BLASTX nr result

ID: Glycyrrhiza23_contig00000034 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00000034
         (691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein C...   169   1e-71
ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein C...   163   5e-70
gb|ACU19827.1| unknown [Glycine max]                                  160   2e-68
ref|XP_002528105.1| chlorophyll A/B binding protein, putative [R...   156   1e-67
ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [P...   160   5e-67

>ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
           chloroplastic-like [Glycine max]
          Length = 290

 Score =  169 bits (427), Expect(2) = 1e-71
 Identities = 82/98 (83%), Positives = 83/98 (84%)
 Frame = +2

Query: 107 GRVQARFGFGTXXXXXXXXXXXGRGSGSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 286
           GRVQARFGFG            G GS SDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK
Sbjct: 25  GRVQARFGFGKKKAAAPKKVSRGSGSSSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 84

Query: 287 PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP 400
           PAEYLQFELDSLDQNLAKN+AGDIIGTRTE ADVKSTP
Sbjct: 85  PAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTP 122



 Score =  127 bits (319), Expect(2) = 1e-71
 Identities = 61/61 (100%), Positives = 61/61 (100%)
 Frame = +1

Query: 508 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 687
           LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK
Sbjct: 154 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 213

Query: 688 R 690
           R
Sbjct: 214 R 214


>ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
           chloroplastic-like [Glycine max]
          Length = 290

 Score =  163 bits (413), Expect(2) = 5e-70
 Identities = 79/98 (80%), Positives = 81/98 (82%)
 Frame = +2

Query: 107 GRVQARFGFGTXXXXXXXXXXXGRGSGSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 286
           GRV ARFGFG            G G  +DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK
Sbjct: 25  GRVHARFGFGKKKAPAQKKASRGSGRDTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 84

Query: 287 PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP 400
           PAEYLQFELDSLDQNLAKN+AGDIIGTRTE ADVKSTP
Sbjct: 85  PAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTP 122



 Score =  127 bits (319), Expect(2) = 5e-70
 Identities = 61/61 (100%), Positives = 61/61 (100%)
 Frame = +1

Query: 508 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 687
           LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK
Sbjct: 154 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 213

Query: 688 R 690
           R
Sbjct: 214 R 214


>gb|ACU19827.1| unknown [Glycine max]
          Length = 290

 Score =  160 bits (404), Expect(2) = 2e-68
 Identities = 78/98 (79%), Positives = 80/98 (81%)
 Frame = +2

Query: 107 GRVQARFGFGTXXXXXXXXXXXGRGSGSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 286
           GRV ARFGFG            G G  + RPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK
Sbjct: 25  GRVHARFGFGKKKAPAQKKASRGSGRDTVRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 84

Query: 287 PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP 400
           PAEYLQFELDSLDQNLAKN+AGDIIGTRTE ADVKSTP
Sbjct: 85  PAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTP 122



 Score =  125 bits (315), Expect(2) = 2e-68
 Identities = 60/61 (98%), Positives = 60/61 (98%)
 Frame = +1

Query: 508 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 687
           LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIE LVIGYIEFQRNAELDPEK
Sbjct: 154 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQRNAELDPEK 213

Query: 688 R 690
           R
Sbjct: 214 R 214


>ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
           gi|223532494|gb|EEF34284.1| chlorophyll A/B binding
           protein, putative [Ricinus communis]
          Length = 285

 Score =  156 bits (395), Expect(2) = 1e-67
 Identities = 79/98 (80%), Positives = 81/98 (82%)
 Frame = +2

Query: 107 GRVQARFGFGTXXXXXXXXXXXGRGSGSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 286
           GRVQARFGFGT                SDRPLWYPGAKAPE+LDGSLVGDYGFDPFGLGK
Sbjct: 26  GRVQARFGFGTKKSAPKRSAKPT----SDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGK 81

Query: 287 PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP 400
           PAEYLQFELDSLDQNLAKN+AGDIIGTRTE ADVKSTP
Sbjct: 82  PAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTP 119



 Score =  126 bits (316), Expect(2) = 1e-67
 Identities = 60/61 (98%), Positives = 61/61 (100%)
 Frame = +1

Query: 508 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 687
           LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN+ELDPEK
Sbjct: 151 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEK 210

Query: 688 R 690
           R
Sbjct: 211 R 211


>ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
           gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|222855110|gb|EEE92657.1|
           light-harvesting complex II protein Lhcb4 [Populus
           trichocarpa]
          Length = 285

 Score =  160 bits (404), Expect(2) = 5e-67
 Identities = 80/98 (81%), Positives = 82/98 (83%)
 Frame = +2

Query: 107 GRVQARFGFGTXXXXXXXXXXXGRGSGSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 286
           GR+QARFGFG             + S  DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK
Sbjct: 26  GRIQARFGFGGKKAPKKSI----KPSTPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGK 81

Query: 287 PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP 400
           PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP
Sbjct: 82  PAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTP 119



 Score =  120 bits (302), Expect(2) = 5e-67
 Identities = 56/61 (91%), Positives = 59/61 (96%)
 Frame = +1

Query: 508 LTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEK 687
           L+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIT LIWIE ++IGYIEFQRNAELDPEK
Sbjct: 151 LSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQRNAELDPEK 210

Query: 688 R 690
           R
Sbjct: 211 R 211


Top