BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00023119
         (680 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD93813.1| RNA polymerase beta chain, partial (chloroplast) ...   342   2e-91
ref|YP_817472.1| RNA polymerase beta' subunit [Coffea arabica] g...   342   2e-91
gb|AEM44885.1| RNA polymerase beta chain, partial [Strychnos spi...   293   7e-77
gb|ADD31152.1| RNA polymerase beta'' subunit protein (chloroplas...   292   1e-76
ref|YP_009108749.1| RNA polymerase beta chain [Oncinotis tenuilo...   291   3e-76
ref|YP_009108664.1| RNA polymerase beta chain [Nerium oleander] ...   286   1e-74
gb|AIW05171.1| RNA polymerase beta chain [Aganosma cymosa]            284   4e-74
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras...   284   4e-74
ref|YP_358662.2| RNA polymerase beta'' subunit [Nicotiana sylves...   284   4e-74
prf||1211235K rpoC-like ORF 862                                       284   4e-74
gb|AIW05934.1| RNA polymerase beta chain [Wrightia natalensis]        283   5e-74
gb|AIW05425.1| RNA polymerase beta chain [Neobracea bahamensis]       283   5e-74
gb|AGW04580.1| RNA polymerase beta chain [Marsdenia astephanoides]    283   5e-74
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras...   283   7e-74
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ...   283   7e-74
ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana toment...   283   7e-74
gb|AGW04277.2| RNA polymerase beta chain [Secamone afzelii]           283   9e-74
gb|AKZ23929.1| RNA polymerase beta'' subunit (plastid) [Solanum ...   281   2e-73
ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [H...   281   2e-73
ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast)...   281   2e-73

>gb|ABD93813.1| RNA polymerase beta chain, partial (chloroplast) [Coffea arabica]
          Length = 850

 Score =  342 bits (876), Expect = 2e-91
 Identities = 174/201 (86%), Positives = 178/201 (88%)
 Frame = -2

Query: 604 LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
           +VNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQD           SFVEIRTNGLIRHF
Sbjct: 345 VVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSSEEAPASFVEIRTNGLIRHF 404

Query: 424 LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
           LRIDLVKSPISYIVKRNDP           DCTNINPFSSIYSYSKARIQQFLNPNQGTI
Sbjct: 405 LRIDLVKSPISYIVKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKARIQQFLNPNQGTI 464

Query: 244 HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
           HTLLNKN+EFQSLIILLSSNC RMGPFAGVKYHNVIK+SI+NKKDPRISIRNSLGPLGSA
Sbjct: 465 HTLLNKNREFQSLIILLSSNCSRMGPFAGVKYHNVIKESIKNKKDPRISIRNSLGPLGSA 524

Query: 64  PPIANFFSFSHLLTHNQILVT 2
           PPIANFFSFSHLLTHNQILVT
Sbjct: 525 PPIANFFSFSHLLTHNQILVT 545


>ref|YP_817472.1| RNA polymerase beta' subunit [Coffea arabica]
            gi|122153611|sp|A0A325.1|RPOC2_COFAR RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            (chloroplast) [Coffea arabica]
            gi|116242154|gb|ABJ89669.1| RNA polymerase beta' subunit
            [Coffea arabica]
          Length = 1391

 Score =  342 bits (876), Expect = 2e-91
 Identities = 174/201 (86%), Positives = 178/201 (88%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQD           SFVEIRTNGLIRHF
Sbjct: 811  VVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSSEEAPASFVEIRTNGLIRHF 870

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDLVKSPISYIVKRNDP           DCTNINPFSSIYSYSKARIQQFLNPNQGTI
Sbjct: 871  LRIDLVKSPISYIVKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKARIQQFLNPNQGTI 930

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLNKN+EFQSLIILLSSNC RMGPFAGVKYHNVIK+SI+NKKDPRISIRNSLGPLGSA
Sbjct: 931  HTLLNKNREFQSLIILLSSNCSRMGPFAGVKYHNVIKESIKNKKDPRISIRNSLGPLGSA 990

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPIANFFSFSHLLTHNQILVT
Sbjct: 991  PPIANFFSFSHLLTHNQILVT 1011


>gb|AEM44885.1| RNA polymerase beta chain, partial [Strychnos spinosa]
          Length = 467

 Score =  293 bits (750), Expect = 7e-77
 Identities = 155/200 (77%), Positives = 161/200 (80%)
 Frame = -2

Query: 604 LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
           +VNYILYGNGKPIRGISD SIQLVRTCLVLNWDQD           SFVEIRTNGLIRHF
Sbjct: 11  VVNYILYGNGKPIRGISDKSIQLVRTCLVLNWDQDKKSSSSEEARASFVEIRTNGLIRHF 70

Query: 424 LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
           LRIDLVKSPISYI KRN P           DCTNINPFSSIYSYSKARIQQFLNPNQGTI
Sbjct: 71  LRIDLVKSPISYIGKRNHPSVSALLSDNGSDCTNINPFSSIYSYSKARIQQFLNPNQGTI 130

Query: 244 HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
           HTLLN+NKEFQSL ILLSSNC RMGPF  VKYHNVIK+SI  KKD  I IRNSLGPLGSA
Sbjct: 131 HTLLNRNKEFQSLRILLSSNCSRMGPFNDVKYHNVIKESI--KKDTLIPIRNSLGPLGSA 188

Query: 64  PPIANFFSFSHLLTHNQILV 5
           PPI  FF F HL+T N+IL+
Sbjct: 189 PPIGIFFLFYHLITQNEILL 208


>gb|ADD31152.1| RNA polymerase beta'' subunit protein (chloroplast) [Ehretia
            acuminata]
          Length = 1381

 Score =  292 bits (748), Expect = 1e-76
 Identities = 154/201 (76%), Positives = 164/201 (81%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVL+WDQ+           SFVEIRTNGLIRHF
Sbjct: 812  VVNYILYGNGKPIRGISDTSIQLVRTCLVLSWDQETKSSSIEEARASFVEIRTNGLIRHF 871

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDLVKSPISYI KRNDP           DCTNINPFSSIYSYSK RIQQ LN NQGTI
Sbjct: 872  LRIDLVKSPISYIGKRNDPLDSRLLSDNGSDCTNINPFSSIYSYSKGRIQQSLNQNQGTI 931

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL SSNCFRMGPF  VKYH+VIK+S+  KKD RI IRNSLGPLG+A
Sbjct: 932  HTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHSVIKESM--KKDSRIPIRNSLGPLGTA 989

Query: 64   PPIANFFSFSHLLTHNQILVT 2
              IANF+SF HL+THNQILVT
Sbjct: 990  LQIANFYSFYHLITHNQILVT 1010


>ref|YP_009108749.1| RNA polymerase beta chain [Oncinotis tenuiloba]
            gi|702075714|gb|AIW05595.1| RNA polymerase beta chain
            [Oncinotis tenuiloba]
          Length = 1385

 Score =  291 bits (745), Expect = 3e-76
 Identities = 152/201 (75%), Positives = 163/201 (81%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NYILYGNGKPIRGI DT+IQLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 806  VINYILYGNGKPIRGIYDTTIQLVRTCLVLNWDQDKKSSSGEEARASFVEIRINGLIRHF 865

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDL KSPIS+I KRNDP           D TNINPFSSIYSYSKARIQQFLNPNQGTI
Sbjct: 866  LRIDLAKSPISHIGKRNDPSGSGLLSDNGSDYTNINPFSSIYSYSKARIQQFLNPNQGTI 925

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSSNC RMGPF  +KYHN IK+SI ++KDP I IRNSLGPLGSA
Sbjct: 926  HTLLNRNKEFQPLIILLSSNCSRMGPFNDLKYHNGIKESI-HQKDPLIPIRNSLGPLGSA 984

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI NF  FSHL+THNQIL+T
Sbjct: 985  PPIDNFDLFSHLITHNQILLT 1005


>ref|YP_009108664.1| RNA polymerase beta chain [Nerium oleander]
            gi|290489546|gb|ADD31157.1| RNA polymerase beta'' subunit
            protein (chloroplast) [Nerium oleander]
            gi|702075628|gb|AIW05510.1| RNA polymerase beta chain
            [Nerium oleander]
          Length = 1385

 Score =  286 bits (731), Expect = 1e-74
 Identities = 150/201 (74%), Positives = 161/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NYILYGNGKPIRGI DT+IQLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 806  VINYILYGNGKPIRGIYDTTIQLVRTCLVLNWDQDKKSSSGEEARASFVEIRINGLIRHF 865

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI L KSPISYI KRNDP           D TNINPFSSIYSYSKARIQQFLNPNQGTI
Sbjct: 866  LRIYLAKSPISYIGKRNDPSGSGLLSDNGSDYTNINPFSSIYSYSKARIQQFLNPNQGTI 925

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSSNC RMGPF  +KYHN IK+SI ++KDP I IRNSLGPLGSA
Sbjct: 926  HTLLNRNKEFQPLIILLSSNCSRMGPFNDLKYHNGIKESI-HQKDPLIPIRNSLGPLGSA 984

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI NF  FSHL+TH +IL+T
Sbjct: 985  PPIDNFDLFSHLITHKKILLT 1005


>gb|AIW05171.1| RNA polymerase beta chain [Aganosma cymosa]
          Length = 1385

 Score =  284 bits (726), Expect = 4e-74
 Identities = 149/201 (74%), Positives = 160/201 (79%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NYILYGNGKPIRGI DT+IQLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 806  VINYILYGNGKPIRGIYDTTIQLVRTCLVLNWDQDKKSSSAEEARASFVEIRINGLIRHF 865

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDL KSPISYI KRNDP           D TNINPFSSIYSYSKARIQQ LNPNQGTI
Sbjct: 866  LRIDLAKSPISYIGKRNDPSGSGLLADNGSDYTNINPFSSIYSYSKARIQQSLNPNQGTI 925

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSSNC  MGPF  +KYHN IK+SI ++KDP I IRNSLGPLGS+
Sbjct: 926  HTLLNRNKEFQPLIILLSSNCSLMGPFNDLKYHNGIKESI-HQKDPPIPIRNSLGPLGSS 984

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI N   FSHL+THNQIL+T
Sbjct: 985  PPIDNLDFFSHLITHNQILLT 1005


>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            (chloroplast) [Nicotiana sylvestris]
            gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            (chloroplast) [Nicotiana tabacum]
            gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit
            [Nicotiana tabacum] gi|77799548|dbj|BAE46637.1| RNA
            polymerase beta'' subunit [Nicotiana sylvestris]
          Length = 1392

 Score =  284 bits (726), Expect = 4e-74
 Identities = 149/201 (74%), Positives = 162/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 812  IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 871

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI+LVKSPISYI KRNDP           DCTNINPFSSIYSYSKA+IQQ +N  QGTI
Sbjct: 872  LRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTI 931

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIKKSI  KKDP I IRNSLGPLG++
Sbjct: 932  HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI--KKDPLIPIRNSLGPLGTS 989

Query: 64   PPIANFFSFSHLLTHNQILVT 2
             PI NF+S  HL+THNQILVT
Sbjct: 990  LPIENFYSSYHLITHNQILVT 1010


>ref|YP_358662.2| RNA polymerase beta'' subunit [Nicotiana sylvestris]
            gi|126165915|ref|NP_054486.2| RNA polymerase beta''
            subunit [Nicotiana tabacum]
          Length = 1388

 Score =  284 bits (726), Expect = 4e-74
 Identities = 149/201 (74%), Positives = 162/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 808  IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 867

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI+LVKSPISYI KRNDP           DCTNINPFSSIYSYSKA+IQQ +N  QGTI
Sbjct: 868  LRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTI 927

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIKKSI  KKDP I IRNSLGPLG++
Sbjct: 928  HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI--KKDPLIPIRNSLGPLGTS 985

Query: 64   PPIANFFSFSHLLTHNQILVT 2
             PI NF+S  HL+THNQILVT
Sbjct: 986  LPIENFYSSYHLITHNQILVT 1006


>prf||1211235K rpoC-like ORF 862
          Length = 862

 Score =  284 bits (726), Expect = 4e-74
 Identities = 149/201 (74%), Positives = 162/201 (80%)
 Frame = -2

Query: 604 LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
           +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 282 IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 341

Query: 424 LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
           LRI+LVKSPISYI KRNDP           DCTNINPFSSIYSYSKA+IQQ +N  QGTI
Sbjct: 342 LRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTI 401

Query: 244 HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
           HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIKKSI  KKDP I IRNSLGPLG++
Sbjct: 402 HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI--KKDPLIPIRNSLGPLGTS 459

Query: 64  PPIANFFSFSHLLTHNQILVT 2
            PI NF+S  HL+THNQILVT
Sbjct: 460 LPIENFYSSYHLITHNQILVT 480


>gb|AIW05934.1| RNA polymerase beta chain [Wrightia natalensis]
          Length = 1393

 Score =  283 bits (725), Expect = 5e-74
 Identities = 148/201 (73%), Positives = 160/201 (79%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NYILYGNGKPIRGI DT+IQLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 809  VINYILYGNGKPIRGIYDTTIQLVRTCLVLNWDQDKKSSSGEEARASFVEIRINGLIRHF 868

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDL KSPISYI KRNDP           D TNINPFSSIYSYSKARIQQFLNPNQGTI
Sbjct: 869  LRIDLAKSPISYIGKRNDPSGSGLLSDNGSDYTNINPFSSIYSYSKARIQQFLNPNQGTI 928

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSSNC RMG F  +KYHN IK+SI ++KDP I IRNSLGPLG+A
Sbjct: 929  HTLLNRNKEFQPLIILLSSNCSRMGSFNDLKYHNGIKESI-HQKDPLIPIRNSLGPLGAA 987

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI NF+ F  L+THN IL+T
Sbjct: 988  PPIDNFYLFYRLITHNPILLT 1008


>gb|AIW05425.1| RNA polymerase beta chain [Neobracea bahamensis]
          Length = 1385

 Score =  283 bits (725), Expect = 5e-74
 Identities = 148/201 (73%), Positives = 160/201 (79%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NY+LYGNGKPIRGI DT+IQLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 806  VINYLLYGNGKPIRGIYDTTIQLVRTCLVLNWDQDKKSSSGEEARASFVEIRINGLIRHF 865

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDL KSPISYI KRNDP           D TNINPFSSIYSYSK RIQQFLNPNQGTI
Sbjct: 866  LRIDLAKSPISYIGKRNDPSGSGLLSDNRSDYTNINPFSSIYSYSKERIQQFLNPNQGTI 925

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSSN FRMGPF  +KYHN IK+SI ++KDP I IRN LGPLG+A
Sbjct: 926  HTLLNRNKEFQPLIILLSSNSFRMGPFNDLKYHNGIKESI-HQKDPPIPIRNWLGPLGAA 984

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI N   FSHL+THNQIL+T
Sbjct: 985  PPIDNLDLFSHLITHNQILLT 1005


>gb|AGW04580.1| RNA polymerase beta chain [Marsdenia astephanoides]
          Length = 1369

 Score =  283 bits (725), Expect = 5e-74
 Identities = 146/201 (72%), Positives = 160/201 (79%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NY+LYG GKPIRGI DT++QLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 806  VINYMLYGKGKPIRGIYDTTLQLVRTCLVLNWDQDKKSSSGEEARASFVEIRINGLIRHF 865

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDLVKSPISYI KRNDP           D  NINPF SIYS+SK RIQQFLNPNQGTI
Sbjct: 866  LRIDLVKSPISYIGKRNDPSGSGLLSDNGPDYININPFGSIYSHSKTRIQQFLNPNQGTI 925

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSS C RMGPF  +KYHN IK+SI +++DP I IRNSLGPLGSA
Sbjct: 926  HTLLNRNKEFQPLIILLSSKCSRMGPFNDLKYHNGIKESI-HQRDPLIPIRNSLGPLGSA 984

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI NFF FSHL+THNQIL+T
Sbjct: 985  PPIENFFLFSHLITHNQILLT 1005


>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            (chloroplast) [Nicotiana tomentosiformis]
            gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit
            [Nicotiana tomentosiformis]
          Length = 1392

 Score =  283 bits (724), Expect = 7e-74
 Identities = 149/201 (74%), Positives = 162/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 812  IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 871

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI+LVKSPISYI KRNDP           DCTNINPFSSIYSYSKA+IQQ LN  QGTI
Sbjct: 872  LRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTI 931

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIK+SI  KKDP I IRNSLGPLG++
Sbjct: 932  HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKESI--KKDPLIPIRNSLGPLGTS 989

Query: 64   PPIANFFSFSHLLTHNQILVT 2
             PI NF+S  HL+THNQILVT
Sbjct: 990  LPIENFYSSYHLITHNQILVT 1010


>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
            gi|347453891|gb|AEO95549.1| RNA polymerase beta'' subunit
            (chloroplast) [Nicotiana undulata]
            gi|347454002|gb|AEO95659.1| RNA polymerase beta'' subunit
            [synthetic construct]
          Length = 1392

 Score =  283 bits (724), Expect = 7e-74
 Identities = 148/201 (73%), Positives = 161/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 812  IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 871

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI+LVKSPISYI KRNDP            CTNINPFSSIYSYSKA+IQQ LN  QGTI
Sbjct: 872  LRINLVKSPISYIGKRNDPSGSGLLSDNGSACTNINPFSSIYSYSKAKIQQSLNQPQGTI 931

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIK+SI  KKDP I IRNSLGPLG++
Sbjct: 932  HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKESI--KKDPLIPIRNSLGPLGTS 989

Query: 64   PPIANFFSFSHLLTHNQILVT 2
             PI NF+S  HL+THNQILVT
Sbjct: 990  LPIENFYSSYHLITHNQILVT 1010


>ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
          Length = 1388

 Score =  283 bits (724), Expect = 7e-74
 Identities = 149/201 (74%), Positives = 162/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 808  IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 867

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI+LVKSPISYI KRNDP           DCTNINPFSSIYSYSKA+IQQ LN  QGTI
Sbjct: 868  LRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTI 927

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIK+SI  KKDP I IRNSLGPLG++
Sbjct: 928  HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKESI--KKDPLIPIRNSLGPLGTS 985

Query: 64   PPIANFFSFSHLLTHNQILVT 2
             PI NF+S  HL+THNQILVT
Sbjct: 986  LPIENFYSSYHLITHNQILVT 1006


>gb|AGW04277.2| RNA polymerase beta chain [Secamone afzelii]
          Length = 1380

 Score =  283 bits (723), Expect = 9e-74
 Identities = 146/201 (72%), Positives = 158/201 (78%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            ++NYILYG GKPIRGI DT++QLVRTCLVLNWDQD           SFVEIR NGLIRHF
Sbjct: 806  VINYILYGKGKPIRGIYDTTLQLVRTCLVLNWDQDKKSSSGEEARASFVEIRINGLIRHF 865

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRIDL KSPISYI KRNDP           D  NINPF SIYSYSKARIQQFLNPNQGTI
Sbjct: 866  LRIDLAKSPISYIGKRNDPSGSGLLSHNGSDYININPFCSIYSYSKARIQQFLNPNQGTI 925

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKEFQ LIILLSSNC RMGPF  +KYHN IK    +++DP I IRNSLGPLGSA
Sbjct: 926  HTLLNRNKEFQPLIILLSSNCSRMGPFNDLKYHNGIK----DQRDPLIPIRNSLGPLGSA 981

Query: 64   PPIANFFSFSHLLTHNQILVT 2
            PPI NF+ FSHL+THNQIL+T
Sbjct: 982  PPIENFYLFSHLITHNQILLT 1002


>gb|AKZ23929.1| RNA polymerase beta'' subunit (plastid) [Solanum triflorum]
          Length = 1392

 Score =  281 bits (720), Expect = 2e-73
 Identities = 148/201 (73%), Positives = 161/201 (80%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXSFVEIRTNGLIRHF 425
            +VNYILYGNGKPIRGISDTSIQLVRTCLVLNW+QD           SFVEIRTNGLIRHF
Sbjct: 812  IVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHF 871

Query: 424  LRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGTI 245
            LRI+LVKSPISYI KRNDP           DCTNINPFS+IYSYSKA+IQQ LN  QGTI
Sbjct: 872  LRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSAIYSYSKAKIQQSLNQPQGTI 931

Query: 244  HTLLNKNKEFQSLIILLSSNCFRMGPFAGVKYHNVIKKSIQNKKDPRISIRNSLGPLGSA 65
            HTLLN+NKE QSLIIL ++NC RMGPF  VKYH+VIK+SI  KKDP I IRNSLGPLG+ 
Sbjct: 932  HTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKESI--KKDPLIPIRNSLGPLGTC 989

Query: 64   PPIANFFSFSHLLTHNQILVT 2
             PI NF+S  HL+THNQILVT
Sbjct: 990  LPIENFYSSYHLITHNQILVT 1010


>ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [Hesperelaea palmeri]
            gi|725798276|emb|CED79752.1| RNA polymerase beta'' chain
            (chloroplast) [Hesperelaea palmeri]
          Length = 1394

 Score =  281 bits (720), Expect = 2e-73
 Identities = 152/202 (75%), Positives = 160/202 (79%), Gaps = 2/202 (0%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXS-FVEIRTNGLIRH 428
            +VNYILYGNGKPIRGISDT IQLVRTCLVLNWDQD           + FVEIRTNGLIRH
Sbjct: 814  VVNYILYGNGKPIRGISDTDIQLVRTCLVLNWDQDKKKSSSSEEARASFVEIRTNGLIRH 873

Query: 427  FLRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGT 248
            FLRIDLVKSPISYI KRNDP           DCTNINPFSSI  YSKARIQQ LN NQGT
Sbjct: 874  FLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI--YSKARIQQSLNQNQGT 931

Query: 247  IHTLLNKNKEFQSLIILLSSNCFRMGPFAGV-KYHNVIKKSIQNKKDPRISIRNSLGPLG 71
            IHTLLN+N  FQSLIIL SSNCFRMGPF  V KYHNVIK+SIQ  KDPRI I+NSLGP G
Sbjct: 932  IHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPFG 991

Query: 70   SAPPIANFFSFSHLLTHNQILV 5
            +A PI NF+SF HL+THNQILV
Sbjct: 992  TAFPIVNFYSFYHLITHNQILV 1013


>ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
            gi|363413081|gb|ADA69916.2| RNA polymerase beta II
            subunit (chloroplast) [Olea europaea]
          Length = 1390

 Score =  281 bits (720), Expect = 2e-73
 Identities = 152/202 (75%), Positives = 160/202 (79%), Gaps = 2/202 (0%)
 Frame = -2

Query: 604  LVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDXXXXXXXXXXXS-FVEIRTNGLIRH 428
            +VNYILYGNGKPIRGISDT IQLVRTCLVLNWDQD           + FVEIRTNGLIRH
Sbjct: 810  VVNYILYGNGKPIRGISDTDIQLVRTCLVLNWDQDKKKSSSSEEARASFVEIRTNGLIRH 869

Query: 427  FLRIDLVKSPISYIVKRNDPXXXXXXXXXXXDCTNINPFSSIYSYSKARIQQFLNPNQGT 248
            FLRIDLVKSPISYI KRNDP           DCTNINPFSSI  YSKARIQQ LN NQGT
Sbjct: 870  FLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI--YSKARIQQSLNQNQGT 927

Query: 247  IHTLLNKNKEFQSLIILLSSNCFRMGPFAGV-KYHNVIKKSIQNKKDPRISIRNSLGPLG 71
            IHTLLN+N  FQSLIIL SSNCFRMGPF  V KYHNVIK+SIQ  KDPRI I+NSLGP G
Sbjct: 928  IHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPFG 987

Query: 70   SAPPIANFFSFSHLLTHNQILV 5
            +A PI NF+SF HL+THNQILV
Sbjct: 988  TAFPIVNFYSFYHLITHNQILV 1009