BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00000400
         (1060 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-...   326   7e-87
ref|XP_003590454.1| RNA polymerase sigma factor [Medicago trunca...   322   1e-85
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD ...   320   5e-85
gb|AFK38759.1| unknown [Lotus japonicus]                              306   7e-81
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2...   287   3e-75

>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 571

 Score =  326 bits (835), Expect = 7e-87
 Identities = 171/273 (62%), Positives = 195/273 (71%)
 Frame = -2

Query: 1056 AGLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKNYXXXXXXXXXXXXXGSMGLLKSVK 877
            AGLNC+ LQ+QL  GNRSREKL+QANLR+V HVAK+Y             GSMGL+KSV+
Sbjct: 314  AGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVE 373

Query: 876  KFKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLPEKVYTQFGKILEAKKLYIQEGNLH 697
            KF P AG RFG+YA+WWIRQAIRKA+F HS+TIRLPEKV+   GK++EAKKLYIQEGNLH
Sbjct: 374  KFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLH 433

Query: 696  PTKEELARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVWAEQN 517
            PTKEELAR                                             TVWA+QN
Sbjct: 434  PTKEELAR---------------------RVGVTVEKIDKLLFSARIPISMQQTVWADQN 472

Query: 516  TTFQEITADTAIESPDTSVSKQLMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEV 337
            TTFQEITAD  +E+ D +V KQLMRRHVLN+LS L PKERRIIRLR+GFEDGEQKSLSE+
Sbjct: 473  TTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEI 532

Query: 336  GEIFGLSRERVRQLEIRAFHKLKKCLVSQGLDA 238
            G+IFGLS+ERVRQLEIRA +KLKKCLV QGLDA
Sbjct: 533  GDIFGLSKERVRQLEIRALYKLKKCLVKQGLDA 565


>ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
            gi|355479502|gb|AES60705.1| RNA polymerase sigma factor
            [Medicago truncatula]
          Length = 567

 Score =  322 bits (824), Expect = 1e-85
 Identities = 171/273 (62%), Positives = 197/273 (72%)
 Frame = -2

Query: 1056 AGLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKNYXXXXXXXXXXXXXGSMGLLKSVK 877
            AGLNC+ ++ QLRCGNRSREKL+QANLRLVH++AK+Y             GS GL+KS+K
Sbjct: 310  AGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIK 369

Query: 876  KFKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLPEKVYTQFGKILEAKKLYIQEGNLH 697
            KFK QAGCRF SYAYWWI+QAIRKAI++HS+TIRLPEKVY +  K+LEAKKLY +EGNL+
Sbjct: 370  KFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLN 429

Query: 696  PTKEELARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVWAEQN 517
            PTKEELAR                                             TV +E +
Sbjct: 430  PTKEELAR---------------------RVGISPDKVDRLLFVARIPISMQNTVGSETD 468

Query: 516  TTFQEITADTAIESPDTSVSKQLMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEV 337
            TTFQEITAD AIESP+ SV+KQLMRRHVLN+L+ LRPKERRIIRLRFGFEDGE+KSLSE+
Sbjct: 469  TTFQEITADCAIESPNMSVAKQLMRRHVLNVLNILRPKERRIIRLRFGFEDGEEKSLSEI 528

Query: 336  GEIFGLSRERVRQLEIRAFHKLKKCLVSQGLDA 238
            GEIFGLSRERVRQLE RA +KLKK LV QGLDA
Sbjct: 529  GEIFGLSRERVRQLESRALYKLKKYLVGQGLDA 561


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
          Length = 574

 Score =  320 bits (819), Expect = 5e-85
 Identities = 168/272 (61%), Positives = 192/272 (70%)
 Frame = -2

Query: 1053 GLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKNYXXXXXXXXXXXXXGSMGLLKSVKK 874
            GLNC+ L  QLR G+RSREKL+QANLR+V HVAK+Y             GSMGL+KSV+K
Sbjct: 318  GLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEK 377

Query: 873  FKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLPEKVYTQFGKILEAKKLYIQEGNLHP 694
            F P  G RFG+YA+WWIRQAIRKA+F HS+TIRLPEKV+   GK++EAKKLYIQEGNLHP
Sbjct: 378  FNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHP 437

Query: 693  TKEELARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVWAEQNT 514
            TKEELAR                                             TVWA+QNT
Sbjct: 438  TKEELAR---------------------RVGVTVEKIDKLLFSARIPISMQQTVWADQNT 476

Query: 513  TFQEITADTAIESPDTSVSKQLMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVG 334
            TFQEITAD  +E+ D SV KQLMR+HVLN+LS L PKERRIIRLR+GFEDGEQKSLSE+G
Sbjct: 477  TFQEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIG 536

Query: 333  EIFGLSRERVRQLEIRAFHKLKKCLVSQGLDA 238
            +IFGLS+ERVRQLEIRA +KLKKCLV QGLDA
Sbjct: 537  DIFGLSKERVRQLEIRALYKLKKCLVKQGLDA 568


>gb|AFK38759.1| unknown [Lotus japonicus]
          Length = 311

 Score =  306 bits (783), Expect = 7e-81
 Identities = 161/272 (59%), Positives = 185/272 (68%)
 Frame = -2

Query: 1053 GLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKNYXXXXXXXXXXXXXGSMGLLKSVKK 874
            GL+C  LQTQLR G RS+EKL+ ANLR+V HVAKNY             GSMGL+KSV+K
Sbjct: 55   GLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEK 114

Query: 873  FKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLPEKVYTQFGKILEAKKLYIQEGNLHP 694
            FKPQAGCRF SYAYWWIRQ IR+A+F HS+TIRLPE VYT  GK++EAKK Y +EGN+HP
Sbjct: 115  FKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHP 174

Query: 693  TKEELARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVWAEQNT 514
            TKEELAR                                             TVW +Q+T
Sbjct: 175  TKEELAR---------------------KIGVTVDKLEILLSAARIPLSMQQTVWTDQDT 213

Query: 513  TFQEITADTAIESPDTSVSKQLMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVG 334
            T+QEITADTAIE+PD  V+KQLMRRH  NLL TL P+ERRIIRLRFG EDG +KSLSE+G
Sbjct: 214  TYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIG 273

Query: 333  EIFGLSRERVRQLEIRAFHKLKKCLVSQGLDA 238
             +FGLS+ERVRQLE RA  KLK+CL S GLDA
Sbjct: 274  TVFGLSKERVRQLESRALDKLKQCLASHGLDA 305


>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
            predicted protein [Populus trichocarpa]
          Length = 535

 Score =  287 bits (735), Expect = 3e-75
 Identities = 151/274 (55%), Positives = 181/274 (66%)
 Frame = -2

Query: 1059 SAGLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKNYXXXXXXXXXXXXXGSMGLLKSV 880
            + GL+C  L+ QL  GNRSREKL+ ANLR+V H+AK Y             G++GL+KS+
Sbjct: 277  AVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSI 336

Query: 879  KKFKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLPEKVYTQFGKILEAKKLYIQEGNL 700
            +KFKPQAGCRF +YAYWWIRQ I KAIF HS+TIRLPE VY   GK++EAK+ YIQEGN 
Sbjct: 337  EKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNH 396

Query: 699  HPTKEELARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVWAEQ 520
             PT EE+AR                                             TVW++Q
Sbjct: 397  QPTAEEIAR---------------------RVGIAIDKLEKLLCFTRTPLSMQQTVWSDQ 435

Query: 519  NTTFQEITADTAIESPDTSVSKQLMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSE 340
            NTTFQEITADT IE PD SV+KQLMR+H+  LL+ L  KERRIIRLRFG EDG+QKSLSE
Sbjct: 436  NTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSE 495

Query: 339  VGEIFGLSRERVRQLEIRAFHKLKKCLVSQGLDA 238
            +G +FGLS+ERVRQLE RA +KLK+C+ S GLDA
Sbjct: 496  IGNVFGLSKERVRQLESRALYKLKQCVGSHGLDA 529