BLASTX nr result
ID: Gardenia21_contig00045136
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Gardenia21_contig00045136
(318 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_817514.1| RNA polymerase alpha subunit [Coffea arabica] g... 160 3e-37
ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna... 156 7e-36
ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta... 156 7e-36
ref|YP_009040352.1| RNA polymerase alpha subunit [Hyoscyamus nig... 156 7e-36
ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) (... 155 1e-35
gb|AGW97982.1| RNA polymerase alpha subunit (chloroplast) [Ipomo... 153 4e-35
gb|ALI31173.1| RNA polymerase alpha subunit (chloroplast) [Solan... 153 6e-35
gb|AKZ23809.1| RNA polymerase alpha subunit (plastid) [Solanum c... 153 6e-35
ref|YP_009171899.1| RpoA (chloroplast) [Solanum nigrum] gi|83320... 153 6e-35
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast... 153 6e-35
ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [... 153 6e-35
ref|YP_009123556.1| RNA polymerase alpha subunit (plastid) [Phys... 153 6e-35
ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [... 153 6e-35
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [... 153 6e-35
gb|AGJ51282.1| RNA polymerase alpha subunit (chloroplast) [Solan... 153 6e-35
ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum... 153 6e-35
ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [... 153 6e-35
ref|YP_006503823.1| RNA polymerase alpha subunit (chloroplast) [... 153 6e-35
gb|AKZ23810.1| RNA polymerase alpha subunit (plastid) [Solanum r... 152 7e-35
gb|AKZ23804.1| RNA polymerase alpha subunit (plastid) [Ipomoea l... 152 7e-35
>ref|YP_817514.1| RNA polymerase alpha subunit [Coffea arabica]
gi|122153651|sp|A0A367.1|RPOA_COFAR RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Coffea arabica]
gi|116242195|gb|ABJ89710.1| RNA polymerase alpha subunit
[Coffea arabica]
Length = 335
Score = 160 bits (405), Expect = 3e-37
Identities = 81/83 (97%), Positives = 81/83 (97%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREKITVSTRT EWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKITVSTRTLEWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKVAHEYSTIAGIQESV
Sbjct: 62 ITRVKSEKVAHEYSTIAGIQESV 84
>ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna]
gi|41688712|sp|Q8S8V9.1|RPOA_ATRBE RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Atropa belladonna]
gi|20068363|emb|CAC88076.1| RNA polymerase alpha subunit
[Atropa belladonna]
Length = 337
Score = 156 bits (394), Expect = 7e-36
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVKFEKV HEYSTI GIQESV
Sbjct: 62 ITRVKFEKVPHEYSTITGIQESV 84
>ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta]
gi|608608813|gb|AHW52216.1| RNA polymerase alpha subunit
(chloroplast) [Rhazya stricta]
gi|645929242|gb|AIB08766.1| RNA polymerase alpha subunit
(plastid) [Rhazya stricta]
Length = 337
Score = 156 bits (394), Expect = 7e-36
Identities = 78/83 (93%), Positives = 79/83 (95%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREKITVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVKFEKV HEYSTI GIQESV
Sbjct: 62 ITRVKFEKVPHEYSTIKGIQESV 84
>ref|YP_009040352.1| RNA polymerase alpha subunit [Hyoscyamus niger]
gi|537366319|gb|AGU46500.1| RNA polymerase alpha subunit
(plastid) [Hyoscyamus niger]
Length = 337
Score = 156 bits (394), Expect = 7e-36
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVKFEKV HEYSTI GIQESV
Sbjct: 62 ITRVKFEKVPHEYSTITGIQESV 84
>ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) (chloroplast)
[Catharanthus roseus] gi|474452108|gb|AGI51176.1| RNA
polymerase alpha subunit (chloroplast) [Catharanthus
roseus]
Length = 335
Score = 155 bits (391), Expect = 1e-35
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREKITVSTRT +WKCVE RTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKITVSTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVKFEKV HEYSTI GIQESV
Sbjct: 62 ITRVKFEKVPHEYSTIKGIQESV 84
>gb|AGW97982.1| RNA polymerase alpha subunit (chloroplast) [Ipomoea setosa]
Length = 337
Score = 153 bits (387), Expect = 4e-35
Identities = 75/83 (90%), Positives = 79/83 (95%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
+REK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 IREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EK +HEYSTIAGIQESV
Sbjct: 62 ITRVKSEKASHEYSTIAGIQESV 84
>gb|ALI31173.1| RNA polymerase alpha subunit (chloroplast) [Solanum nigrum]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>gb|AKZ23809.1| RNA polymerase alpha subunit (plastid) [Solanum carolinense]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_009171899.1| RpoA (chloroplast) [Solanum nigrum] gi|833204778|gb|AKM21976.1|
RpoA (chloroplast) [Solanum nigrum]
gi|916442354|gb|AKZ23811.1| RNA polymerase alpha subunit
(plastid) [Solanum triflorum]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
gi|108773161|ref|YP_635671.1| RNA polymerase alpha
subunit [Solanum tuberosum]
gi|938339703|ref|YP_009171813.1| RpoA (chloroplast)
[Solanum commersonii] gi|565356831|ref|XP_006345266.1|
PREDICTED: DNA-directed RNA polymerase subunit
alpha-like [Solanum tuberosum]
gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
[Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
polymerase alpha subunit [Solanum bulbocastanum]
gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
(chloroplast) [Solanum tuberosum]
gi|329124614|gb|AEB72171.1| RNA polymerase alpha subunit
(chloroplast) [Solanum tuberosum]
gi|329124701|gb|AEB72257.1| RNA polymerase alpha subunit
(chloroplast) [Solanum tuberosum]
gi|833204652|gb|AKM21890.1| RpoA (chloroplast) [Solanum
commersonii] gi|833204915|gb|AKM22062.1| RpoA
(chloroplast) [Solanum tuberosum]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [Solanum neorickii]
gi|779776699|gb|AJY79137.1| RNA polymerase alpha subunit
(chloroplast) [Solanum neorickii]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_009123556.1| RNA polymerase alpha subunit (plastid) [Physalis peruviana]
gi|757173522|gb|AJN90337.1| RNA polymerase alpha subunit
[Physalis peruviana] gi|916442345|gb|AKZ23807.1| RNA
polymerase alpha subunit (plastid) [Physalis
heterophylla]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [Saracha punctata]
gi|772657870|ref|YP_009128870.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma loxense]
gi|788229498|ref|YP_009123663.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma stenanthum]
gi|788512410|ref|YP_009123188.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia obovata]
gi|803360269|ref|YP_009123382.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma nitidum]
gi|813559832|ref|YP_009132783.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia brachyacantha]
gi|821318364|ref|YP_009139499.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia solanacea]
gi|827046045|ref|YP_009142357.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma tingoanum]
gi|756419301|gb|AJL34440.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia obovata]
gi|756762019|gb|AJM70131.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma nitidum]
gi|757173743|gb|AJN90537.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma stenanthum]
gi|758185536|gb|AJO61611.1| RNA polymerase alpha subunit
(chloroplast) [Saracha punctata]
gi|765365581|gb|AJR30409.1| RNA polymerase alpha subunit
(chloroplast) [Vassobia breviflora]
gi|766544031|gb|AJS14284.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma loxense]
gi|766544117|gb|AJS14368.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma calycinum]
gi|770591288|gb|AJW75080.1| ribosomal protein L16
(chloroplast) [Vassobia dichotoma]
gi|800876083|gb|AKA66563.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia brachyacantha]
gi|817597882|gb|AKF78442.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia solanacea]
gi|820957844|gb|AKH02349.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma tingoanum]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
gi|813424048|ref|YP_009131744.1| RNA polymerase alpha
subunit (chloroplast) [Solanum cheesmaniae]
gi|813424153|ref|YP_009131993.1| RNA polymerase alpha
subunit (chloroplast) [Solanum habrochaites]
gi|813559439|ref|YP_009131827.1| RNA polymerase alpha
subunit (chloroplast) [Solanum chilense]
gi|813559523|ref|YP_009131910.1| RNA polymerase alpha
subunit (chloroplast) [Solanum galapagense]
gi|813559607|ref|YP_009132159.1| RNA polymerase alpha
subunit (chloroplast) [Solanum peruvianum]
gi|813559691|ref|YP_009132242.1| RNA polymerase alpha
subunit (chloroplast) [Solanum pimpinellifolium]
gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
(chloroplast) [Solanum lycopersicum]
gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|89241703|emb|CAJ32426.1| RNA polymerase alpha chain
[Solanum lycopersicum] gi|757813377|gb|AJO25142.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
lycopersicum] gi|779776248|gb|AJY78722.1| RNA polymerase
alpha subunit (chloroplast) [Solanum cheesmaniae]
gi|779776337|gb|AJY78805.1| RNA polymerase alpha subunit
(chloroplast) [Solanum chilense]
gi|779776427|gb|AJY78888.1| RNA polymerase alpha subunit
(chloroplast) [Solanum galapagense]
gi|779776518|gb|AJY78971.1| RNA polymerase alpha subunit
(chloroplast) [Solanum habrochaites]
gi|779776608|gb|AJY79054.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|779776789|gb|AJY79220.1| RNA polymerase alpha subunit
(chloroplast) [Solanum peruvianum]
gi|779776879|gb|AJY79303.1| RNA polymerase alpha subunit
(chloroplast) [Solanum pimpinellifolium]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>gb|AGJ51282.1| RNA polymerase alpha subunit (chloroplast) [Solanum carolinense]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum]
gi|78102570|ref|YP_358710.1| RNA polymerase alpha
subunit [Nicotiana sylvestris]
gi|133409|sp|P06269.1|RPOA_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Nicotiana tabacum]
gi|90110850|sp|Q3C1M3.1|RPOA_NICSY RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Nicotiana sylvestris]
gi|11860|emb|CAA77376.1| RNA polymerase alpha subunit
[Nicotiana tabacum] gi|10442805|gb|AAG15578.1| RNA
polymerase alpha subunit [synthetic construct]
gi|77799597|dbj|BAE46686.1| RNA polymerase alpha subunit
[Nicotiana sylvestris] gi|225228|prf||1211235BK RNA
polymerase alpha
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [Capsicum annuum]
gi|814071816|ref|YP_009122895.1| RNA polymerase alpha
subunit (chloroplast) [Capsicum lycianthoides]
gi|937546713|ref|YP_009169699.1| RpoA (chloroplast)
[Capsicum frutescens] gi|401065964|gb|AFP90808.1| RNA
polymerase alpha subunit (chloroplast) [Capsicum annuum]
gi|641803841|gb|AIA76992.1| RNA polymerase alpha subunit
(chloroplast) (chloroplast) [Capsicum annuum var.
glabriusculum] gi|756141197|gb|AJK90778.1| RNA
polymerase alpha subunit (chloroplast) [Capsicum
lycianthoides] gi|926657983|gb|ALD50134.1| RpoA
(chloroplast) [Capsicum annuum var. glabriusculum]
gi|926658070|gb|ALD50220.1| RpoA (chloroplast) [Capsicum
frutescens] gi|926658157|gb|ALD50306.1| RpoA
(chloroplast) [Capsicum annuum var. annuum]
gi|926658244|gb|ALD50392.1| RpoA (chloroplast) [Capsicum
baccatum var. baccatum]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>ref|YP_006503823.1| RNA polymerase alpha subunit (chloroplast) [Datura stramonium]
gi|350996458|gb|AEQ36970.1| RNA polymerase alpha subunit
(chloroplast) [Datura stramonium]
gi|350996544|gb|AEQ37055.1| RNA polymerase alpha subunit
[Datura stramonium]
Length = 337
Score = 153 bits (386), Expect = 6e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTITGIQESV 84
>gb|AKZ23810.1| RNA polymerase alpha subunit (plastid) [Solanum rostratum]
Length = 337
Score = 152 bits (385), Expect = 7e-35
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
VREK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 VREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EKV HEYSTI GIQESV
Sbjct: 62 ITRVKSEKVPHEYSTIMGIQESV 84
>gb|AKZ23804.1| RNA polymerase alpha subunit (plastid) [Ipomoea leptophylla]
Length = 337
Score = 152 bits (385), Expect = 7e-35
Identities = 75/83 (90%), Positives = 78/83 (93%)
Frame = -3
Query: 250 VREKITVSTRTREWKCVELRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 71
+REK+TVSTRT +WKCVE RTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC
Sbjct: 2 IREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTC 61
Query: 70 ITRVKFEKVAHEYSTIAGIQESV 2
ITRVK EK HEYSTIAGIQESV
Sbjct: 62 ITRVKSEKAPHEYSTIAGIQESV 84