BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00001736
         (729 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   406   e-111
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       338   9e-91
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   336   3e-90
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana...   335   7e-90
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   332   5e-89

>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/242 (80%), Positives = 218/242 (90%)
 Frame = +3

Query: 3    ILFKVNSLVQHGYLSGSGLDNNFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTRWLVG 182
            ILFKVNSLVQH  L+G  LD +FY +VDPR++  EFIE+ALEK+YYSK+FCYEPT+WL  
Sbjct: 285  ILFKVNSLVQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTD 344

Query: 183  QYKRYLKSNNPPRSPMISLDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNF 362
            QYK YL+S N PRSP ISLDTGLVYVRRVQITPCKVYF GPE+NVSNRVLRHF EHI+NF
Sbjct: 345  QYKTYLESKNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNF 404

Query: 363  LRVSFVDEELDKLYSTDLSSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQLRE 542
            LRVSFVDEELDKL+STDLSSRS   KTEIY R+LSIL+NGI++GDKKFEFLAFSSSQLRE
Sbjct: 405  LRVSFVDEELDKLFSTDLSSRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRE 464

Query: 543  NSLWMFAPTTTGCTAAHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVNRSEIEIIP 722
            NSLWMFAPT TGCTAA+IR+WMG+F  IRNVAKYAARLGQSFGSSTETLSV+R E+EIIP
Sbjct: 465  NSLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIP 524

Query: 723  DV 728
            DV
Sbjct: 525  DV 526


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  338 bits (866), Expect = 9e-91
 Identities = 166/245 (67%), Positives = 199/245 (81%), Gaps = 3/245 (1%)
 Frame = +3

Query: 3    ILFKVNSLVQHGYLSGSGLDNNFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTRWLVG 182
            ILFK++SL+QHG   G  L+ NF+ +VDPR+ N+  IEHALEK+YY K+ CY+P RWL  
Sbjct: 272  ILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTE 331

Query: 183  QYKRYLKSNNPPRSPMISLDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNF 362
            QY  YLK    P+SP I+LD GLVYVRRV +TPCKVYF GPE+NVSNRVLR+++E INNF
Sbjct: 332  QYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNF 391

Query: 363  LRVSFVDEELDKLYSTDL---SSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQ 533
            LRVSFVDEE +K++STDL   +S  +G++T+IY R+LS LRNG IIGDK+FEFLAFSSSQ
Sbjct: 392  LRVSFVDEEWEKIHSTDLLPRASTGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQ 451

Query: 534  LRENSLWMFAPTTTGCTAAHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVNRSEIE 713
            LR+NS+WMFA +  G TA  IR WMGDFR IRNVAKYAARLGQSFGSS ETLSV R E+E
Sbjct: 452  LRDNSVWMFA-SRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVE 510

Query: 714  IIPDV 728
            +IPDV
Sbjct: 511  VIPDV 515


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  336 bits (861), Expect = 3e-90
 Identities = 168/246 (68%), Positives = 204/246 (82%), Gaps = 4/246 (1%)
 Frame = +3

Query: 3    ILFKVNSLVQHGYLSGSGLDNNFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTRWLVG 182
            ILF+VN LVQ+G L+GS LD+ FY +VDP ++ +  IE+ALEK+Y+ K+ CYEP++W   
Sbjct: 282  ILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNE 341

Query: 183  QYKRYLKSNNPPRSPMISLDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNF 362
            QYK+YL S NPPRSP++SLD GLVYV +VQITPCKV+F GPE+NVSNRVLR + E I+NF
Sbjct: 342  QYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNF 401

Query: 363  LRVSFVDEELDKLYSTDL----SSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSS 530
            LRVSFVDEEL+K++STD+    SSR++  +T IYNR+LS L+NGI+IGDKKFEFLAFSSS
Sbjct: 402  LRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSS 461

Query: 531  QLRENSLWMFAPTTTGCTAAHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVNRSEI 710
            QLRENS WMFA +  G TAA IR WMG F  IRNVA+YAARLGQSFGSSTETLSV+  EI
Sbjct: 462  QLRENSCWMFA-SRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEI 520

Query: 711  EIIPDV 728
            EIIPD+
Sbjct: 521  EIIPDI 526


>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score =  335 bits (858), Expect = 7e-90
 Identities = 165/245 (67%), Positives = 199/245 (81%), Gaps = 3/245 (1%)
 Frame = +3

Query: 3    ILFKVNSLVQHGYLSGSGLDNNFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTRWLVG 182
            ILFK++SL+QHG   G  L+ NF+ +VDPR+ N+  IEHALEK+YY K+ CY+P RWL  
Sbjct: 271  ILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTE 330

Query: 183  QYKRYLKSNNPPRSPMISLDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNF 362
            QY  YLK    P+SP I+LD GLVYVRRV +TPCKVYF GPE+NVSNRVLR+++E I+NF
Sbjct: 331  QYDEYLKHRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 390

Query: 363  LRVSFVDEELDKLYSTDL---SSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQ 533
            LRVSFVDEE +K++STDL   +S  +G +T+IY R+LS LRNG +IGDKKFEFLAFSSSQ
Sbjct: 391  LRVSFVDEEWEKIHSTDLLPRASTGNGIRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQ 450

Query: 534  LRENSLWMFAPTTTGCTAAHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVNRSEIE 713
            LR+NS+WMFA +  G TA  IR WMGDFR IRNVAKYAARLGQSFGSS ETLSV+R E+E
Sbjct: 451  LRDNSVWMFA-SRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVSRHEVE 509

Query: 714  IIPDV 728
            +IPDV
Sbjct: 510  VIPDV 514


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  332 bits (851), Expect = 5e-89
 Identities = 166/245 (67%), Positives = 195/245 (79%), Gaps = 3/245 (1%)
 Frame = +3

Query: 3    ILFKVNSLVQHGYLSGSGLDNNFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTRWLVG 182
            ILFK++SLVQHG + G  L+  F+ +VDPR+ N+  IEHALEK+YY K+ CY+P RWL  
Sbjct: 272  ILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTE 331

Query: 183  QYKRYLKSNNPPRSPMISLDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNF 362
            QY  YLK   PP+SP I+LD GLVYVRRV +TPCKVYF GPE+NVSNRVLR+++E I+NF
Sbjct: 332  QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 363  LRVSFVDEELDKLYSTDL---SSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQ 533
            LRVSFVDEE +KLYSTDL   +S   G +T IY R+LS LR G +IGDKKFEFLAFSSSQ
Sbjct: 392  LRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQ 451

Query: 534  LRENSLWMFAPTTTGCTAAHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVNRSEIE 713
            LR+NS+WMFA +  G TA  IR WMGDF  I+NVAKYAARLGQSFGSS ETLSV R EIE
Sbjct: 452  LRDNSVWMFA-SRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE 510

Query: 714  IIPDV 728
            +IPDV
Sbjct: 511  VIPDV 515