BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00001056
         (2095 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago t...   696   0.0  
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD ...   662   0.0  
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-...   657   0.0  
ref|XP_003590454.1| RNA polymerase sigma factor [Medicago trunca...   580   e-163
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2...   555   e-155

>ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
            gi|355500688|gb|AES81891.1| RNA polymerase sigma factor
            rpoD [Medicago truncatula]
          Length = 557

 Score =  696 bits (1797), Expect = 0.0
 Identities = 370/568 (65%), Positives = 431/568 (75%), Gaps = 12/568 (2%)
 Frame = +2

Query: 152  MFSSSPPFPSRTLPSPSVMML-HEQGAPAVASWSSSFAAQHFPTSVLLQEQRDDYKPLLH 328
            MFS S PFPSR LPSPSVMM  H+Q APA++SW ++F     PTSVLLQE RD+YKPLLH
Sbjct: 1    MFSPSTPFPSRILPSPSVMMPPHDQAAPALSSWPTTF-----PTSVLLQEHRDEYKPLLH 55

Query: 329  LYKED-KTSQATLNTRPMDVASVHDK------NNASNVDELVHSFMQQLHLPCHLRNLLA 487
               ED K  QATLNTR  D+ S+ +K      +   +VD  VH+ M QLHL CHL+NLLA
Sbjct: 56   TCNEDNKPPQATLNTRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLA 115

Query: 488  SSPTGETAASSTMQPIAVDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXXX 667
            SSP  E   SS+    +  + +PADG QW+                   +ELKL+K    
Sbjct: 116  SSPE-EDFVSSSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDD 174

Query: 668  XXXXXGLASTSLADSSLGKNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNVQGRL 835
                 GLA     DSSLGKNKI                      D++ YLT+KSNVQ RL
Sbjct: 175  DSLPLGLA-----DSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRL 229

Query: 836  RVEKKLKEGFDENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGR 1015
            R+EKKLKEG D N  LRLFL  PE+KQLL++ EE+QLIAQ+QDLF+L+E K KLQS FGR
Sbjct: 230  RLEKKLKEGLDGNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGR 289

Query: 1016 DPTLAEWADGVGLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQE 1195
            +PTLAEWADGVGLSC  LQ +LHCGNRSK+KLIHANLRLVVHIAK+YQGRG+S QDLLQE
Sbjct: 290  EPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQE 349

Query: 1196 GSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAK 1375
            GSMGLM+SVEKFKPQAGCRF+TYAYWWIRQ+IRRA+FLHS+TIRLPEN Y LLGK+ EAK
Sbjct: 350  GSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAK 409

Query: 1376 KFYIKEGNLHPTKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSA 1555
            K YIKEGNLHPTKEE+A+RV ITVD+LE+LL + R PLSM++AVWAD DTTFQEITADS+
Sbjct: 410  KSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSS 469

Query: 1556 IEAPDLCVAKQQMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERV 1735
            IE P++CVAKQ MRSHVRNLL IL PKER+++RLRFGIEDGYEKSL+EIG  +G+CKERV
Sbjct: 470  IEIPNVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERV 529

Query: 1736 RQLESRGLNKLKQCLVSQQLDAYVNLLV 1819
            RQLES+ LNKLKQCLVSQQLDAYV+L+V
Sbjct: 530  RQLESQALNKLKQCLVSQQLDAYVDLIV 557


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
          Length = 574

 Score =  662 bits (1708), Expect = 0.0
 Identities = 349/570 (61%), Positives = 419/570 (73%), Gaps = 13/570 (2%)
 Frame = +2

Query: 149  TMFSSSPPFPSRT------LP---SPSVMMLHEQGAPAVASWSSSFAAQHFPTSVLLQEQ 301
            TMF SSPPFP RT      LP   S SV+ML EQ +P VASWSS+F+AQ+FP SVLLQEQ
Sbjct: 6    TMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQEQ 65

Query: 302  RDDYKPLLHLYKEDKTSQATLNTRPMDVASVHDKNNASNVDELVHSFMQQLHLPCHLRNL 481
            RD+Y+PLLH+ KEDKTSQA L+TR MD   VH++NN  N D++V  F + LH   HL+NL
Sbjct: 66   RDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWPHLQNL 125

Query: 482  LASSPTGETAASSTMQPIAVDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAX 661
            LASS TGE +ASST+Q ++ D +   +G+Q N                   E+LK IKA 
Sbjct: 126  LASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLKSIKAD 185

Query: 662  XXXXXXXGLASTSLADSSLGKNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNVQG 829
                   GLAST LAD S+G+NK                       D+++YL RK +   
Sbjct: 186  DDSIPF-GLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAHE 244

Query: 830  RLRVEKKLKEGFDENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQF 1009
            +LRVEKK  E  D+NDPL  FLRGPE+KQLLTL +E+QLI+Q+QDL RLEEVK KLQSQF
Sbjct: 245  KLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQF 304

Query: 1010 GRDPTLAEWADGVGLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLL 1189
            GR+PT+AEWA+GVGL+C  L  QL  G+RS+EKLI ANLR+VVH+AK YQGRG+S QDLL
Sbjct: 305  GREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLL 364

Query: 1190 QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVME 1369
            QEGSMGLMKSVEKF P  G RF  YA+WWIRQ+IR+A+F HSRTIRLPE ++ LLGKVME
Sbjct: 365  QEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVME 424

Query: 1370 AKKFYIKEGNLHPTKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITAD 1549
            AKK YI+EGNLHPTKEELARRV +TV+K++ LL + R+P+SMQ+ VWADQ+TTFQEITAD
Sbjct: 425  AKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITAD 484

Query: 1550 SAIEAPDLCVAKQQMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKE 1729
              +EA D+ V KQ MR HV N+LSIL PKERRIIRLR+G EDG +KSLSEIG+  GL KE
Sbjct: 485  PTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKE 544

Query: 1730 RVRQLESRGLNKLKQCLVSQQLDAYVNLLV 1819
            RVRQLE R L KLK+CLV Q LDAYV+LL+
Sbjct: 545  RVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 571

 Score =  657 bits (1695), Expect = 0.0
 Identities = 349/572 (61%), Positives = 421/572 (73%), Gaps = 15/572 (2%)
 Frame = +2

Query: 149  TMFSSSPPFPSRT------LPSPS----VMMLHEQGAPAVASWSSSFAAQHFPTSVLLQE 298
            TMF SSPPFP RT      LPS S    V+MLHEQ +P VASWSS+F+AQ+FP SVLL E
Sbjct: 6    TMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPE 65

Query: 299  QRDDYKPLLHLYKEDKTSQATLNTRPMDVASVHDKNNASNVDELVHSFMQQLHLPCHLRN 478
            QRD+Y+PLLH+ KEDKTSQA L+TR MD  +VH++NN  N D++V  F + LH   H  N
Sbjct: 66   QRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLH---HWPN 122

Query: 479  L-LASSPTGETAASSTMQPIAVDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIK 655
            L L SS  GE AASST++ ++VD E   +G+Q+N                   E+LK IK
Sbjct: 123  LQLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDLKSIK 182

Query: 656  AXXXXXXXXGLASTSLADSSLGKNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNV 823
            A         LASTSLAD S+G+NK                       D+++YL RK + 
Sbjct: 183  ADDVPF---SLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDA 239

Query: 824  QGRLRVEKKLKEGFDENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQS 1003
            Q +LR EKK  E  D++DPLRLFL GPE+KQLLTL +E+QLI+Q+QDL RLEEVK  LQS
Sbjct: 240  QEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQS 299

Query: 1004 QFGRDPTLAEWADGVGLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQD 1183
            QFGR+PT+AEWA+G GL+C  LQ+QLH GNRS+EKLI ANLR+VVH+AK YQGRG+S QD
Sbjct: 300  QFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQD 359

Query: 1184 LLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKV 1363
            LLQEGSMGLMKSVEKF P AG RF  YA+WWIRQ+IR+A+F HSRTIRLPE ++ LLGKV
Sbjct: 360  LLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKV 419

Query: 1364 MEAKKFYIKEGNLHPTKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEIT 1543
            MEAKK YI+EGNLHPTKEELARRV +TV+K++ LL + R+P+SMQ+ VWADQ+TTFQEIT
Sbjct: 420  MEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEIT 479

Query: 1544 ADSAIEAPDLCVAKQQMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLC 1723
            AD  +EA D+ V KQ MR HV N+LS+L PKERRIIRLR+G EDG +KSLSEIG+  GL 
Sbjct: 480  ADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLS 539

Query: 1724 KERVRQLESRGLNKLKQCLVSQQLDAYVNLLV 1819
            KERVRQLE R L KLK+CLV Q LDAYV+LL+
Sbjct: 540  KERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 571


>ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
            gi|355479502|gb|AES60705.1| RNA polymerase sigma factor
            [Medicago truncatula]
          Length = 567

 Score =  580 bits (1494), Expect = e-163
 Identities = 320/577 (55%), Positives = 398/577 (68%), Gaps = 20/577 (3%)
 Frame = +2

Query: 149  TMFSSSPPFPSRT-----LPSPS---VMMLHEQGAPAVASWSSSFAAQHFPTSVLLQEQR 304
            TMF SSP  P RT     LPS S   V+ML EQ AP V +W +S+++Q+FPTSVLLQEQ 
Sbjct: 6    TMFCSSPLCPPRTHHWNTLPSSSYTSVLMLREQVAPTVTAWCTSYSSQNFPTSVLLQEQC 65

Query: 305  DDYKPLLHLYKEDKTSQATLNTRPMDVASVHDKNNASNVDELVHSFMQQLHLPCHLRNLL 484
            D+Y+PLLH+ K+DKT QATLNTR MD+ SV +KN+ SN D++   F Q LHL   L NLL
Sbjct: 66   DEYRPLLHISKKDKTCQATLNTRQMDMVSVQEKNDTSNTDQVARDFRQHLHLLPRLENLL 125

Query: 485  ASSPTGETAASSTMQPIAVDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXX 664
             SS TGE   SST+Q         AD LQ N                   E+L  IKA  
Sbjct: 126  TSSQTGEMDGSSTLQH--------ADSLQCNAVSLSKQAASVA-------EDLISIKADE 170

Query: 665  XXXXXXG--------LASTSLADSSLGKNKIXXXXXXXXXXXXXXXXXX----DEDSYLT 808
                           LAS+S A+  LG NK                       D+++YL 
Sbjct: 171  DADNSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKDKETYLD 230

Query: 809  RKSNVQGRLRVEKKLKEGFDENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVK 988
             K   + +L+V+KK+ +G +++DPL  FL+ PESKQLLT  +E+QL+ Q+Q+L RLE++K
Sbjct: 231  GKDAAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELLRLEDLK 290

Query: 989  NKLQSQFGRDPTLAEWADGVGLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRG 1168
              LQSQFGR+PT+AEWA+G GL+C  ++ QL CGNRS+EKLI ANLRLV +IAK YQGRG
Sbjct: 291  TSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRG 350

Query: 1169 VSFQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYT 1348
            +S +DLLQEGS GL+KS++KFK QAGCRFA+YAYWWI+Q+IR+AI+ HSRTIRLPE +Y 
Sbjct: 351  LSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYN 410

Query: 1349 LLGKVMEAKKFYIKEGNLHPTKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTT 1528
             L KV+EAKK Y +EGNL+PTKEELARRV I+ DK++ LL   R+P+SMQ  V ++ DTT
Sbjct: 411  KLSKVLEAKKLYKEEGNLNPTKEELARRVGISPDKVDRLLFVARIPISMQNTVGSETDTT 470

Query: 1529 FQEITADSAIEAPDLCVAKQQMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGN 1708
            FQEITAD AIE+P++ VAKQ MR HV N+L+IL PKERRIIRLRFG EDG EKSLSEIG 
Sbjct: 471  FQEITADCAIESPNMSVAKQLMRRHVLNVLNILRPKERRIIRLRFGFEDGEEKSLSEIGE 530

Query: 1709 RMGLCKERVRQLESRGLNKLKQCLVSQQLDAYVNLLV 1819
              GL +ERVRQLESR L KLK+ LV Q LDAY +LL+
Sbjct: 531  IFGLSRERVRQLESRALYKLKKYLVGQGLDAYADLLI 567


>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
            predicted protein [Populus trichocarpa]
          Length = 535

 Score =  555 bits (1429), Expect = e-155
 Identities = 312/565 (55%), Positives = 381/565 (67%), Gaps = 9/565 (1%)
 Frame = +2

Query: 149  TMFSSSPPFPSRT----LPSPSVMMLHEQGAPAVASWSSSFAAQHFPTSVLLQEQRDDYK 316
            T+ SSSP FP+RT      + SV++L EQ  PAV+S  ++  AQHFPTSVLLQEQRD+++
Sbjct: 6    TLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFR 65

Query: 317  PLLHLYKEDKTSQATLNTRPMDVA-SVHDKNNASNVDELVHSFMQQLHLPCHLRNLLASS 493
            PL +++KED+ SQATL+ R  ++  S H+  ++  +D+LV +F  QLH      NL    
Sbjct: 66   PLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNLTDKL 125

Query: 494  PTGETAASSTMQPIAVDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXXXXX 673
               E      +   A+ +   A  L  N                                
Sbjct: 126  IDVEPTNVINLAKRALSASKHAAFLADNNTDLD--------------------------- 158

Query: 674  XXXGLASTSLADSSLGKNKIXXXXXXXXXXXXXXXXXXDED----SYLTRKSNVQGRLRV 841
                LASTS +  SL + KI                   +D    +Y ++ +++Q     
Sbjct: 159  ---NLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQ----- 210

Query: 842  EKKLKEGFDENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGRDP 1021
             K+L +GFD NDPLRLFL GPE+KQLLT  EE +LIAQ+QDL  LE VKN+L+SQFGR+P
Sbjct: 211  -KRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 269

Query: 1022 TLAEWADGVGLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQEGS 1201
            TL EWA  VGLSCH L+ QLH GNRS+EKLI+ANLR+VVHIAK YQ RG+  QDLLQEG+
Sbjct: 270  TLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 329

Query: 1202 MGLMKSVEKFKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAKKF 1381
            +GLMKS+EKFKPQAGCRFATYAYWWIRQ+I +AIF HSRTIRLPEN+Y LLGKVMEAK+ 
Sbjct: 330  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 389

Query: 1382 YIKEGNLHPTKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSAIE 1561
            YI+EGN  PT EE+ARRV I +DKLE LL   R PLSMQ+ VW+DQ+TTFQEITAD+ IE
Sbjct: 390  YIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 449

Query: 1562 APDLCVAKQQMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERVRQ 1741
             PD+ VAKQ MR H+R LL+ILS KERRIIRLRFGIEDG +KSLSEIGN  GL KERVRQ
Sbjct: 450  IPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQ 509

Query: 1742 LESRGLNKLKQCLVSQQLDAYVNLL 1816
            LESR L KLKQC+ S  LDAY +LL
Sbjct: 510  LESRALYKLKQCVGSHGLDAYADLL 534