BLASTX nr result

ID: Gardenia21_contig00047824 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00047824
         (364 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDY70488.1| BnaUnng03880D, partial [Brassica napus]               105   1e-20
emb|CDY71657.1| BnaUnng04520D, partial [Brassica napus]               105   1e-20
ref|NP_178797.2| 60S ribosomal protein L2-like protein [Arabidop...   103   4e-20
emb|CDY46990.1| BnaC09g14140D [Brassica napus]                        101   3e-19
ref|XP_006401951.1| hypothetical protein EUTSA_v10013769mg [Eutr...    99   1e-18
ref|XP_009386524.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma...    89   1e-18

>emb|CDY70488.1| BnaUnng03880D, partial [Brassica napus]
          Length = 134

 Score =  105 bits (262), Expect = 1e-20
 Identities = 56/75 (74%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
 Frame = -2

Query: 219 VTREERSNGKA-RPYARLAPRGV*-LTSKHLIGELGNAHEAPAEREGLPGRMPMGAGFFE 46
           +TREERSNGKA RP+   + R +  +   +LIGE GN HEAPAEREGLPGRMPMGAGFFE
Sbjct: 48  LTREERSNGKAIRPFG--SSRSIAHIQISYLIGERGNTHEAPAEREGLPGRMPMGAGFFE 105

Query: 45  KARADSETWDLGLAT 1
           KARADSETWDLGLAT
Sbjct: 106 KARADSETWDLGLAT 120


>emb|CDY71657.1| BnaUnng04520D, partial [Brassica napus]
          Length = 281

 Score =  105 bits (262), Expect = 1e-20
 Identities = 56/75 (74%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
 Frame = -2

Query: 219 VTREERSNGKA-RPYARLAPRGV*-LTSKHLIGELGNAHEAPAEREGLPGRMPMGAGFFE 46
           +TREERSNGKA RP+   + R +  +   +LIGE GN HEAPAEREGLPGRMPMGAGFFE
Sbjct: 195 LTREERSNGKAIRPFG--SSRSIAHIQISYLIGERGNTHEAPAEREGLPGRMPMGAGFFE 252

Query: 45  KARADSETWDLGLAT 1
           KARADSETWDLGLAT
Sbjct: 253 KARADSETWDLGLAT 267


>ref|NP_178797.2| 60S ribosomal protein L2-like protein [Arabidopsis thaliana]
           gi|330251006|gb|AEC06100.1| 60S ribosomal protein L2
           [Arabidopsis thaliana]
          Length = 389

 Score =  103 bits (258), Expect = 4e-20
 Identities = 55/75 (73%), Positives = 61/75 (81%), Gaps = 2/75 (2%)
 Frame = -2

Query: 219 VTREERSNGKA-RPYARLAPRGV*-LTSKHLIGELGNAHEAPAEREGLPGRMPMGAGFFE 46
           +TREERSNGKA RP+   + R +  +   +LIGE GN HEAP EREGLPGRMPMGAGFFE
Sbjct: 303 LTREERSNGKAIRPFG--SSRSIAHIQISYLIGERGNTHEAPTEREGLPGRMPMGAGFFE 360

Query: 45  KARADSETWDLGLAT 1
           KARADSETWDLGLAT
Sbjct: 361 KARADSETWDLGLAT 375


>emb|CDY46990.1| BnaC09g14140D [Brassica napus]
          Length = 319

 Score =  101 bits (251), Expect = 3e-19
 Identities = 54/75 (72%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
 Frame = -2

Query: 219 VTREERSNGKA-RPYARLAPRGV*-LTSKHLIGELGNAHEAPAEREGLPGRMPMGAGFFE 46
           +TREERSNGKA RP+   + R +  +   +LIGE GN HEAPAEREGLPGRMPMGAGFFE
Sbjct: 233 LTREERSNGKAIRPFG--SSRSIAHIQISYLIGERGNTHEAPAEREGLPGRMPMGAGFFE 290

Query: 45  KARADSETWDLGLAT 1
           K  ADSETWDLGLAT
Sbjct: 291 KTGADSETWDLGLAT 305


>ref|XP_006401951.1| hypothetical protein EUTSA_v10013769mg [Eutrema salsugineum]
           gi|557103041|gb|ESQ43404.1| hypothetical protein
           EUTSA_v10013769mg [Eutrema salsugineum]
          Length = 389

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 54/75 (72%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
 Frame = -2

Query: 219 VTREERSNGKA-RPYARLAPRGV*-LTSKHLIGELGNAHEAPAEREGLPGRMPMGAGFFE 46
           +T EERSNGKA RP+   + R +  +   +LIGE GN HEAPAEREGL GRMPMGAGFFE
Sbjct: 303 LTWEERSNGKAIRPFG--SSRSIAHIQISYLIGERGNTHEAPAEREGLQGRMPMGAGFFE 360

Query: 45  KARADSETWDLGLAT 1
           KARADSETWDLGLAT
Sbjct: 361 KARADSETWDLGLAT 375


>ref|XP_009386524.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2,
           mitochondrial [Musa acuminata subsp. malaccensis]
          Length = 378

 Score = 89.0 bits (219), Expect(2) = 1e-18
 Identities = 43/46 (93%), Positives = 43/46 (93%)
 Frame = -2

Query: 138 HLIGELGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLAT 1
           HLIGE GNAHEAPAEREGLPGRM MGAGFFEKARADSET DLGLAT
Sbjct: 319 HLIGERGNAHEAPAEREGLPGRMRMGAGFFEKARADSETXDLGLAT 364



 Score = 30.4 bits (67), Expect(2) = 1e-18
 Identities = 17/22 (77%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 202 VKWQG-KAIRPVGSSRSIAHIQ 140
           V  QG KAI P GSSRSIAHIQ
Sbjct: 296 VSLQGSKAISPCGSSRSIAHIQ 317


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