BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00000399
         (1105 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD ...   473   e-131
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-...   451   e-124
ref|XP_003590454.1| RNA polymerase sigma factor [Medicago trunca...   439   e-121
gb|ACU14403.1| unknown [Glycine max]                                  293   7e-77
ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago t...   275   2e-71

>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
          Length = 574

 Score =  473 bits (1218), Expect = e-131
 Identities = 248/325 (76%), Positives = 272/325 (83%), Gaps = 2/325 (0%)
 Frame = +2

Query: 137  MESTRSMFCSSPPFPPRTHH-WNTLPSSPYTSVLMLREQAAPTVASWSTSFSAQNFPTSV 313
            ME +R+MFCSSPPFPPRTHH WNTLP S  TSVLMLREQA+PTVASWS++FSAQNFP SV
Sbjct: 1    MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60

Query: 314  LLQEQRDEYRSLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQHLHLWP 493
            LLQEQRDEYR LLH+SKEDKT QA+L+TRQMD V VHEENNT NADQ V DFR+HLH WP
Sbjct: 61   LLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWP 120

Query: 494  RLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASVAEDLK 673
             LQNLL SSQTGEI ASSTLQ V+ D +R  + +QCN VSLA+K LS SKQ +SV EDLK
Sbjct: 121  HLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLK 180

Query: 674  SIKADEDTDDSIPFGLASVGLADPSLGSNKTVRSTRLKERRSKQRKVPKSKVKDDETYLA 853
            SIKAD   DDSIPFGLAS GLADPS+G NKTVRSTRL ERRSKQRKVPKSKV DDETYLA
Sbjct: 181  SIKAD---DDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 237

Query: 854  RKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIARIQDLFKLEELK 1030
            RKDDA ++L VEKK NEE  Q DPL  FL   ETK LLT EQESQLI++IQDL +LEE+K
Sbjct: 238  RKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVK 297

Query: 1031 TSLQSQFGREPTVDEWAESAGLNCQ 1105
            T LQSQFGREPT+ EWAE  GLNC+
Sbjct: 298  TKLQSQFGREPTMAEWAEGVGLNCR 322


>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 571

 Score =  451 bits (1161), Expect = e-124
 Identities = 240/326 (73%), Positives = 270/326 (82%), Gaps = 3/326 (0%)
 Frame = +2

Query: 137  MESTRSMFCSSPPFPPRTHH-WNTLPSSPYTS-VLMLREQAAPTVASWSTSFSAQNFPTS 310
            ME  R+MFCSSPPFPPRTHH W+TLPSS  TS VLML EQA+PTVASWS++FSAQNFP S
Sbjct: 1    MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPAS 60

Query: 311  VLLQEQRDEYRSLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQHLHLW 490
            VLL EQRDEYR LLH+SKEDKT QA+L+TRQMD V+VHEENNT NADQ V DFR+HLH W
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHW 120

Query: 491  PRLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASVAEDL 670
            P LQ  LTSSQ GE+ ASSTL+ V++D ER  + +Q N VSLA+K LS SKQ +SV EDL
Sbjct: 121  PNLQ--LTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDL 178

Query: 671  KSIKADEDTDDSIPFGLASVGLADPSLGSNKTVRSTRLKERRSKQRKVPKSKVKDDETYL 850
            KSIKAD+     +PF LAS  LADPS+G NKTVRSTRL ERRSKQRKVPKSKV DDETYL
Sbjct: 179  KSIKADD-----VPFSLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYL 233

Query: 851  ARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIARIQDLFKLEEL 1027
            ARKDDAQ++L  EKK NEE  Q DPLRLFLW  ETK LLT EQESQLI++IQDL +LEE+
Sbjct: 234  ARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEV 293

Query: 1028 KTSLQSQFGREPTVDEWAESAGLNCQ 1105
            KT+LQSQFGREPT+ EWAE AGLNC+
Sbjct: 294  KTNLQSQFGREPTMAEWAEGAGLNCR 319


>ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
            gi|355479502|gb|AES60705.1| RNA polymerase sigma factor
            [Medicago truncatula]
          Length = 567

 Score =  439 bits (1128), Expect = e-121
 Identities = 235/330 (71%), Positives = 263/330 (79%), Gaps = 7/330 (2%)
 Frame = +2

Query: 137  MESTRSMFCSSPPFPPRTHHWNTLPSSPYTSVLMLREQAAPTVASWSTSFSAQNFPTSVL 316
            MES R+MFCSSP  PPRTHHWNTLPSS YTSVLMLREQ APTV +W TS+S+QNFPTSVL
Sbjct: 1    MESARTMFCSSPLCPPRTHHWNTLPSSSYTSVLMLREQVAPTVTAWCTSYSSQNFPTSVL 60

Query: 317  LQEQRDEYRSLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQHLHLWPR 496
            LQEQ DEYR LLHISK+DKTCQA LNTRQMDMVSV E+N+T N DQ   DFRQHLHL PR
Sbjct: 61   LQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVSVQEKNDTSNTDQVARDFRQHLHLLPR 120

Query: 497  LQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASVAEDLKS 676
            L+NLLTSSQTGE+D SSTLQ         ADSLQCNAVSL       SKQAASVAEDL S
Sbjct: 121  LENLLTSSQTGEMDGSSTLQ--------HADSLQCNAVSL-------SKQAASVAEDLIS 165

Query: 677  IKADEDTDDSIPFG------LASVGLADPSLGSNKTVRSTRLKERRSKQRKVPKSKVKDD 838
            IKADED D+SIPFG      LAS   A+P LG NKTVRSTRL+ERR+K+RKVPK KVKD 
Sbjct: 166  IKADEDADNSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKDK 225

Query: 839  ETYLARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIARIQDLFK 1015
            ETYL  KD A+++L V+KKI++   Q DPL  FL S E+K LLT EQESQL+ +IQ+L +
Sbjct: 226  ETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELLR 285

Query: 1016 LEELKTSLQSQFGREPTVDEWAESAGLNCQ 1105
            LE+LKTSLQSQFGREPT+ EWAE AGLNC+
Sbjct: 286  LEDLKTSLQSQFGREPTMAEWAEGAGLNCR 315


>gb|ACU14403.1| unknown [Glycine max]
          Length = 196

 Score =  293 bits (749), Expect = 7e-77
 Identities = 151/198 (76%), Positives = 166/198 (83%), Gaps = 1/198 (0%)
 Frame = +2

Query: 137 MESTRSMFCSSPPFPPRTHH-WNTLPSSPYTSVLMLREQAAPTVASWSTSFSAQNFPTSV 313
           ME +R+MFCSSPPFPPRTHH WNTLP S  TSVLMLREQA+PTVASWS++FSAQNFP SV
Sbjct: 1   MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60

Query: 314 LLQEQRDEYRSLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQHLHLWP 493
           LLQEQRDEYR LLH+SKEDKT QA+ +TRQMD V VHEENNT NADQ V DFR+HLH WP
Sbjct: 61  LLQEQRDEYRPLLHMSKEDKTSQAMFSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWP 120

Query: 494 RLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASVAEDLK 673
            LQNLL SSQTGEI ASSTLQ V+ D +R  + +QCN VSLA+K LS SKQ +SV EDLK
Sbjct: 121 HLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLK 180

Query: 674 SIKADEDTDDSIPFGLAS 727
           SIKAD   DDSIPFGLAS
Sbjct: 181 SIKAD---DDSIPFGLAS 195


>ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
            gi|355500688|gb|AES81891.1| RNA polymerase sigma factor
            rpoD [Medicago truncatula]
          Length = 557

 Score =  275 bits (702), Expect = 2e-71
 Identities = 173/326 (53%), Positives = 213/326 (65%), Gaps = 9/326 (2%)
 Frame = +2

Query: 155  MFCSSPPFPPRTHHWNTLPSSPYTSVLML-REQAAPTVASWSTSFSAQNFPTSVLLQEQR 331
            MF  S PFP R      LPS    SV+M   +QAAP ++SW T+F     PTSVLLQE R
Sbjct: 1    MFSPSTPFPSRI-----LPSP---SVMMPPHDQAAPALSSWPTTF-----PTSVLLQEHR 47

Query: 332  DEYRSLLHISKED-KTCQAILNTRQMDMVSVHEENNTVNADQE------VHDFRQHLHLW 490
            DEY+ LLH   ED K  QA LNTR  DM S+ E+  T + D +      VH+    LHL 
Sbjct: 48   DEYKPLLHTCNEDNKPPQATLNTRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLR 107

Query: 491  PRLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASVAEDL 670
              LQNLL SS   +  +SS+    +  T  PAD  Q +A++LA++ LS SKQAA+VA++L
Sbjct: 108  CHLQNLLASSPEEDFVSSSSSSSSS-STMLPADGFQWDALTLAKQALSASKQAAAVAQEL 166

Query: 671  KSIKADEDTDDSIPFGLASVGLADPSLGSNKTVRSTRLKERRSKQRKVPKSKVKDDETYL 850
            K +K D+D  DS+P     +GLAD SLG NK VRS RLKERRSKQRKV  SKV DDE YL
Sbjct: 167  KLVKIDDD--DSLP-----LGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYL 219

Query: 851  ARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIARIQDLFKLEEL 1027
             +K + Q+RL +EKK+ E       LRLFLWS ETK LL+ E+ESQLIA+IQDLFKL+E 
Sbjct: 220  TKKSNVQRRLRLEKKLKEGLDGNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKET 279

Query: 1028 KTSLQSQFGREPTVDEWAESAGLNCQ 1105
            K  LQS FGREPT+ EWA+  GL+C+
Sbjct: 280  KIKLQSHFGREPTLAEWADGVGLSCR 305