BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00000258
         (3522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...  1842   0.0  
ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1757   0.0  
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1734   0.0  
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...  1487   0.0  
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...  1466   0.0  

>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score = 1842 bits (4771), Expect = 0.0
 Identities = 908/1122 (80%), Positives = 991/1122 (88%), Gaps = 1/1122 (0%)
 Frame = -2

Query: 3491 MGIPSSETPTVRVFNIPQCATARDLLEFLESKVGPSSVFALEIFSDHSNWKSRGTGRVQF 3312
            M IPSSETPTVRV NIP  ATA DLL +LE+ VG SSVFALEIFSD++NWKSRG GRVQF
Sbjct: 1    MVIPSSETPTVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQF 60

Query: 3311 ETFEAKXXXXXXXXXXXXXXXXXXXXXSEACDDIVARPPLPHNRLDNGVLHAGFVVGPDC 3132
            ET EAK                       + DDI+ RP LP NR++NG L+AGF +GPDC
Sbjct: 61   ETLEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDC 120

Query: 3131 VSVLETWEGVRGWVMPERNRLDFWVYRDGECFRLEIPFENILESNGYCSED-FKLNALLL 2955
            +SVL++WEGVRGWVMPER RLDFWV    +CF+LEIPFENILE +GYCS++  K NALLL
Sbjct: 121  MSVLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLL 180

Query: 2954 TLKYGPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIE 2775
             L+YGPRIYQK AGPNVA KFK DRYRFCKE+FEF+WVRTTDFS LKSIGHSTSF WEI 
Sbjct: 181  KLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIV 240

Query: 2774 EELFASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDSKVPYETLFQLNSLV 2595
            EE F SD+FRSFPLYRENL+DLSLEDGE+FCSPTETVPLV+C  DSK+PYE+LFQLNSLV
Sbjct: 241  EESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLV 300

Query: 2594 HTQKISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLHVXXXXXXX 2415
            HTQKISLASV++ELIDLL SL  ETKAVIFQKLHKMNSTCYEPLK+V+TQLHV       
Sbjct: 301  HTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKS 360

Query: 2414 XXXXXXXXLMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFMRITFVEED 2235
                    L+DNNIMSCHRALITPSKIYCLGPELETSNHVVKHFA YASDFMRITFVEED
Sbjct: 361  VLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEED 420

Query: 2234 WTKLPTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSASQLRSNSV 2055
            W+KLP NAIS +++KG+F++P RTEIYKR+L ILRDGI+IG KRFEFLAFSASQLRSNSV
Sbjct: 421  WSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSV 480

Query: 2054 WLFASNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDVEIIPDIEV 1875
            WLFASNDKVKAADIREWMG FNNIRSVSKCAARMGQLFSSSRQTFE+APQDV++IPDIE+
Sbjct: 481  WLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEI 540

Query: 1874 ASDGINYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAVDXXXXXXX 1695
             SDGI+YCFSDGIGKISQSFARQ+A+KLKLD+++IPSAFQIRYGGYKGVIAVD       
Sbjct: 541  TSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKL 600

Query: 1694 XXXXXXXXFESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLNLLGR 1515
                    FESKNRMLC+TKWSESMPCFLNREIISLLSTLG+KDEALLA+Q++QL LLG+
Sbjct: 601  SLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGK 660

Query: 1514 MLTDREAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQLSDLKSRCR 1335
            MLTD+EAALDVLESL+GADS SILVKMLH FYEP+SEPYLSMMLKAHY YQLSDLKSRCR
Sbjct: 661  MLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCR 720

Query: 1334 IFVPMGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESLRKVDGDDSTRIIVGKVVV 1155
            IFVP GRVLIGCLDETGLLNYGQVFVRITV KTKEKFGDE+LR VDGDDSTRIIVGKVVV
Sbjct: 721  IFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVV 780

Query: 1154 TKNPCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDGDLFFISWD 975
            TKNPCLHPGDIR+LDA+Y EELEEKGL DC+VFPQKG RPHPNECSGGDLDGDLFFISWD
Sbjct: 781  TKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWD 840

Query: 974  KDLIPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVAYMINDTLGAISTAHLVHADREPD 795
            KDLIP QT+NPMDYTGRRPRIMDHKVTLEEI QFFV YMINDTLGAISTAHLVHADRE D
Sbjct: 841  KDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREHD 900

Query: 794  KARSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLY 615
            KA+SRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERF+KPMY+SKGVLGKLY
Sbjct: 901  KAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKLY 960

Query: 614  RAIVESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYG 435
            RA ++SNLQVR + + SEK A+EAYDHQLE +GFEVFLETA S ++MYAQKM +LM+FYG
Sbjct: 961  RATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYG 1020

Query: 434  AETEDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADCQPHEYQPM 255
            A TEDEMLTGNL +RASYLQRDNRRYGDMKDRIL+SVKDLQ EAKEWFE+DCQPHEYQ M
Sbjct: 1021 ATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHEYQLM 1080

Query: 254  ASAWYHVTYHPKYYQENSNFLSFPWIVGDILLHIKSVNSKVH 129
            ASAWYHVTYHPKYY E+S FLSFPWIVGDILLHIKS N K+H
Sbjct: 1081 ASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSAN-KIH 1121



 Score =  179 bits (455), Expect = 4e-42
 Identities = 114/262 (43%), Positives = 140/262 (53%), Gaps = 3/262 (1%)
 Frame = -2

Query: 914  IMDHKVTLEEIQQFFVAYMINDTLGAISTAHLVHADREPDKARSRKCLELAELHSMAVDF 735
            I+ H  +  +I +FFV YMI DTLGAISTAHLVHAD E +KA+SRKCLELAELHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169

Query: 734  AKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLYRAIVESNLQVRCNPIWSEKL 555
            AKT                              G L ++ R                   
Sbjct: 1170 AKT------------------------------GALAEMPRV------------------ 1181

Query: 554  AEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYGAETEDEM-LTGNLHHRASYL 378
                    L+   F  F+E     K MY  K   L   Y A  E  M LT N     ++L
Sbjct: 1182 --------LKPKEFPDFMERFE--KPMYVSK-GVLGKLYRALVESTMQLTSNFVSSGNFL 1230

Query: 377  QRDNRRYGDMKDRILVSVK--DLQREAKEWFEADCQPHEYQPMASAWYHVTYHPKYYQEN 204
                      K  +++++K  DLQ E KEWFE+DCQPHE+Q MASAWYHV +HPKYY ++
Sbjct: 1231 S---------KKHMIINLKLMDLQLEVKEWFESDCQPHEHQLMASAWYHVIHHPKYYHKS 1281

Query: 203  SNFLSFPWIVGDILLHIKSVNS 138
            SNF+SFPWIVGDILL++K  N+
Sbjct: 1282 SNFVSFPWIVGDILLYVKHANT 1303


>ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1262

 Score = 1757 bits (4550), Expect = 0.0
 Identities = 878/1109 (79%), Positives = 961/1109 (86%), Gaps = 2/1109 (0%)
 Frame = -2

Query: 3464 TVRVFNIPQCATARDLLEFLESKVGPSSVFALEIFSDHSNWKSRGTGRVQFETFEAKXXX 3285
            TVRV NIPQ ATA+DLL+FLES VGPS+VFALEIFSD+ NWKSRG GRVQFET +A+   
Sbjct: 12   TVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRA 71

Query: 3284 XXXXXXXXXXXXXXXXXXSEACDDIVARPPLPHNRLDNGVLHAGFVVGPDCVSVLETWEG 3105
                              SE   DI+ RP    +RL NGVL+AGFV+    +SVLE+WEG
Sbjct: 72   LSLSQLNHLLFHRHFLRLSETDADIIFRP---QHRLHNGVLYAGFVLSDHRMSVLESWEG 128

Query: 3104 VRGWVMPERNRLDFWVYRDGECFRLEIPFENILESNGYC-SEDFKLNALLLTLKYGPRIY 2928
            V GWV+P R RLDFWV+ +G+C+RLE  FE+ILES+GYC  ED KLNALLL +K+GPRIY
Sbjct: 129  VAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIY 188

Query: 2927 QKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIEEELFASDIF 2748
            +KK G +VA KF+ DRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEI EE  A D+F
Sbjct: 189  KKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVF 248

Query: 2747 RSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDSKVPYETLFQLNSLVHTQKISLAS 2568
            +SFPLY+ENLRDL+LEDGEEFCS TE VPLV+  S SK+PYE LFQLNSLVHTQKISLAS
Sbjct: 249  KSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLAS 308

Query: 2567 VDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLHVXXXXXXXXXXXXXXXL 2388
            VD+ELIDLL  L EET+AVIF KLHKM+ TCYEPLKFVKTQLHV               L
Sbjct: 309  VDDELIDLLAGLDEETRAVIFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRL 368

Query: 2387 MDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFMRITFVEEDWTKLPTNAI 2208
             D+NIMSCHRALITP+KIYCLGPELETSNHVVKHFA +ASDFMRITFVEE+W KLPTNA+
Sbjct: 369  TDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAV 428

Query: 2207 STSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSASQLRSNSVWLFASNDKV 2028
            ST VQKG+F+KP +TEIYKRILTILRDGI+IG KRFEFLAFSASQLRSNSVWLFASND +
Sbjct: 429  STGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNL 488

Query: 2027 KAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDVEIIPDIEVASDGINYCF 1848
            KAADIREWMGCFNNIRSVSKCAARMGQLFSSS QTFEV  QDVEIIPD+EV SDG++YCF
Sbjct: 489  KAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCF 548

Query: 1847 SDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAVDXXXXXXXXXXXXXXXF 1668
            SDGIGKISQSFARQVAQKLKLD +  PSAFQIRYGG+KGVIAVD               F
Sbjct: 549  SDGIGKISQSFARQVAQKLKLDHT--PSAFQIRYGGFKGVIAVDRRSFRKLSLRSSMLKF 606

Query: 1667 ESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLNLLGRMLTDREAAL 1488
            ESKN MLC+TKWSESMPCFLNREIISLLSTLGVKDE LLAMQ +QL+LLGRMLTD +AAL
Sbjct: 607  ESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAAL 666

Query: 1487 DVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQLSDLKSRCRIFVPMGRVL 1308
            +VLESL+GADSKSILVKMLHEF EP+SEPYLSMMLKA+Y YQLSDLKSRCRIFVP GRVL
Sbjct: 667  EVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVL 726

Query: 1307 IGCLDETGLLNYGQVFVRITVTKTKEKFGDESLRKVDGDDSTRIIVGKVVVTKNPCLHPG 1128
            +GCLDETGLLNYGQVFVRITVTKT+EKFGDE+LRKVDGDD+T IIVGKVVVTKNPCLHPG
Sbjct: 727  VGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVVTKNPCLHPG 786

Query: 1127 DIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPCQTD 948
            DIR+LDAIY EELEEKGL DC+VFPQKG RPHPNECSGGDLDGDLFFISWDKDLIPCQT+
Sbjct: 787  DIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTE 846

Query: 947  NPMDYTGRRPRIMDHKVTLEEIQQFFVAYMINDTLGAISTAHLVHADREPDKARSRKCLE 768
             PMDYTGRRPRIMDHKVTLEEIQQFFV YMINDTLGAISTAHLVHADRE DKA+SRKCLE
Sbjct: 847  APMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLE 906

Query: 767  LAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLYRAIVESNLQ 588
            LAELHSMAVDFAKTGAPA MPR LKPREFPDFMER DKPMY+SKGVLGKLYRAI+ES +Q
Sbjct: 907  LAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQMQ 966

Query: 587  VRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYGAETEDEMLT 408
            +R + +WSEK AEEAYD  LE NGFE FLETAS+ KEMYA+KMS+LM+FYGAETEDEML 
Sbjct: 967  IRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLL 1026

Query: 407  GNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADCQPHEYQPMASAWYHVTY 228
            GNL +RASYLQRDNRRYGDMKDRIL+SVK+LQREAKEWFE  C+PHEY+PMASAWYHVTY
Sbjct: 1027 GNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHEYKPMASAWYHVTY 1086

Query: 227  HPKYY-QENSNFLSFPWIVGDILLHIKSV 144
            HP YY +E+  FLSFPWIVG+ILL I+SV
Sbjct: 1087 HPSYYCRESPCFLSFPWIVGEILLQIRSV 1115


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score = 1734 bits (4490), Expect = 0.0
 Identities = 865/1114 (77%), Positives = 956/1114 (85%), Gaps = 2/1114 (0%)
 Frame = -2

Query: 3464 TVRVFNIPQCATARDLLEFLESKVGPSSVFALEIFSDHSNWKSRGTGRVQFETFEAKXXX 3285
            TVRV NIPQ ATA+DLL+FLES +G S+VFALEIFSD+ NWKSRG GRVQFET +A+   
Sbjct: 11   TVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRA 70

Query: 3284 XXXXXXXXXXXXXXXXXXSEACDDIVARPPLPHNRLDNGVLHAGFVVGPDCVSVLETWEG 3105
                              SE   DI+ RP    +RL NGVL+AGF++    +SVLE+WEG
Sbjct: 71   LSLSQLNQLLFNRHFLRLSETDSDIIFRP---QHRLQNGVLYAGFMLSDHRMSVLESWEG 127

Query: 3104 VRGWVMPERNRLDFWVYRDGECFRLEIPFENILESNGYC-SEDFKLNALLLTLKYGPRIY 2928
            + GWV+P+R RLDFWV+ +G+C+RLE  FE+ILES+GYC  ED +LNALLL +K+GPRIY
Sbjct: 128  IAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIY 187

Query: 2927 QKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIEEELFASDIF 2748
            +KK G +VA  F+ DRYRF KEDFEFLWVRTTDFSPLKSIGHSTSFCWEI EE  ASD+F
Sbjct: 188  KKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVF 247

Query: 2747 RSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDSKVPYETLFQLNSLVHTQKISLAS 2568
             SFPLY+ENLRDL+LED EE CS TE VPLV+  + SK+PYE +FQLNSLVHTQKISLAS
Sbjct: 248  TSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLAS 307

Query: 2567 VDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLHVXXXXXXXXXXXXXXXL 2388
            VD+ELIDLL  L EET+AV+FQKLHKM+ TCYEPLKFVKTQLHV               L
Sbjct: 308  VDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRL 367

Query: 2387 MDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFMRITFVEEDWTKLPTNAI 2208
             D+NIMSCHRALITP+KIYCLGPELETSNHVVKHFA  ASDFMRITFVEE+W KLPTNA+
Sbjct: 368  TDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAV 427

Query: 2207 STSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSASQLRSNSVWLFASNDKV 2028
            ST VQKGIF+KP +TEIYKRILTILRDGI+IG KRFEFLAFSASQLRSNSVWLFASND +
Sbjct: 428  STGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNL 487

Query: 2027 KAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDVEIIPDIEVASDGINYCF 1848
            KAADIREWMGCFNNIRSVSKCAARMGQLFSSS QTFEVA +DVE+IPDIEV SDG++YCF
Sbjct: 488  KAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCF 547

Query: 1847 SDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAVDXXXXXXXXXXXXXXXF 1668
            SDGIGKISQ FARQVAQKL LD +  PSAFQIRYGG+KGVIA+D               F
Sbjct: 548  SDGIGKISQCFARQVAQKLNLDHT--PSAFQIRYGGFKGVIAIDRHSFRKLSLRSSMLKF 605

Query: 1667 ESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLNLLGRMLTDREAAL 1488
            ES NRMLC+TKWSESMPCFLNREIISLL+TLGVKDE LLAMQQ+QL+LLGRMLTD +AAL
Sbjct: 606  ESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAAL 665

Query: 1487 DVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQLSDLKSRCRIFVPMGRVL 1308
            DVLESL+GADSKSILVKMLHEF EP+SEPYLSMMLKA+Y YQLSDLKSRCRIFVP GRVL
Sbjct: 666  DVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVL 725

Query: 1307 IGCLDETGLLNYGQVFVRITVTKTKEKFGDESLRKVDGDDSTRIIVGKVVVTKNPCLHPG 1128
            +GCLDETGLLNYGQVFVRITV KT+E FGDE+LRKVDGDDSTRIIVGKVVVTKNPCLHPG
Sbjct: 726  VGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPG 785

Query: 1127 DIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPCQTD 948
            DIR+LDAIY +ELEE GL DC+VFPQKG RPHPNECSGGDLDGDLFF+SWDKDLIPCQT+
Sbjct: 786  DIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIPCQTE 845

Query: 947  NPMDYTGRRPRIMDHKVTLEEIQQFFVAYMINDTLGAISTAHLVHADREPDKARSRKCLE 768
             PMDYTGRRPRIMDHKVTLEEIQQFFV YMINDTLGAISTAHLVHADRE DKA+SRKCLE
Sbjct: 846  APMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLE 905

Query: 767  LAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLYRAIVESNLQ 588
            LAELHSMAVDFAKTGAPA MPR LKPREFPDFMER DKPMY+SKGVLGKLY AI+ES +Q
Sbjct: 906  LAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYHAIIESQMQ 965

Query: 587  VRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYGAETEDEMLT 408
            +R + +WSEK AEEAYD  LE NGFE FLETAS+ KEMYA+KMS+LM+FYGAETEDEML 
Sbjct: 966  IRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLL 1025

Query: 407  GNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADCQPHEYQPMASAWYHVTY 228
            GN+ +RASYLQRDNRRYGDMKDRIL+SVK+LQREAKEWFE  CQP EY+PMASAWYHVTY
Sbjct: 1026 GNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYKPMASAWYHVTY 1085

Query: 227  HPKYY-QENSNFLSFPWIVGDILLHIKSVNSKVH 129
            H  +Y QE+  FLSFPWIVGDILL I+SVNS V+
Sbjct: 1086 HRSHYCQESPCFLSFPWIVGDILLQIRSVNSFVN 1119


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score = 1487 bits (3849), Expect = 0.0
 Identities = 732/1114 (65%), Positives = 880/1114 (78%), Gaps = 1/1114 (0%)
 Frame = -2

Query: 3473 ETPTVRVFNIPQCATARDLLEFLESKVGPSSVFALEIFSDHSNWKSRGTGRVQFETFEAK 3294
            E PTV+V NIP+ A A++L  FLESK+GP++++ALEI ++H NWKSRG GRVQFET +AK
Sbjct: 5    ERPTVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAK 64

Query: 3293 XXXXXXXXXXXXXXXXXXXXXSEACDDIVARPPLPHNRLDNGVLHAGFVVGPDCVSVLET 3114
                                 S   DDI+ RP  P N++D+GVLH GF+V  DC+ VLE+
Sbjct: 65   RAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLES 124

Query: 3113 WEGVRGWVMPERNRLDFWVYRDGECFRLEIPFENILESNGYCSEDFKLNALLLTLKYGPR 2934
            WEGV+  VMPERNR++FWV +DGE ++LE+PF+++LES+  C    K+NALLL LKY P+
Sbjct: 125  WEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPK 184

Query: 2933 IYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIEEELFASD 2754
            I+QK AGPN+A KF ADRY   KED EFLW+RTTDFS +KS+G STSFCWEI+E   A D
Sbjct: 185  IFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALD 244

Query: 2753 IFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDSKVPYETLFQLNSLVHTQKISL 2574
            IF SFP Y++ L +L+LE GE FCS +  VPLV+C S  K+ YE LFQLNSLVH QKISL
Sbjct: 245  IFASFPYYKD-LTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISL 303

Query: 2573 ASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLHVXXXXXXXXXXXXXX 2394
            A+VD +LI++L +L  +T  +I QKLHK  ST Y+P+ F+K Q H+              
Sbjct: 304  AAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHS 363

Query: 2393 XLMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFMRITFVEEDWTKLPTN 2214
             L +NN+MSCHR L+TPSKIYCLGPELE+SN+VVKH+A YASDF+R++FVEEDW+KLP+N
Sbjct: 364  RLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSN 423

Query: 2213 AISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSASQLRSNSVWLFASND 2034
            A+S S++K  FA PFRTEIY RIL+ILR+GI+IG KRF+FLAFSASQLRSNSVW+FASND
Sbjct: 424  ALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASND 483

Query: 2033 KVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDVEIIPDIEVASDGINY 1854
            KV+  DIREWMGCF  IRSVSKCAARMGQLFSSS QT  V  QDVE+IPDIEV SDG  Y
Sbjct: 484  KVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGY 543

Query: 1853 CFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAVDXXXXXXXXXXXXXX 1674
            CFSDGIGKIS SFA+QVAQK  L Q+  PSAFQIRYGGYKGVIAVD              
Sbjct: 544  CFSDGIGKISLSFAKQVAQKCGLHQT--PSAFQIRYGGYKGVIAVDRNSFRKLSLRSSML 601

Query: 1673 XFESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLNLLGRMLTDREA 1494
             FES+NRML +TKWSES PC+LNREI+SLLSTLGV+DE   A+  EQ++LL +MLT+R+A
Sbjct: 602  KFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQA 661

Query: 1493 ALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQLSDLKSRCRIFVPMGR 1314
            ALDVLES+ G D+K+IL KML + YEP+ EPYLSMML+A+   QLSD+++RCRIFVP  R
Sbjct: 662  ALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKAR 721

Query: 1313 VLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESL-RKVDGDDSTRIIVGKVVVTKNPCL 1137
            VLIGCLDETG+LNYGQV+VR+T+TK + K  ++S  +KVD  D+T +++GKV+VTKNPCL
Sbjct: 722  VLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVD--DTTSVVIGKVIVTKNPCL 779

Query: 1136 HPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPC 957
            HPGDIR+LDA+Y+ ELEEKGL DCI+FPQKG RPHPNECSGGDLDGD FFI WD+ LIP 
Sbjct: 780  HPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPS 839

Query: 956  QTDNPMDYTGRRPRIMDHKVTLEEIQQFFVAYMINDTLGAISTAHLVHADREPDKARSRK 777
            QT+ PMDYT RRPRIMDH VTLEEIQ+FFV YMINDTLG ISTAHLVHADREP+KARS+K
Sbjct: 840  QTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKK 899

Query: 776  CLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLYRAIVES 597
            CLELA LHSMAVDFAKTGAPAEMPR LKP+EFPDFMER DKPMY+S G LGKLYRA + S
Sbjct: 900  CLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIAS 959

Query: 596  NLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYGAETEDE 417
             +  + + +WS  +   AYDH LE +GFE FLE A   KEMYA+KM+TLMNFYGAE+EDE
Sbjct: 960  RVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDE 1019

Query: 416  MLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADCQPHEYQPMASAWYH 237
            MLTGNL ++  YLQRDNRR+ +MKDRIL+SVK LQ+EAKEW    C+PH++Q MASAWYH
Sbjct: 1020 MLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYH 1079

Query: 236  VTYHPKYYQENSNFLSFPWIVGDILLHIKSVNSK 135
            VTYH  +  +  NFLSFPWIVG++LL IKS NS+
Sbjct: 1080 VTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSR 1113


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score = 1466 bits (3795), Expect = 0.0
 Identities = 743/1117 (66%), Positives = 880/1117 (78%), Gaps = 3/1117 (0%)
 Frame = -2

Query: 3476 SETPTVRVFNIPQCATARDLLEFLESKVGPSSVFALEIFSDHSNWKSRGTGRVQFETFEA 3297
            +E P+VRV NIPQ  TA+++L++L +++G  SVFA+EI +   NW SRG GRVQF + E 
Sbjct: 5    AERPSVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEV 64

Query: 3296 KXXXXXXXXXXXXXXXXXXXXXSEACDDIVARPPLPHNRLDNGVLHAGFVVGPDCVSVLE 3117
            K                     SE  DDI+ RP    NR++NGVL+ GF+     + VLE
Sbjct: 65   KHEALSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLE 124

Query: 3116 TWEGVRGWVMPERNRLDFWVYRDGECFR--LEIPFENILESNGYCSEDFKLNALLLTLKY 2943
             WEGVRGW MPER R++FW+ R G+ FR  L + FE+ILE+ GY  +  K+NA++L L+Y
Sbjct: 125  YWEGVRGWFMPERRRIEFWI-RVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRY 183

Query: 2942 GPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIEEELF 2763
            GPRIYQK +GP +A KF  +RY +CKEDF+FLWVRTTD S +KSIG STSFCWEI E L 
Sbjct: 184  GPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLE 243

Query: 2762 ASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDSKVPYETLFQLNSLVHTQK 2583
            ASD FR+FP Y+E++  L LEDGEEFCS +ETVPL+RC SD K+ YE LFQLNSLVHTQK
Sbjct: 244  ASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSLVHTQK 302

Query: 2582 ISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLHVXXXXXXXXXXX 2403
            ISLA+VD++LI +L +L+  T  +I QKLHK+  TCY+PL FVK  L             
Sbjct: 303  ISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLR-------ESLSS 355

Query: 2402 XXXXLMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFMRITFVEEDWTKL 2223
                L +NNIMSCHRALITPSKI+CLGPE ETSN+VVKHFA YASDF+R+TFVEEDW+KL
Sbjct: 356  PPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKL 415

Query: 2222 PTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSASQLRSNSVWLFA 2043
            P NAISTS+Q+GIFAKPFRT IY RIL+ILRDG +IG KRFEFLAFSASQLRSNSVW+FA
Sbjct: 416  PANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFA 475

Query: 2042 SNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDVEIIPDIEVASDG 1863
            SN+ VKA DIR+WMGCF+ IRSVSKCAARMGQLFSSS QTF V  QDVEIIPDIEV +DG
Sbjct: 476  SNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDG 535

Query: 1862 INYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAVDXXXXXXXXXXX 1683
            I+YCFSDGIGKIS SFA+QVA K  L  S  PSAFQIRYGGYKGV+AVD           
Sbjct: 536  IDYCFSDGIGKISLSFAKQVAHKCGL--SHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRS 593

Query: 1682 XXXXFESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLNLLGRMLTD 1503
                F+S+NRML +TKWSESMPC+LNREIISLLSTLGV DE   A+QQ+QL  L +MLT+
Sbjct: 594  SMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTN 653

Query: 1502 REAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQLSDLKSRCRIFVP 1323
            +E+ALDVLE+L+ ADSK+ILV+ML + YEP+ EPYLSMML+A++   L +L+SRCRIFVP
Sbjct: 654  KESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVP 713

Query: 1322 MGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESL-RKVDGDDSTRIIVGKVVVTKN 1146
             GR+LIGCLDE+G+L+YGQV+VRIT+TK + +  D+S  RKVD  +ST  I+G+V VTKN
Sbjct: 714  KGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVD--ESTSTIIGEVAVTKN 771

Query: 1145 PCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDGDLFFISWDKDL 966
            PCLHPGDIR+L+A+YD ELEEKGL DCI+FPQ G RPHPNECSGGDLDGD FFISWD+ L
Sbjct: 772  PCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGL 831

Query: 965  IPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVAYMINDTLGAISTAHLVHADREPDKAR 786
            +PC T+ PMDY G R RIMDH VTLEEIQ+FFV YMINDTLGAISTAHLVHAD EPDKAR
Sbjct: 832  LPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKAR 891

Query: 785  SRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLYRAI 606
            S KCL+LA LHSMAVDFAKTGAPAEMP  LKPREFPDFMER +K MY+S GVLGKLYR I
Sbjct: 892  SEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDI 951

Query: 605  VESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYGAET 426
             +S  Q R N +WS+K+AE  YD  LE  GFE FL  AS  KE Y +KMSTLM++YGA+T
Sbjct: 952  HDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKT 1011

Query: 425  EDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADCQPHEYQPMASA 246
            EDE+LTGNL HR +YLQRDNR+YGD+KDRILVS+K+L++EAKEWFE+ C P E+Q MASA
Sbjct: 1012 EDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASA 1071

Query: 245  WYHVTYHPKYYQENSNFLSFPWIVGDILLHIKSVNSK 135
            WYHVTYHP Y+ E  N LSFPWIVGDILL+IKS+NS+
Sbjct: 1072 WYHVTYHPTYFHERMNCLSFPWIVGDILLNIKSLNSR 1108