BLASTX nr result
ID: Gardenia21_contig00026597
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Gardenia21_contig00026597
(451 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_817472.1| RNA polymerase beta' subunit [Coffea arabica] g... 73 5e-24
gb|ADO13888.1| RNA polymerase beta subunit, partial (chloroplast... 74 3e-23
gb|AEP25228.1| RNA polymerase C2, partial (chloroplast) [Sarcoba... 73 5e-23
gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Peri... 73 6e-23
ref|YP_004935656.2| RNA polymerase beta'' subunit (chloroplast) ... 73 6e-23
ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans... 73 6e-23
gb|ADO13885.1| RNA polymerase beta subunit, partial (chloroplast... 73 6e-23
gb|ALN11593.1| RNA polymerase beta subunit (chloroplast) [Scutel... 73 8e-23
ref|YP_009162251.1| RNA polymerase beta subunit-2 (chloroplast) ... 73 8e-23
ref|YP_009144505.1| RNA polymerase beta'' subunit (chloroplast) ... 73 8e-23
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 73 8e-23
ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [... 73 8e-23
gb|AKZ23935.1| RNA polymerase beta'' subunit (plastid) [Verbascu... 73 8e-23
ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia ... 73 8e-23
gb|ABV65738.1| RNA polymerase beta'' subunit (chloroplast) [Gunn... 73 8e-23
gb|AHF71996.1| DNA-directed RNA polymerase beta'' chain (chlorop... 73 8e-23
gb|ADD31153.1| RNA polymerase beta'' subunit protein (chloroplas... 73 8e-23
gb|AKZ23937.1| RNA polymerase beta'' subunit (plastid) [Teucrium... 73 8e-23
ref|YP_008965483.1| RNA polymerase beta' subunit [Pyrus spinosa]... 73 8e-23
ref|YP_004842229.1| RNA polymerase beta' subunit [Pyrus pyrifoli... 73 8e-23
>ref|YP_817472.1| RNA polymerase beta' subunit [Coffea arabica]
gi|122153611|sp|A0A325.1|RPOC2_COFAR RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' (chloroplast) [Coffea arabica]
gi|116242154|gb|ABJ89669.1| RNA polymerase beta' subunit
[Coffea arabica]
Length = 1391
Score = 72.8 bits (177), Expect(3) = 5e-24
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 53.5 bits (127), Expect(3) = 5e-24
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSPPNGMMPEK FIQTLV RVLADD
Sbjct: 229 GISVSPPNGMMPEKFFIQTLVGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 5e-24
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>gb|ADO13888.1| RNA polymerase beta subunit, partial (chloroplast) [Dampiera
diversifolia]
Length = 1185
Score = 73.6 bits (179), Expect(3) = 3e-23
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQHL+
Sbjct: 159 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHLV 195
Score = 49.3 bits (116), Expect(3) = 3e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 206 GISVSPRNGMMPERIFIQTLIGRVLADD 233
Score = 32.3 bits (72), Expect(3) = 3e-23
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
LVVRRTDCGTVRGI
Sbjct: 194 LVVRRTDCGTVRGI 207
>gb|AEP25228.1| RNA polymerase C2, partial (chloroplast) [Sarcobatus vermiculatus]
Length = 1092
Score = 72.8 bits (177), Expect(3) = 5e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 143 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 179
Score = 50.4 bits (119), Expect(3) = 5e-23
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPEK+FIQTL+ RVLADD
Sbjct: 190 GISVSPRNGMMPEKIFIQTLIGRVLADD 217
Score = 31.2 bits (69), Expect(3) = 5e-23
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGT+RGI
Sbjct: 178 IVVRRTDCGTIRGI 191
>gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Perilla frutescens]
Length = 1398
Score = 72.8 bits (177), Expect(3) = 6e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.7 bits (117), Expect(3) = 6e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPENGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 6e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_004935656.2| RNA polymerase beta'' subunit (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta''
subunit (chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 72.8 bits (177), Expect(3) = 6e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.7 bits (117), Expect(3) = 6e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPQNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 6e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans]
gi|558697185|gb|AHA84940.1| RNA polymerase beta''
subunit [Ajuga reptans]
Length = 1377
Score = 72.8 bits (177), Expect(3) = 6e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 178 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 214
Score = 49.7 bits (117), Expect(3) = 6e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 225 GISVSPQNGMMPERIFIQTLIGRVLADD 252
Score = 31.6 bits (70), Expect(3) = 6e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 213 IVVRRTDCGTVRGI 226
>gb|ADO13885.1| RNA polymerase beta subunit, partial (chloroplast) [Nymphoides
peltata]
Length = 1115
Score = 72.8 bits (177), Expect(3) = 6e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 158 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 194
Score = 49.7 bits (117), Expect(3) = 6e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SV+P NGMMPEK+FIQTL+ RVLADD
Sbjct: 205 GISVNPTNGMMPEKIFIQTLIGRVLADD 232
Score = 31.6 bits (70), Expect(3) = 6e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 193 IVVRRTDCGTVRGI 206
>gb|ALN11593.1| RNA polymerase beta subunit (chloroplast) [Scutellaria insignis]
Length = 1401
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_009162251.1| RNA polymerase beta subunit-2 (chloroplast) [Scutellaria
baicalensis] gi|827345829|gb|AKJ77130.1| RNA polymerase
beta subunit-2 (chloroplast) [Scutellaria baicalensis]
Length = 1401
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_009144505.1| RNA polymerase beta'' subunit (chloroplast) [Rosmarinus
officinalis] gi|827345133|gb|AKJ76717.1| RNA polymerase
beta'' subunit (chloroplast) [Rosmarinus officinalis]
Length = 1395
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPGNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta
subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPGNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [Premna microphylla]
gi|748013894|gb|AJE28364.1| RNA polymerase beta' subunit
(chloroplast) [Premna microphylla]
Length = 1394
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>gb|AKZ23935.1| RNA polymerase beta'' subunit (plastid) [Verbascum thapsus]
Length = 1389
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia takesimensis]
gi|744673729|gb|AJD00714.1| RNA polymerase beta''
subunit [Scrophularia takesimensis]
Length = 1389
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>gb|ABV65738.1| RNA polymerase beta'' subunit (chloroplast) [Gunnera manicata]
Length = 1386
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>gb|AHF71996.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Rosa
odorata var. gigantea]
Length = 1384
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 178 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 214
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 225 GISVSPRNGMMPERIFIQTLIGRVLADD 252
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 213 IVVRRTDCGTVRGI 226
>gb|ADD31153.1| RNA polymerase beta'' subunit protein (chloroplast) [Ilex cornuta]
Length = 1384
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>gb|AKZ23937.1| RNA polymerase beta'' subunit (plastid) [Teucrium canadense]
Length = 1378
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 182 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 218
Score = 49.3 bits (116), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 229 GISVSPRNGMMPERIFIQTLIGRVLADD 256
Score = 31.6 bits (70), Expect(3) = 8e-23
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGTVRGI
Sbjct: 217 IVVRRTDCGTVRGI 230
>ref|YP_008965483.1| RNA polymerase beta' subunit [Pyrus spinosa]
gi|565666455|emb|CDI73555.1| RNA polymerase beta'
subunit [Pyrus spinosa]
Length = 1373
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 178 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 214
Score = 49.7 bits (117), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 225 GISVSPQNGMMPERIFIQTLIGRVLADD 252
Score = 31.2 bits (69), Expect(3) = 8e-23
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGT+RGI
Sbjct: 213 IVVRRTDCGTIRGI 226
>ref|YP_004842229.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
gi|345433551|dbj|BAK69373.1| RNA polymerase beta'
subunit [Pyrus pyrifolia]
Length = 1373
Score = 72.8 bits (177), Expect(3) = 8e-23
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 229 YIISCYGARKGVVDTTVRTSDAGYLTRRLVEVVQHLL 339
YIISCYGARKGVVDT VRTSDAGYLTRRLVEVVQH++
Sbjct: 178 YIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV 214
Score = 49.7 bits (117), Expect(3) = 8e-23
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 368 GYSVSPPNGMMPEKLFIQTLVSRVLADD 451
G SVSP NGMMPE++FIQTL+ RVLADD
Sbjct: 225 GISVSPQNGMMPERIFIQTLIGRVLADD 252
Score = 31.2 bits (69), Expect(3) = 8e-23
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 333 LVVRRTDCGTVRGI 374
+VVRRTDCGT+RGI
Sbjct: 213 IVVRRTDCGTIRGI 226