BLASTX nr result

ID: Glycyrrhiza23_contig00000733 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00000733
         (592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518955.1| PREDICTED: zinc finger CCCH domain-containin...   122   6e-34
ref|XP_002267320.1| PREDICTED: zinc finger CCCH domain-containin...   119   8e-31
emb|CAN74119.1| hypothetical protein VITISV_002050 [Vitis vinifera]   119   2e-30
ref|XP_003536245.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ...   115   3e-30
ref|XP_003536892.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ...   115   1e-29

>ref|XP_003518955.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like
           [Glycine max]
          Length = 471

 Score =  122 bits (306), Expect(3) = 6e-34
 Identities = 56/67 (83%), Positives = 59/67 (88%)
 Frame = +3

Query: 3   LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGPMRYKPSASPLIDMPVTPYPVGSLLSTR 182
           LPLRPG+QPCAFYLQNGHCKFGSTCKFDHPLG MRY PSAS LID+PVTPYPVGSLLS  
Sbjct: 337 LPLRPGLQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQL 396

Query: 183 DPSFGAS 203
            PS  +S
Sbjct: 397 APSTTSS 403



 Score = 43.5 bits (101), Expect(3) = 6e-34
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +2

Query: 314 SISLSDVQLSSQASTPPSSNRTTGQRGEI 400
           S+SLSDVQLSSQ++ PP+S+R+T Q GEI
Sbjct: 442 SVSLSDVQLSSQSNAPPNSSRSTRQSGEI 470



 Score = 24.3 bits (51), Expect(3) = 6e-34
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 178 PGILHSELQPEMMSVS*TEPFXXXXXXXXXXXXXXXXXXXXQGGSIYLT 324
           P    S+L+PE+MS S  E F                    QGGS+ L+
Sbjct: 398 PSTTSSDLRPELMSGSKKESFSARIPSSGNSSGTSVGLIFSQGGSVSLS 446


>ref|XP_002267320.1| PREDICTED: zinc finger CCCH domain-containing protein 32 isoform 1
           [Vitis vinifera] gi|296086618|emb|CBI32253.3| unnamed
           protein product [Vitis vinifera]
          Length = 475

 Score =  119 bits (299), Expect(2) = 8e-31
 Identities = 54/67 (80%), Positives = 57/67 (85%)
 Frame = +3

Query: 3   LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGPMRYKPSASPLIDMPVTPYPVGSLLSTR 182
           LPLRPGVQPC FYLQNG+CKFGSTCKFDHPLG MRY PSAS L DMPV PYPVGS L+T 
Sbjct: 338 LPLRPGVQPCTFYLQNGYCKFGSTCKFDHPLGNMRYSPSASSLTDMPVAPYPVGSSLATL 397

Query: 183 DPSFGAS 203
            PSF +S
Sbjct: 398 APSFSSS 404



 Score = 39.7 bits (91), Expect(2) = 8e-31
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +2

Query: 314 SISLSDVQLSSQASTPPSSNRTTGQRGEI 400
           S+SLSDVQLS Q+S P SS+R+T Q GE+
Sbjct: 443 SVSLSDVQLSGQSSAPLSSSRSTRQGGEV 471


>emb|CAN74119.1| hypothetical protein VITISV_002050 [Vitis vinifera]
          Length = 1388

 Score =  119 bits (299), Expect(2) = 2e-30
 Identities = 54/67 (80%), Positives = 57/67 (85%)
 Frame = +3

Query: 3   LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGPMRYKPSASPLIDMPVTPYPVGSLLSTR 182
           LPLRPGVQPC FYLQNG+CKFGSTCKFDHPLG MRY PSAS L DMPV PYPVGS L+T 
Sbjct: 376 LPLRPGVQPCTFYLQNGYCKFGSTCKFDHPLGNMRYSPSASSLTDMPVAPYPVGSSLATL 435

Query: 183 DPSFGAS 203
            PSF +S
Sbjct: 436 APSFSSS 442



 Score = 38.5 bits (88), Expect(2) = 2e-30
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +2

Query: 314 SISLSDVQLSSQASTPPSSNRTTGQRGE 397
           S+SLSDVQLS Q+S P SS+R+T Q GE
Sbjct: 481 SVSLSDVQLSGQSSAPLSSSRSTRQGGE 508


>ref|XP_003536245.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
           protein 32-like [Glycine max]
          Length = 494

 Score =  115 bits (287), Expect(3) = 3e-30
 Identities = 53/67 (79%), Positives = 55/67 (82%)
 Frame = +3

Query: 3   LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGPMRYKPSASPLIDMPVTPYPVGSLLSTR 182
           LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLG  RY P  S  ID+PVTPYPVGSLLS  
Sbjct: 337 LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSTRYTPWVSSFIDVPVTPYPVGSLLSQL 396

Query: 183 DPSFGAS 203
            PS  +S
Sbjct: 397 APSTTSS 403



 Score = 39.7 bits (91), Expect(3) = 3e-30
 Identities = 26/56 (46%), Positives = 33/56 (58%)
 Frame = +2

Query: 314 SISLSDVQLSSQASTPPSSNRTTGQRGEIH*SR*LTRK*FLIIIEYDFTSFDCFCL 481
           S+SLS+VQLSSQ+  P SS+R+T Q  EI   +        + I  DFTS   FCL
Sbjct: 442 SVSLSNVQLSSQSPPPLSSSRSTRQSREIRECKLENNS---LSIGCDFTSLHYFCL 494



 Score = 23.1 bits (48), Expect(3) = 3e-30
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +1

Query: 178 PGILHSELQPEMMSVS*TEPFXXXXXXXXXXXXXXXXXXXXQGGSIYLT 324
           P    SEL+PE+MS S  E                      QGGS+ L+
Sbjct: 398 PSTTSSELRPELMSGSKKESLAARISSSGNSSGTSVGLIFSQGGSVSLS 446


>ref|XP_003536892.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
           protein 32-like [Glycine max]
          Length = 473

 Score =  115 bits (289), Expect(2) = 1e-29
 Identities = 54/67 (80%), Positives = 57/67 (85%)
 Frame = +3

Query: 3   LPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGPMRYKPSASPLIDMPVTPYPVGSLLSTR 182
           LPLRPG+QPCAFYLQNGHCKFGSTCKFDH LG MRY PSAS LID+PVTPY VGSLLS  
Sbjct: 337 LPLRPGLQPCAFYLQNGHCKFGSTCKFDHSLGSMRYSPSASSLIDVPVTPYLVGSLLSQL 396

Query: 183 DPSFGAS 203
            PS  A+
Sbjct: 397 VPSTSAT 403



 Score = 39.3 bits (90), Expect(2) = 1e-29
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +2

Query: 314 SISLSDVQLSSQASTPPSSNRTTGQRGEI 400
           S+ LSDVQLSSQ+S P +S+R+T Q GEI
Sbjct: 444 SVLLSDVQLSSQSSAPTNSSRSTRQSGEI 472


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