BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00002288
         (2493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523449.1| PREDICTED: general transcription factor IIH ...   475   e-131
ref|NP_001242062.1| uncharacterized protein LOC100776751 [Glycin...   468   e-129
ref|XP_003601046.1| General transcription factor IIH subunit [Me...   456   e-125
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   387   e-105
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   387   e-105

>ref|XP_003523449.1| PREDICTED: general transcription factor IIH subunit 3-like [Glycine
            max]
          Length = 294

 Score =  475 bits (1223), Expect = e-131
 Identities = 239/284 (84%), Positives = 249/284 (87%), Gaps = 1/284 (0%)
 Frame = -2

Query: 1346 MPSAPSKLYADDVSLLVVTLDTNXXXXXXXXXXXXXFLSQVLAFLNSILLLGQLNQLVVI 1167
            MPSAPSKLYADDVSLLVVTLDTN             FLSQVLAFLN+ILLLGQLNQ++VI
Sbjct: 1    MPSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNTILLLGQLNQVIVI 60

Query: 1166 ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFVARDQKL-ATPHAXXXXXXX 990
            ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEF+ARD++L A           
Sbjct: 61   ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPS 120

Query: 989  XXXXXXXSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQHSTVPID 810
                   SMALCYIQRAFRSGPM PQPRILCLQG+ DGPEQYVAIMNAIFSAQHSTVPID
Sbjct: 121  SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPID 180

Query: 809  SCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDF 630
            SCYIGSNNSAFLQQASYITGGIYY+PPQLDGL+QYLSTVFATDLHSRAFLRLPKSVGVDF
Sbjct: 181  SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDF 240

Query: 629  RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQAE 498
            RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQ +
Sbjct: 241  RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQLD 284


>ref|NP_001242062.1| uncharacterized protein LOC100776751 [Glycine max]
            gi|255647869|gb|ACU24393.1| unknown [Glycine max]
          Length = 294

 Score =  468 bits (1204), Expect = e-129
 Identities = 235/284 (82%), Positives = 246/284 (86%), Gaps = 1/284 (0%)
 Frame = -2

Query: 1346 MPSAPSKLYADDVSLLVVTLDTNXXXXXXXXXXXXXFLSQVLAFLNSILLLGQLNQLVVI 1167
            MPSA SKLYADDVSLLVVTLDTN             FLSQVLAFLNSILLLGQLNQ++VI
Sbjct: 1    MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVI 60

Query: 1166 ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFVARDQKLATPHAXXXXXXXX 987
            ATGCNSCGY+YDSTSDKNHGSTTGTMPALYSNLLHNLDEF+ARD++L    A        
Sbjct: 61   ATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPS 120

Query: 986  XXXXXXS-MALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQHSTVPID 810
                    MALCYIQRAFRSGPM PQPRILCL+G  DGPEQYVAIMNAIFSAQHSTVPID
Sbjct: 121  SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLRGVADGPEQYVAIMNAIFSAQHSTVPID 180

Query: 809  SCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDF 630
            SCYIGSNNSAFLQQASYITGGIYY+PPQLDGL+QYLSTVFATDL+SRAFLRLPKSVGVDF
Sbjct: 181  SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLYSRAFLRLPKSVGVDF 240

Query: 629  RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQAE 498
            RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQ +
Sbjct: 241  RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQLD 284


>ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355490094|gb|AES71297.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 340

 Score =  456 bits (1172), Expect = e-125
 Identities = 227/281 (80%), Positives = 236/281 (83%)
 Frame = -2

Query: 1340 SAPSKLYADDVSLLVVTLDTNXXXXXXXXXXXXXFLSQVLAFLNSILLLGQLNQLVVIAT 1161
            SAPSK YADDVSLLVVTLDTN             FLSQVLAFLNSILLLGQLNQ+VVIAT
Sbjct: 4    SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63

Query: 1160 GCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFVARDQKLATPHAXXXXXXXXXX 981
            GCNSC YVYDS SDKNH ST GTMPA+YSNLLHNLDEFVA+DQ+L TPH           
Sbjct: 64   GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123

Query: 980  XXXXSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQHSTVPIDSCY 801
                SMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQ S VP+DSC+
Sbjct: 124  SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183

Query: 800  IGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDFRAS 621
            IGSNNSAFLQQASYITGGIYYRPPQ++GLFQYLSTVFATDLHSR FLRLPKS+GVDFRAS
Sbjct: 184  IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRAS 243

Query: 620  CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQAE 498
            CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC      A  E
Sbjct: 244  CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCSFTIYDASNE 284


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  387 bits (994), Expect = e-105
 Identities = 198/284 (69%), Positives = 220/284 (77%)
 Frame = -2

Query: 1346 MPSAPSKLYADDVSLLVVTLDTNXXXXXXXXXXXXXFLSQVLAFLNSILLLGQLNQLVVI 1167
            M SAPSKLYADDVSLLVV LDTN             FLS VLAFLNSIL+L QLN++VVI
Sbjct: 1    MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 1166 ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFVARDQKLATPHAXXXXXXXX 987
             TG  SC Y+Y+S+S  NHG   G MPAL + LL NL+EFV  D++ +            
Sbjct: 61   GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQ-SIKEDPKGGTMSS 119

Query: 986  XXXXXXSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQHSTVPIDS 807
                  SMALCYIQ+ FRSG +HPQPRILCLQGS DGPEQYVAIMNAIFSAQ S VPIDS
Sbjct: 120  LLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179

Query: 806  CYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDFR 627
            CYIGS+NSAFLQQASYITGG+Y +P Q+DGLFQYLSTVF TDLHSR FL+LPKSVGVDFR
Sbjct: 180  CYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFR 239

Query: 626  ASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQAEV 495
            ASCFCHK+TIDMGYVCSVCLSIFC+HH KCSTCGSVFG+   E+
Sbjct: 240  ASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVEL 283


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  387 bits (994), Expect = e-105
 Identities = 197/284 (69%), Positives = 219/284 (77%), Gaps = 1/284 (0%)
 Frame = -2

Query: 1346 MPSAPSKLYADDVSLLVVTLDTNXXXXXXXXXXXXXFLSQVLAFLNSILLLGQLNQLVVI 1167
            M   PSKLY+DDVSLLVV LDTN             FLS VLAFLNSILL+ QLNQ+VVI
Sbjct: 1    MAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQLNQVVVI 60

Query: 1166 ATGCNSCGYVYDSTS-DKNHGSTTGTMPALYSNLLHNLDEFVARDQKLATPHAXXXXXXX 990
            ATGCNSC +++DS+S   N     G MPAL SNLL  L+EFV  D+KL+           
Sbjct: 61   ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSK-EVLAAGIGS 119

Query: 989  XXXXXXXSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQHSTVPID 810
                   SMALCYIQR FR+GP+HPQPRILCLQGS DGPEQYVA+MNAIFSAQ S VPID
Sbjct: 120  SLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPID 179

Query: 809  SCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDF 630
            SC IG+ +SAFLQQASYITGG+Y +P QLDGLFQYLSTVFATDLHSR FL+LPK  GVDF
Sbjct: 180  SCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDF 239

Query: 629  RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQAE 498
            RASCFCHK TIDMGY+CSVCLSIFC+HH KCSTCGSVFGQAQ++
Sbjct: 240  RASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSD 283