   T   +   LCR      AL +  +M   G  P      +L+  LC+
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441

Query: 372 CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHD 551
             +   A  +L +M ++  +PD   Y A L   +    +  A ++F+++   G+ P    
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDV-- 499

Query: 552 KNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
             Y+I +  + K  +     + +  +  +G +P+
Sbjct: 500 IAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPS 533


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial [Vitis vinifera]
            gi|296085293|emb|CBI29025.3| unnamed protein product
            [Vitis vinifera]
          Length = 854

 Score =  258 bits (659), Expect = 2e-66
 Identities = 127/217 (58%), Positives = 160/217 (73%)
 Frame = +3

Query: 3    GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
            G CPDVVA+N LI G  K  R +EA  +LDE+VA+GL PSVVTYNL ID WCKNG +D+A
Sbjct: 627  GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQA 686

Query: 183  MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
               LSRM  ++REPNVITYTTL+DGLC   RPDDA+ +WNEM  KGC PNRI+F+ALI+G
Sbjct: 687  FHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHG 746

Query: 363  LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
            LC+C  P AAL Y REM ++E  PD  +Y+AL+++F+S+ N T AFEI +EMV  G FP 
Sbjct: 747  LCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPD 805

Query: 543  SHDKNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
              DKN     DAIL+ ++D  TSS ++ L+ EG+IPT
Sbjct: 806  PLDKNDLPLRDAILELAEDASTSSNVKNLIAEGRIPT 842



 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 59/195 (30%), Positives = 90/195 (46%)
 Frame = +3

Query: 3    GCCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKA 182
            GC  +V+ +N LI  L+ +NR  E   LL E+   G  P+  T+N      C+   V  A
Sbjct: 487  GCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGA 546

Query: 183  MAVLSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
            + ++  M     EP +  YT LV  LC+ KR  +A     EM R+G  P+ +A+ A I G
Sbjct: 547  LDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDG 606

Query: 363  LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPK 542
              +      AL   R++  +   PD   Y  L++ F     ++ A +I  EMV  G  P 
Sbjct: 607  FVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPS 666

Query: 543  SHDKNYSIAVDAILK 587
                 Y++ +D   K
Sbjct: 667  V--VTYNLLIDGWCK 679



 Score = 80.1 bits (196), Expect = 9e-13
 Identities = 53/214 (24%), Positives = 94/214 (43%)
 Frame = +3

Query: 12   PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
            PD  +F+++I GL    +   A SL  ++V  G   +V+ YN  ID    +  +++   +
Sbjct: 455  PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 514

Query: 192  LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
            L  M      P   T+ ++   LCR +    AL +  EM   G  P    +  L+  LC+
Sbjct: 515  LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 574

Query: 372  CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFPKSHD 551
              R   A  +L EM ++   PD   Y A +  F+    +  A EIFR++   G+ P    
Sbjct: 575  RKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV-- 632

Query: 552  KNYSIAVDAILKFSKDHRTSSGIQVLMGEGKIPT 653
              Y+  ++   K  +       +  ++ +G +P+
Sbjct: 633  VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPS 666



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 1/179 (0%)
 Frame = +3

Query: 6   CCPDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAM 185
           C P+  +FN L+  ++K+      E  L E+   G  P   T    + ++C +   DKA+
Sbjct: 195 CVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKAL 254

Query: 186 AVLSRMSEQDR-EPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYG 362
           +V + +  +   + +V++   L    C E   D A  +   ME  G   N   F  LI+G
Sbjct: 255 SVFNEIYGRGWVDGHVLSILVLTFSKCGEV--DKAFELIERMEDLGIRLNEKTFCVLIHG 312

Query: 363 LCRCCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDSGFFP 539
             R  R   AL   ++M++    PD  +Y AL+    +   +  A  +  EM + G  P
Sbjct: 313 FVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDP 371



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 47/172 (27%), Positives = 85/172 (49%)
 Frame = +3

Query: 12  PDVVAFNVLIRGLNKANRFTEAESLLDELVARGLSPSVVTYNLFIDSWCKNGAVDKAMAV 191
           PD      +++    + +F +A S+ +E+  RG     V  ++ + ++ K G VDKA  +
Sbjct: 232 PDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVL-SILVLTFSKCGEVDKAFEL 290

Query: 192 LSRMSEQDREPNVITYTTLVDGLCREKRPDDALLVWNEMERKGCPPNRIAFMALIYGLCR 371
           + RM +     N  T+  L+ G  R+ R D AL ++ +M++ G  P+   + ALI GLC 
Sbjct: 291 IERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCA 350

Query: 372 CCRPTAALTYLREMEQKEMKPDAFIYIALLSAFLSDLNLTSAFEIFREMVDS 527
                 AL  L EM++  + PD  I   L++    ++++    E   E +D+
Sbjct: 351 KKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDT 402



 Score = 67.8 bits (164), Expect = 5e-09
 Identities = 45/164 (27%), Positives = 70/164 (42%)
 Frame = +3

Query: 96  LVARGLSPSVVTYNLFIDSWCKNGAVDKAMAVLSRMSEQDREPNVITYTTLVDGLCREKR 275
           +V   + P   ++++ ID  C  G +D A+++   M     + NV+ Y  L+D L    R
Sbjct: 448 MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNR 507

Query: 276 PDDALLVWNEMERKGCPPNRIAFMALIYGLCRCCRPTAALTYLREMEQKEMKPDAFIYIA 455
            ++  L+  EM+  G  P +    ++   LCR    T AL  +REM     +P    Y  
Sbjct: 508 LEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTL 567

Query: 456 LLSAFLSDLNLTSAFEIFREMVDSGFFPKSHDKNYSIAVDAILK 587
           L+           A     EMV  GF P      YS A+D  +K
Sbjct: 568 LVKQLCKRKRSAEACNFLAEMVREGFLPDI--VAYSAAIDGFVK 609