BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00019841
         (2608 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP03154.1| unnamed protein product [Coffea canephora]            930   0.0  
ref|XP_011093738.1| PREDICTED: chloroplastic group IIA intron sp...   778   0.0  
ref|XP_009352661.1| PREDICTED: chloroplastic group IIA intron sp...   764   0.0  
ref|XP_008360480.1| PREDICTED: chloroplastic group IIA intron sp...   760   0.0  
ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron sp...   752   0.0  
ref|XP_002514120.1| conserved hypothetical protein [Ricinus comm...   742   0.0  
ref|XP_012846341.1| PREDICTED: chloroplastic group IIA intron sp...   740   0.0  
ref|XP_007203795.1| hypothetical protein PRUPE_ppa001111mg [Prun...   732   0.0  
ref|XP_008242355.1| PREDICTED: chloroplastic group IIA intron sp...   730   0.0  
ref|XP_007012816.1| CRS1 / YhbY domain-containing protein, putat...   724   0.0  
ref|XP_007012815.1| CRS1 / YhbY domain-containing protein, putat...   724   0.0  
ref|XP_007012812.1| CRS1 / YhbY domain-containing protein, putat...   724   0.0  
ref|XP_010242233.1| PREDICTED: chloroplastic group IIA intron sp...   723   0.0  
ref|XP_002309217.2| hypothetical protein POPTR_0006s15340g [Popu...   722   0.0  
ref|XP_011460155.1| PREDICTED: chloroplastic group IIA intron sp...   709   0.0  
ref|XP_009799178.1| PREDICTED: chloroplastic group IIA intron sp...   707   0.0  
gb|KHG14705.1| hypothetical protein F383_17214 [Gossypium arboreum]   706   0.0  
ref|XP_008450865.1| PREDICTED: chloroplastic group IIA intron sp...   705   0.0  
ref|XP_009602353.1| PREDICTED: chloroplastic group IIA intron sp...   702   0.0  
ref|XP_009602352.1| PREDICTED: chloroplastic group IIA intron sp...   702   0.0  

>emb|CDP03154.1| unnamed protein product [Coffea canephora]
          Length = 830

 Score =  930 bits (2404), Expect = 0.0
 Identities = 504/665 (75%), Positives = 535/665 (80%), Gaps = 7/665 (1%)
 Frame = -3

Query: 1976 DEQNGEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDE-EIGQNGAKK 1800
            +E   E   +D+E  V   NG   ++ S  +          + EKV L   E G+   KK
Sbjct: 100  EEAKFENFEEDEERNVRFSNGVVSQTASEKSSAVSQPMSSGLPEKVILPPWEHGKKPRKK 159

Query: 1799 DDTPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESES-----D 1635
                N + ++         + A ++ + L    ++ ++    S  ++     E      +
Sbjct: 160  SQFDNPVRNS---------RRASNSTESLNGLNDHAQNYATNSRVIQNCNNFEGKFDLGE 210

Query: 1634 QQCHEGKRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWK 1455
            Q   +GKRLRKSNTEVAEKVIPE ELKRLRNLALR VERIKVGAAGVTQALVDSIHEKWK
Sbjct: 211  QSGEKGKRLRKSNTEVAEKVIPEPELKRLRNLALRMVERIKVGAAGVTQALVDSIHEKWK 270

Query: 1454 LDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQT 1275
            LDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSY +QT
Sbjct: 271  LDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYARQT 330

Query: 1274 QDKTKEIESSGGQVNNFAQSIAT-CSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPR 1098
            QDKTKE ESSG QVNNFA+SI T CSAEPSTAKSYS+NLSV               LGPR
Sbjct: 331  QDKTKEFESSGVQVNNFARSIGTSCSAEPSTAKSYSNNLSVKELKDRSELNLLLDELGPR 390

Query: 1097 FKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFAL 918
            FKDWSGRE             PGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFAL
Sbjct: 391  FKDWSGREPVPVDADLLPDVVPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFAL 450

Query: 917  GRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIV 738
            GRNRQLQGLALAMVKLW K AIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIV
Sbjct: 451  GRNRQLQGLALAMVKLWEKCAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIV 510

Query: 737  FYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSET 558
            FYRGNDFLPSGVTQAL+EKE+E VLQQDEEEIARQRALALI SNVKVAE PLVAGTLSET
Sbjct: 511  FYRGNDFLPSGVTQALVEKERETVLQQDEEEIARQRALALIASNVKVAERPLVAGTLSET 570

Query: 557  KAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENF 378
            KAAT  W NQ  GEDLEKMMRDSAV +HAALVK LENKLAIAKGKITKAEKALLK+QENF
Sbjct: 571  KAATLRWNNQATGEDLEKMMRDSAVVKHAALVKSLENKLAIAKGKITKAEKALLKVQENF 630

Query: 377  EPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFV 198
            EPAEQPTDLETINDEERFL RKMGLSMKPYLFLGRRGIFDG IENMHLHWKYRELVKIFV
Sbjct: 631  EPAEQPTDLETINDEERFLLRKMGLSMKPYLFLGRRGIFDGTIENMHLHWKYRELVKIFV 690

Query: 197  QRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQA 18
            +RKSFPQVKHIAISLEAESGGILVSVDKT KGYVIIVYRGKNYLPPSAFRPKNLLTRRQA
Sbjct: 691  ERKSFPQVKHIAISLEAESGGILVSVDKTAKGYVIIVYRGKNYLPPSAFRPKNLLTRRQA 750

Query: 17   LARSI 3
            LARSI
Sbjct: 751  LARSI 755



 Score =  263 bits (671), Expect = 8e-67
 Identities = 138/216 (63%), Positives = 152/216 (70%), Gaps = 3/216 (1%)
 Frame = -3

Query: 2591 MATLQSPLXXXXXXXXXXXXXXXXXXXXXXXXLETRCLNRALRFRICCSAHSLELGNQQS 2412
            MAT QSPL                        LETRCLNRAL+F+ICCS HS+E+G QQS
Sbjct: 1    MATSQSPLNFLSPTPFPCPSSSSSESHFLIPLLETRCLNRALKFKICCSTHSIEIGTQQS 60

Query: 2411 NPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXXXXXXXXXXXXXXXXXXVGFSNG 2232
            + TRKKRKPRPSF+EQI+DKWSRKP+ILI K PW                    V FSNG
Sbjct: 61   SLTRKKRKPRPSFVEQIQDKWSRKPTILIEKLPWEEEEKEEAKFENFEEDEERNVRFSNG 120

Query: 2231 IVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRKKSQFGNQVRNSRQTSNSTENLN 2052
            +VSQTASEK SAV QP+SSGLPEKVILPPWEHG KPRKKSQF N VRNSR+ SNSTE+LN
Sbjct: 121  VVSQTASEKSSAVSQPMSSGLPEKVILPPWEHGKKPRKKSQFDNPVRNSRRASNSTESLN 180

Query: 2051 G---HPQNYAISSRVIQNSNNFEGKFDLDEQNGEKG 1953
            G   H QNYA +SRVIQN NNFEGKFDL EQ+GEKG
Sbjct: 181  GLNDHAQNYATNSRVIQNCNNFEGKFDLGEQSGEKG 216


>ref|XP_011093738.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 887

 Score =  778 bits (2009), Expect = 0.0
 Identities = 447/846 (52%), Positives = 551/846 (65%), Gaps = 16/846 (1%)
 Frame = -3

Query: 2492 ETRCLN--RALRFRICCSAHSLELGN---QQSNPTRKKRKPRPSFLEQIEDKWSRKPSIL 2328
            +TR L   R  + RI C   +++L N   Q++ P +KKRKPRPSFLEQ++ KWS +   L
Sbjct: 31   QTRSLQSFRPRKLRISCCQKTVQLENETKQKAYPVKKKRKPRPSFLEQVQSKWSIRTPPL 90

Query: 2327 IHKFPWXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILP 2148
               FPW                      FS  + S+  SEK S V +P  S    K IL 
Sbjct: 91   RENFPWQEEESGGTNQEFEAQRSV----FSRDVSSEEESEKSSCVSEPERSQRINKSILA 146

Query: 2147 PWEHGNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQ 1968
            PW HGN  +        V NS  + N  EN+  HP++                       
Sbjct: 147  PWVHGNGRKN-------VFNSEGSRNIQENV--HPKD----------------------- 174

Query: 1967 NGEKGVKD---DETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKD 1797
            +G  G+++   +E P+ ++          V G+  +  +K V E  + +EE+G+     D
Sbjct: 175  DGLHGIQEHWPNEDPLVSV----------VVGYEDL--VKEVTENGRSEEEVGEF----D 218

Query: 1796 DTPNELSHTGEFLFNEVVK--GAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCH 1623
            D P  LS   E L NE  +   A  +   + +  +  K   D ++ +RLPWE + D++  
Sbjct: 219  DIPIGLSEKNEILGNEESEDFAAMEDLSTISLEISSEKCSNDANDLMRLPWERKIDEEFV 278

Query: 1622 EGKRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEV 1443
            + ++ R  NTE+AE++IPE ELKRLRN++LR VER+KVGAAGVTQALVD+IHEKWK +EV
Sbjct: 279  KEEKSRNRNTELAERLIPEPELKRLRNVSLRMVERMKVGAAGVTQALVDAIHEKWKHEEV 338

Query: 1442 VKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKT 1263
            VKLKFEGP + NMR TH+ILESRTGGLVIWRSGS+VVLYRGM YKLDCV+SY+K  Q   
Sbjct: 339  VKLKFEGPPSKNMRRTHEILESRTGGLVIWRSGSSVVLYRGMTYKLDCVKSYSKHVQG-- 396

Query: 1262 KEIESSGGQVNNFAQSIATCSAEPSTAK------SYSSNLSVXXXXXXXXXXXXXXXLGP 1101
             +  +SG    +  +SI       +          Y ++LS                LGP
Sbjct: 397  -DAGASGSSQEDSPESIKVKRLNGAAESFGVYNSKYYNSLSQEEQMDLSELDLLLHELGP 455

Query: 1100 RFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFA 921
            RF DWSGRE             PG++ PFRLLP+G R  LRDKEMT+ RR+AR+LPPHFA
Sbjct: 456  RFIDWSGREPLPVDADLLPAVVPGFKSPFRLLPYGTRQALRDKEMTYLRRTARLLPPHFA 515

Query: 920  LGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYI 741
            LGRNR LQGLA+AMVKLW KSAIAKIAIKRGV NT NERMAEELK+LTGGTL+SRNKE+I
Sbjct: 516  LGRNRDLQGLAMAMVKLWEKSAIAKIAIKRGVPNTSNERMAEELKILTGGTLVSRNKEFI 575

Query: 740  VFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSE 561
            VFYRGNDFLP GV+ AL+E E+   LQQDEEE ARQRA  LI+   K ++ PLVAGTL+E
Sbjct: 576  VFYRGNDFLPPGVSSALIEAERSTALQQDEEEQARQRAAMLIDPKAKASKQPLVAGTLAE 635

Query: 560  TKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQEN 381
            T AATS W   PN  + EKMMRD+AVARHA++V  L+ KLAIAK KI KAE+AL K+ +N
Sbjct: 636  TIAATSRWGTHPNSAEKEKMMRDAAVARHASMVDSLQRKLAIAKSKIGKAERALQKVLQN 695

Query: 380  FEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIF 201
             EP   PTDLET+ DEERFLFR++GLSMKPYL LGRR +FDG IENMHLHWKYRELVKI 
Sbjct: 696  QEPESLPTDLETLTDEERFLFRRIGLSMKPYLLLGRREVFDGTIENMHLHWKYRELVKII 755

Query: 200  VQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQ 21
            V+RK+F QVKHIA+SLEAESGG+LVS+DKTTKGY IIVYRGKNY  P  FRP+NLLT+RQ
Sbjct: 756  VERKTFSQVKHIAVSLEAESGGVLVSMDKTTKGYAIIVYRGKNYQRPLTFRPRNLLTKRQ 815

Query: 20   ALARSI 3
            ALARSI
Sbjct: 816  ALARSI 821


>ref|XP_009352661.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Pyrus x bretschneideri]
            gi|694323163|ref|XP_009352662.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Pyrus x bretschneideri] gi|694323165|ref|XP_009352663.1|
            PREDICTED: chloroplastic group IIA intron splicing
            facilitator CRS1, chloroplastic [Pyrus x bretschneideri]
          Length = 985

 Score =  764 bits (1972), Expect = 0.0
 Identities = 435/868 (50%), Positives = 558/868 (64%), Gaps = 44/868 (5%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSN------PTRKKRKPRPSFLEQIEDKWSRKPSILIHKFP 2313
            R+LRFR+ C    ++   Q         PT+KKRKP+PSF EQI+DKWS K +     FP
Sbjct: 45   RSLRFRVSCKTGQIDTQEQPQRTKVAFEPTKKKRKPKPSFFEQIQDKWSMKVNSPRENFP 104

Query: 2312 WXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHG 2133
            W                       S+G+   +ASE    V Q VS  LP +++  PW HG
Sbjct: 105  WQKQNVVLEEEEEEEEEEEEEGQKSSGV---SASEP---VKQTVSFSLPNRIVYAPWSHG 158

Query: 2132 NKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAI--SSRVIQNSNNFEGKFDLDEQNGE 1959
            +KP K  Q   +   S+ +    +NL G  ++  I  +S  ++     E +FD  ++ G 
Sbjct: 159  SKPIKP-QVDYESATSQHSVAQGKNLGGFVRHSEIDTTSGGVEKEKRLEQRFDSTKKLGR 217

Query: 1958 KGVKDDETPVGNLNGTNERSE------SNVAGFSVVQDI---------------KRVEEK 1842
            + V  +    G  NG +++ E      SN   F+    +               +R + K
Sbjct: 218  ESVGANG---GISNGVSKKEEKMISNGSNGVSFNETLSVDGGNDEKIEKEKSFKQRFDGK 274

Query: 1841 VKLDEE-IGQNG------AKKDDTPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDL 1683
             KL+ + IG+NG      +KK+D        G   F+E + G    N+ +   +N+V   
Sbjct: 275  RKLESKSIGENGGTSIGVSKKEDKMISKGLNG-ISFDETISGDGAKNEKV---ENFVHIH 330

Query: 1682 GDTSESVRLPWESESDQQCHEGKRLRK--SNTEVAEKVIPELELKRLRNLALRTVERIKV 1509
              + +S+RLPWE ES+    EG + RK  SNT++ E+++P+ ELKRLRN++LR +ERIKV
Sbjct: 331  SGSCDSIRLPWERESELGSEEGDKARKRRSNTDLVERMLPDHELKRLRNVSLRMLERIKV 390

Query: 1508 GAAGVTQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVL 1329
            G +G+TQALVD+IHEKWK+DEVVKLKFE P ++NM+ TH+ILES+TGGLVIWRSGS+VVL
Sbjct: 391  GVSGITQALVDTIHEKWKVDEVVKLKFEEPFSLNMKRTHEILESKTGGLVIWRSGSSVVL 450

Query: 1328 YRGMGYKLDCVQSYTKQTQDKTKEIESSGGQVNNFAQSIATCSAEPST------AKSYSS 1167
            YRGM Y + CVQSY KQ+Q  +  +  +     +    +       +T      +  Y  
Sbjct: 451  YRGMTYNIPCVQSYAKQSQTNSHMLHHTEDATRDGMHKVGMKDVSRTTDFPSLESAEYLK 510

Query: 1166 NLSVXXXXXXXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRH 987
            +LS                LGPRFKDW GRE             PGY+ PFRLLP+G+R 
Sbjct: 511  DLSQRELMDLSVLNHLLDELGPRFKDWIGREPLPVDADLLPPVIPGYKTPFRLLPYGVRP 570

Query: 986  GLRDKEMTFFRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNE 807
            GLR+K+MT FRR AR +PPHFALGRNR+LQGLA AMVKLW KSAIAKIAIKRGVQNTCNE
Sbjct: 571  GLRNKDMTKFRRLARTVPPHFALGRNRELQGLANAMVKLWEKSAIAKIAIKRGVQNTCNE 630

Query: 806  RMAEELKVLTGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRA 627
            RMAEELK LTGGTLLSRNK++IVFYRGND+LPS VT  L E+ K   LQQDEEE ARQ A
Sbjct: 631  RMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPSVVTGVLKERRKLRDLQQDEEEQARQMA 690

Query: 626  LALIESNVKVAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLEN 447
               +ES  + ++  LVAGTL+ET AAT+ W NQ   + +EKM RDS +ARHA+LV+ LE 
Sbjct: 691  SDFVESKPEASKGQLVAGTLAETLAATTRWRNQLTIDKVEKMTRDSTLARHASLVRHLEK 750

Query: 446  KLAIAKGKITKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRG 267
            KLA+AKGK+ KAEKAL ++QE+ EP++ P DLET+ DE+RFLFRK+GLSMKP+L LGRRG
Sbjct: 751  KLALAKGKLRKAEKALARVQESLEPSDLPDDLETLTDEDRFLFRKIGLSMKPFLLLGRRG 810

Query: 266  IFDGIIENMHLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIV 87
            ++ G IENMHLHWK+RELVKI V+ KSF QVKH+AISLEAESGG+LVS+DKTTKGY +IV
Sbjct: 811  VYSGTIENMHLHWKHRELVKIIVRGKSFEQVKHVAISLEAESGGVLVSLDKTTKGYAVIV 870

Query: 86   YRGKNYLPPSAFRPKNLLTRRQALARSI 3
            YRGKNY  P   RP+NLLTRRQALARSI
Sbjct: 871  YRGKNYQCPLPLRPRNLLTRRQALARSI 898


>ref|XP_008360480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
            gi|658062676|ref|XP_008367245.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
            gi|658062678|ref|XP_008367246.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
            gi|658062680|ref|XP_008367247.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 986

 Score =  760 bits (1962), Expect = 0.0
 Identities = 432/865 (49%), Positives = 550/865 (63%), Gaps = 41/865 (4%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSN------PTRKKRKPRPSFLEQIEDKWSRKPSILIHKFP 2313
            R LRFR+ C    ++   Q         PT+KKRKP+PSF EQI+DKWS K +     FP
Sbjct: 45   RTLRFRVSCKTGQIDTQEQPQRIKVAFEPTKKKRKPKPSFFEQIQDKWSMKVNSPRENFP 104

Query: 2312 WXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHG 2133
            W                     G  +  VS  ASE    V Q VS  LP +V+  PW HG
Sbjct: 105  WQKQNVELEEEEEEEEEEEEEEGQKSSGVS--ASEP---VKQTVSVSLPNRVVYAPWSHG 159

Query: 2132 NKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAI--SSRVIQNSNNFEGKFDLDEQNGE 1959
            +KP K  Q   +   S+ +    +NL G  ++  I  +S  ++     E +FD + + G 
Sbjct: 160  SKPIKP-QVDYEPATSQHSVXQGKNLGGFVRHSEIDTTSGSVEKEKRLEQQFDSNRKLGR 218

Query: 1958 KGV-----------KDDETPVG------------NLNGTNERSESNVAGFSVVQDIKRVE 1848
            + V           K++E  +             +++G N+        F    D KR  
Sbjct: 219  ESVGANGGISNGISKEEEKMISKGSNGISFNETLSVDGGNDEKIEKEKSFEQRFDSKRKL 278

Query: 1847 EKVKLDEEIGQN--GAKKDDTPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDT 1674
            E   + E  G +   +KK+D        G + F+E + G   NN+ +   +N+V     +
Sbjct: 279  ESKSVGENDGTSIGFSKKEDKMISKGLNGVY-FDETISGDGANNERV---ENFVHTHSGS 334

Query: 1673 SESVRLPWESESDQQCHEGKRLRK--SNTEVAEKVIPELELKRLRNLALRTVERIKVGAA 1500
             +S+RLPWE ES+    EG + RK  SNT++AE+++P+ ELKRLRN++LR +ERIKVG +
Sbjct: 335  CDSIRLPWERESELGSEEGDKARKRRSNTDLAEQMLPDHELKRLRNVSLRMLERIKVGVS 394

Query: 1499 GVTQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRG 1320
            G+TQALVD+IHEKWK+DEVVKLKFE P ++NM+ TH+ILES+TGGL+IWRSGS+VVLYRG
Sbjct: 395  GITQALVDTIHEKWKVDEVVKLKFEEPFSLNMKRTHEILESKTGGLIIWRSGSSVVLYRG 454

Query: 1319 MGYKLDCVQSYTKQTQDKTKEIESSGGQVNNFAQSIATCSAEPST------AKSYSSNLS 1158
            M Y + CVQSY KQ+Q  +  +  +     +    +       +T      +  Y  +LS
Sbjct: 455  MTYNIPCVQSYAKQSQSNSLMLHHTEDATRDGMHKVGMKDVSRTTDFPSLESAEYLKDLS 514

Query: 1157 VXXXXXXXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLR 978
                            LGPRFKDW GRE             PGY+ PFRLLP+G+R GLR
Sbjct: 515  QRELMDLSVLNHLLDELGPRFKDWIGREPLPVDADLLPPMIPGYKTPFRLLPYGVRPGLR 574

Query: 977  DKEMTFFRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMA 798
            +K+MT FRR AR +PPHFALGRNR+LQGLA AMVKLW KSAIAKIAIKRGVQNTCNERMA
Sbjct: 575  NKDMTKFRRLARTVPPHFALGRNRELQGLANAMVKLWEKSAIAKIAIKRGVQNTCNERMA 634

Query: 797  EELKVLTGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALAL 618
            EELK LTGGTLLSRNK++IVFYRGND+LP  VT  L E+ K   LQQDEEE ARQ A   
Sbjct: 635  EELKRLTGGTLLSRNKDFIVFYRGNDYLPPVVTGVLKERRKLRDLQQDEEEQARQMASDF 694

Query: 617  IESNVKVAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLA 438
            +ES  + ++  LVAGTL+ET AAT+ W NQ   + +EKM RDS +ARHA+LV+ LE KLA
Sbjct: 695  VESKPEASKGQLVAGTLAETLAATTRWRNQLTIDKVEKMTRDSTLARHASLVRHLEKKLA 754

Query: 437  IAKGKITKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFD 258
            +AKGK+ KAEKAL ++QE+ EP++ P DLET+ DE+RFLFRK+GL MKP+L LGRR ++ 
Sbjct: 755  LAKGKLRKAEKALARVQESLEPSDLPDDLETLTDEDRFLFRKIGLCMKPFLLLGRREVYS 814

Query: 257  GIIENMHLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRG 78
            G IENMHLHWK+RELVKI V+ KSF QVKHIAISLEAESGG+LVS+DKTTKGY +IVYRG
Sbjct: 815  GTIENMHLHWKHRELVKIIVRGKSFEQVKHIAISLEAESGGVLVSLDKTTKGYAVIVYRG 874

Query: 77   KNYLPPSAFRPKNLLTRRQALARSI 3
            KNY  P   RP+NLLTRRQALARSI
Sbjct: 875  KNYQCPLPLRPRNLLTRRQALARSI 899


>ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
          Length = 884

 Score =  752 bits (1942), Expect = 0.0
 Identities = 429/834 (51%), Positives = 532/834 (63%), Gaps = 10/834 (1%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSN----PTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWX 2307
            R L+F   CS HS+++  QQ       T+ KRKPRPSF EQI DKWS K +    KFPW 
Sbjct: 27   RTLKFNCSCSYHSIQVDTQQVKVPLKTTKAKRKPRPSFFEQIRDKWSLKINSPREKFPWQ 86

Query: 2306 XXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNK 2127
                                  S+G+V   +    S+V  PVSS    + +  P  H +K
Sbjct: 87   EQAEETQN--------------SSGVVVPDSEVIDSSVGSPVSSASESRFVSVPCIHESK 132

Query: 2126 PRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQNGEKGVK 1947
            PR   +  ++   S+ +     N+ G   + A    V + S +F+ + D D +   +GV+
Sbjct: 133  PRNP-RLVSEPEISQNSCEQGVNVVGFGSHRA---SVDEWSKSFQKEVDSDGKFEGEGVE 188

Query: 1946 DDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPNELSHTG 1767
             DE P+G L GT                        K + E+G      ++ P       
Sbjct: 189  VDEIPIGVL-GTE-----------------------KTEIEMGDANVSLNEKP------- 217

Query: 1766 EFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCHEGKRLRKSNTEV 1587
                          ++  G F+ +       S  + LPW+     Q  E     + NT +
Sbjct: 218  -----------PGGDEDFGNFEGF----SGNSSLIELPWKRREGLQPVERDGWGRRNTRM 262

Query: 1586 AEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFEGPTAMN 1407
            AE+++PE EL+RL+N+ALR +ERIKVGAAGVTQ+LVD+IHEKW+ DEVVKLKFEGP++ N
Sbjct: 263  AERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCN 322

Query: 1406 MRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKTKEIESSGGQVNN 1227
            M+ TH+ILE+RTGGLVIWR+GS+VVLYRGM YKL CVQSY KQ +D     E S    N 
Sbjct: 323  MKRTHEILETRTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDNVNISEYSQDAANV 382

Query: 1226 FAQSIA------TCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRFKDWSGREXXX 1065
              Q I       T  +  S +  Y  +LS                LGPRFKDWSGRE   
Sbjct: 383  IIQDIGVKDIVKTTESVISDSARYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLP 442

Query: 1064 XXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQLQGLAL 885
                        Y+PPFRLLP+G+RH LR++EMTF RR AR +PPHFALGR+R+LQGLA+
Sbjct: 443  VDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAM 502

Query: 884  AMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGNDFLPSG 705
            AMVKLW +SAIAKIAIKRGVQNTCN+RMAEELK LTGGTL+SRNK+YIVFYRGNDFLP  
Sbjct: 503  AMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPH 562

Query: 704  VTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETKAATSHWANQP 525
            V +AL E+ K   LQQDEEE AR RA ALI+S  + A+ PLVAGTL+ET AATS W ++P
Sbjct: 563  VMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEP 622

Query: 524  NGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQPTDLET 345
            + ED+ KM+RDSA+ARHA+LV+++  KLA AK K+ K EKAL K+QE+ EPAE P DLET
Sbjct: 623  SEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLET 682

Query: 344  INDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSFPQVKHI 165
            ++DEERFLFRK+GLSMKP+L LG RGIFDG +ENMHLHWKYRELVKI V+ K+F QVKHI
Sbjct: 683  LSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHI 742

Query: 164  AISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
            AISLEAESGG+LVSVD+T KGY IIVYRGKNY  P A RPKNLLT+RQALARSI
Sbjct: 743  AISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSI 796


>ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
            gi|223546576|gb|EEF48074.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 930

 Score =  742 bits (1916), Expect = 0.0
 Identities = 432/836 (51%), Positives = 532/836 (63%), Gaps = 12/836 (1%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXXX 2295
            +A  F   CS +S  +   Q + T+ KRKPRPSF EQI DKWS K       FPW     
Sbjct: 58   KAFNFETNCS-YSRSI---QVSATKTKRKPRPSFFEQIRDKWSLKVPSTRDTFPWQEPEQ 113

Query: 2294 XXXXXXXXXXXXXXXVGFSNGIVSQTASE----KFSAVCQPVSSGLPEKVILPPWEHGNK 2127
                                  V+ + +E      S     VS  LP  +   PW HG +
Sbjct: 114  QQEHQGQGKNDEEEIERCEISGVTLSKAEIDANPSSIDDDSVSVSLPNHLTTAPWVHGTR 173

Query: 2126 PRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQNGEKGVK 1947
            P+K               N    +    +N  +   V  N    +    L   N E+ VK
Sbjct: 174  PKKNHFSSRPKIGENVVQNDVHTVVDIVEN--LEKEVTCNDKFKKEDNILHVDNAERLVK 231

Query: 1946 DDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPNELSHTG 1767
            +      N +   + ++  V GFSV         ++K D EI +  AK   +P+ +    
Sbjct: 232  EV-----NYDKKFKEAKVQVGGFSV---------ELKRDNEIAR--AKYSKSPSYI---- 271

Query: 1766 EFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCHEGK-RLRKSNTE 1590
                NE   GA   N G GV  +Y     D S S+ LPWE E   +  EG  R ++SNTE
Sbjct: 272  ----NEKPFGA---NGGYGVQVSY----DDNSSSIELPWEKERVMESVEGYLRGKRSNTE 320

Query: 1589 VAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFEGPTAM 1410
            +AE+++PE ELKRLRN+ALR  ERIKVGAAG+ Q LVD++HEKW+LDEVVKLKFE P + 
Sbjct: 321  LAERMLPEHELKRLRNVALRMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSF 380

Query: 1409 NMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKTKEIESSGGQVN 1230
            NMR TH+ILE+RTGGLVIWRSGS+VVLYRG+ YKL CV+S++KQ  +  KEI +   +V 
Sbjct: 381  NMRRTHEILENRTGGLVIWRSGSSVVLYRGISYKLHCVRSFSKQ-DEAGKEILAHPEEVT 439

Query: 1229 NFA-------QSIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRFKDWSGREX 1071
            + A         I T  +       Y  +LS                LGPRF+DW GRE 
Sbjct: 440  SNATLNIGVKHFIGTTESYIPDRAKYLKDLSREELTDFTELNQFLDELGPRFEDWCGREP 499

Query: 1070 XXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQLQGL 891
                        PGY+PPFRLLP+G+RH L DKEMT FRR AR +PPHFALGRNRQLQGL
Sbjct: 500  LPVDADLLLAVDPGYKPPFRLLPYGVRHCLTDKEMTIFRRLARTVPPHFALGRNRQLQGL 559

Query: 890  ALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGNDFLP 711
            A A+VKLW +SAI KIAIKRGVQNT NERMAEELKVLTGG LLSRNKEYIVFYRGNDFLP
Sbjct: 560  AKAIVKLWERSAIVKIAIKRGVQNTRNERMAEELKVLTGGILLSRNKEYIVFYRGNDFLP 619

Query: 710  SGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETKAATSHWAN 531
              + + L E++K   L+QDEEE ARQ ALA +ES+ K ++ PLVAGTL+ET AATSHW +
Sbjct: 620  PAIVKTLKERKKLTYLKQDEEEQARQMALASVESSAKTSKVPLVAGTLAETVAATSHWRD 679

Query: 530  QPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQPTDL 351
            Q    D+++M+R++ +A+ A+LVK LENKLA+AKGK+ KAEKAL K+ E+ +P+  PTDL
Sbjct: 680  QRGSPDIDEMLREAVLAKRASLVKHLENKLALAKGKLRKAEKALAKVHEHLDPSGLPTDL 739

Query: 350  ETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSFPQVK 171
            ETI+DEERFLFRK+GLSMKPYLFLG+RG++DG IENMHLHWKYRELVK+ V+ KSF QVK
Sbjct: 740  ETISDEERFLFRKIGLSMKPYLFLGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVK 799

Query: 170  HIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
            HIAISLEAESGG+LVS+++TTKGY IIVYRGKNYL P   RPKNLLT+RQAL RSI
Sbjct: 800  HIAISLEAESGGVLVSIERTTKGYAIIVYRGKNYLHPEVMRPKNLLTKRQALVRSI 855


>ref|XP_012846341.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Erythranthe guttatus]
            gi|604318307|gb|EYU29891.1| hypothetical protein
            MIMGU_mgv1a001353mg [Erythranthe guttata]
          Length = 835

 Score =  740 bits (1910), Expect = 0.0
 Identities = 436/839 (51%), Positives = 528/839 (62%), Gaps = 10/839 (1%)
 Frame = -3

Query: 2489 TRCLNRALRFRICCSAHSLELGNQQSNP---TRKKRKPRPSFLEQIEDKWSRKPSILIHK 2319
            TR LN   R  I C   +++L N+  +     +KKRKPRPSF+EQI++KWS K   L   
Sbjct: 33   TRSLNS--RKIINCCQQTVQLDNETLHTITLVKKKRKPRPSFVEQIQNKWSLKTPSLREN 90

Query: 2318 FPWXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPV--SSGLPEKVILPP 2145
            FPW                      FS  + S    E   +V + V  +     K IL P
Sbjct: 91   FPWQEEQEEFRAQTTP---------FSQNVSSAKEIEVSVSVSERVVVTHVKKPKSILAP 141

Query: 2144 WEHGNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQN 1965
            W HGN+ R+      ++  S  ++ + EN+    +      RV+       GK D     
Sbjct: 142  WVHGNESRR------ELPVSEGSTKNQENVRTEKEFLVSPVRVLAEY----GKSD----- 186

Query: 1964 GEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPN 1785
             EK ++ DETP+                        R+ EK      + +N A  D T  
Sbjct: 187  -EKFIEFDETPI------------------------RLTEK----NAVVENSATTDRTAT 217

Query: 1784 ELSHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCHEGKRLR 1605
             +  +              N DGL                 RLPWE ++D++  +  +LR
Sbjct: 218  RIKPSV-------------NGDGLN----------------RLPWERKNDEEFVKKDKLR 248

Query: 1604 KSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFE 1425
            K++T +AE ++PE ELKRLRN++LR VERIKVGAAGVTQALVDSIH+KWK +EVVKLKF 
Sbjct: 249  KTSTSLAEGLVPEHELKRLRNVSLRMVERIKVGAAGVTQALVDSIHDKWKNEEVVKLKFL 308

Query: 1424 GPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKTKEIESS 1245
            GP + NM+ TH+ILE RTGGLVIWRSGS++VLYRGM Y LDCV+SYTK  +D  +E+ESS
Sbjct: 309  GPPSKNMKRTHEILERRTGGLVIWRSGSSLVLYRGMTYNLDCVKSYTKHVEDDAEELESS 368

Query: 1244 GGQVNNFAQSIATCSAEPSTAKS-YSSNLSVXXXXXXXXXXXXXXXLGPRFKDWSGREXX 1068
                    +          T  S Y +NLS                LGPRF DWSGR+  
Sbjct: 369  KEDSPQRIKVKKRPGESSGTFDSDYFNNLSEEEQMDLSEMNLLLDELGPRFIDWSGRDPL 428

Query: 1067 XXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQLQGLA 888
                       PGY+ P+RLLPHGIR  LRDK+MT+ RR+AR +PPHF LGRNR+LQGLA
Sbjct: 429  PVDADLLPPVVPGYKTPYRLLPHGIRQPLRDKQMTYIRRTARTMPPHFVLGRNRELQGLA 488

Query: 887  LAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGNDFLPS 708
            LAMVKLW KS++AKIAIKRGV NT NERMAEELK LTGGTL+SRNKE+IVFYRGNDFLP 
Sbjct: 489  LAMVKLWEKSSLAKIAIKRGVLNTSNERMAEELKRLTGGTLVSRNKEFIVFYRGNDFLPP 548

Query: 707  GVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWP----LVAGTLSETKAATSH 540
            G++ AL EKE    LQQD EE ARQRA +LIE  +K         LVAGTL+ET AAT+ 
Sbjct: 549  GISSALTEKENSITLQQDHEEKARQRAASLIEPKLKALSKKHKPLLVAGTLAETIAATTR 608

Query: 539  WANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQP 360
            W NQ NG D+EKMMR++AV RHA LV  L+ KLA+AK K+ KAEK+L K+ EN EP + P
Sbjct: 609  WGNQSNGADMEKMMRENAVDRHAFLVNSLQKKLALAKEKMRKAEKSLQKVLENQEPGDLP 668

Query: 359  TDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSFP 180
            TDLET+ DEERFLFR++GLSMKPYL LGRR IFDG IENMHLHWKYRELVKI VQRK+FP
Sbjct: 669  TDLETLTDEERFLFRRIGLSMKPYLLLGRREIFDGTIENMHLHWKYRELVKIMVQRKTFP 728

Query: 179  QVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
            QVKHIA+SLEAESGG+LVSVDKT KGYVIIVYRGKNY  P AFRP+NLLT+RQALARSI
Sbjct: 729  QVKHIAVSLEAESGGVLVSVDKTFKGYVIIVYRGKNYQSPLAFRPRNLLTKRQALARSI 787


>ref|XP_007203795.1| hypothetical protein PRUPE_ppa001111mg [Prunus persica]
            gi|462399326|gb|EMJ04994.1| hypothetical protein
            PRUPE_ppa001111mg [Prunus persica]
          Length = 906

 Score =  732 bits (1889), Expect = 0.0
 Identities = 415/840 (49%), Positives = 526/840 (62%), Gaps = 16/840 (1%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSN------PTRKKRKPRPSFLEQIEDKWSRKPSILIHKFP 2313
            RALRFR+ C    ++   Q          TRKKRKP+PSF EQI+DKWS K +    KFP
Sbjct: 42   RALRFRVSCKTVQVDTQEQPQRIKVAFEATRKKRKPKPSFFEQIQDKWSMKVNSPRDKFP 101

Query: 2312 WXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHG 2133
            W                             +   E+   V Q VS  LP +++  PW HG
Sbjct: 102  WQKQNELVQEEKEEV---------------EEEDEEEEPVNQKVSFSLPNRIVYAPWAHG 146

Query: 2132 NKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAI--SSRVIQNSNNFEGKFDLDEQNGE 1959
            +K R   Q  ++   S+ +    +NL+G   +  I  +S  ++N  +FE +FD       
Sbjct: 147  SK-RITPQVDSEPETSQHSGAQGKNLDGFAGHSEIDTTSGAVKNEKSFERRFDS------ 199

Query: 1958 KGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPNEL 1779
                         N   ER      G   +   K+ E+ +      G NG          
Sbjct: 200  -------------NRKLERERVGEIGIISIGVSKKEEKMISK----GLNGIS-------- 234

Query: 1778 SHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCHEGKRLRK- 1602
                    NE + G   N++ +   +N+V      S S+RLPW+ ES+    EG + RK 
Sbjct: 235  -------LNETLSGDGENDEKV---ENFVYS---GSGSIRLPWKRESELSSEEGDKTRKR 281

Query: 1601 -SNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFE 1425
             SNTE+AE+++P+ EL+RLRN++LR +ERIKVG  G+TQALV++IHEKWK+DEVVKLKFE
Sbjct: 282  RSNTELAERMLPDHELRRLRNVSLRMLERIKVGVTGITQALVNTIHEKWKIDEVVKLKFE 341

Query: 1424 GPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKTKEIESS 1245
             P ++NM+ TH+ILES+TGGLVIWRSGS+VVLYRGM Y L CVQ+Y K +Q  +  ++ S
Sbjct: 342  EPFSLNMKRTHEILESKTGGLVIWRSGSSVVLYRGMTYNLPCVQTYAKHSQTNSHMLQHS 401

Query: 1244 GGQVNNFAQSIATCSAEPST------AKSYSSNLSVXXXXXXXXXXXXXXXLGPRFKDWS 1083
                ++   ++       +T      +  Y  +LS                LGPRFKDW 
Sbjct: 402  ENATSDSMHNVGVKDVSRTTDFPSLESAEYLKDLSQRELMALNDLNHLLDELGPRFKDWI 461

Query: 1082 GREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQ 903
            GRE              GY+ PFRLLP+G R  LRDK+MT +RR AR +PPHFALG NR+
Sbjct: 462  GREPLPVDADLLPSVVRGYKTPFRLLPYGFRPCLRDKDMTKYRRLARTVPPHFALGMNRE 521

Query: 902  LQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGN 723
            LQGLA AM+KLW KSAIAKIAIKRGVQNTCNERMAEELK LTGGTLLSRNK++IVFYRGN
Sbjct: 522  LQGLANAMMKLWEKSAIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNKDFIVFYRGN 581

Query: 722  DFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETKAATS 543
            D+LPS VT  L E+ K   LQQDEEE ARQ A   + SN + ++   VAGTL+ET AAT+
Sbjct: 582  DYLPSVVTGVLEERRKLRDLQQDEEEQARQMASDYVVSNSEASKGQFVAGTLAETMAATT 641

Query: 542  HWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQ 363
            HW NQ   + +EKM RDS  ARHA+LV+ LE KLA+ KGK+ KAEKAL ++QE+ EP++ 
Sbjct: 642  HWRNQLTIDKVEKMRRDSTFARHASLVRHLEKKLALGKGKLRKAEKALARVQESLEPSDL 701

Query: 362  PTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSF 183
            P DLET+ DE+RFLFRK+GLSMKP+L LGRR ++ G IENMHLHWK++ELVKI V+ KSF
Sbjct: 702  PDDLETLTDEDRFLFRKIGLSMKPFLLLGRREVYSGTIENMHLHWKHKELVKIIVRGKSF 761

Query: 182  PQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
             QVKHIAISLEAESGG+LVS+DKTTKGY II+YRGKNY  P   RP+NLLTRRQALARS+
Sbjct: 762  EQVKHIAISLEAESGGVLVSLDKTTKGYAIILYRGKNYQCPLPLRPRNLLTRRQALARSV 821


>ref|XP_008242355.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Prunus mume]
            gi|645274471|ref|XP_008242356.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Prunus mume]
          Length = 930

 Score =  730 bits (1885), Expect = 0.0
 Identities = 420/849 (49%), Positives = 527/849 (62%), Gaps = 25/849 (2%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSN------PTRKKRKPRPSFLEQIEDKWSRKPSILIHKFP 2313
            RALRFR+ C    ++   Q          TRKKRKP+PSF  QI+DKWS K +    KFP
Sbjct: 42   RALRFRVSCKTVQVDTQEQPQRIKVAFEATRKKRKPKPSFFVQIQDKWSMKVNSPRDKFP 101

Query: 2312 WXXXXXXXXXXXXXXXXXXXXVG---FSNGIVSQTASEKF------SAVCQPVSSGLPEK 2160
            W                         F   I  Q   +K         V Q VS  LP +
Sbjct: 102  WQKQNELVQEEKEEVEEDDEEEEEEVFEPKISKQEEGQKCYGERVAEPVNQKVSFSLPNR 161

Query: 2159 VILPPWEHGNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAI--SSRVIQNSNNFEGK 1986
            +I  PW HG+K R   Q  ++   S+ +    +NL+G   +  I  +S  ++   +FE +
Sbjct: 162  IIYAPWAHGSK-RITPQVDSEPETSQHSGAQGKNLDGFAGHSEIDTTSGAVKKEKSFERR 220

Query: 1985 FDLDEQNGEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGA 1806
            FD                    N   ER  +   G   +   K+ E+ +      G NG 
Sbjct: 221  FDS-------------------NRKLERERAGEVGIISIGVSKKEEKMISK----GLNGV 257

Query: 1805 KKDDTPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQC 1626
              D+T +      E + N V  G                     S S+RLPW+ ES+   
Sbjct: 258  SLDETLSGDGENDEKVENFVYSG---------------------SGSIRLPWKRESELSS 296

Query: 1625 HEGKRLRK--SNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKL 1452
             EG + RK  SNTE+AE+++P+ EL+RLRN++LR +ERIKVG  G+TQALV++IHEKWK+
Sbjct: 297  EEGDKTRKRRSNTELAERMLPDHELRRLRNVSLRMLERIKVGVTGITQALVNTIHEKWKI 356

Query: 1451 DEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQ 1272
            DEVVKLKFE P ++NM+ TH+ILES+TGGLVIWRSGS+VVLYRGM Y L CVQ+Y KQ+Q
Sbjct: 357  DEVVKLKFEEPFSLNMKRTHEILESKTGGLVIWRSGSSVVLYRGMTYNLPCVQTYAKQSQ 416

Query: 1271 DKTKEIESSGGQVNNFAQSIATCSAEPST------AKSYSSNLSVXXXXXXXXXXXXXXX 1110
              +  ++ S    ++   ++       +T      +  Y  +LS                
Sbjct: 417  TNSHMMQHSENATSDSMHNVGVKDVSRTTDFPSLESAEYLKDLSQQELMALNDLNHLLDE 476

Query: 1109 LGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPP 930
            LGPRFKDW GRE             PGY+ PFRLLP+G R  LRDK+MT +RR AR +PP
Sbjct: 477  LGPRFKDWIGREPLPVDADLLPSVVPGYKTPFRLLPYGFRPCLRDKDMTKYRRLARTVPP 536

Query: 929  HFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNK 750
            HFALGRNR+LQGLA AM+KLW KSAIAKIAIKRGVQNTCNERMAEELK LTGGTLLSRNK
Sbjct: 537  HFALGRNRELQGLANAMMKLWEKSAIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNK 596

Query: 749  EYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGT 570
            ++IVFYRGND+LPS VT  L E+ K   LQQDEEE ARQ A   + SN + ++   VAGT
Sbjct: 597  DFIVFYRGNDYLPSVVTGVLEERRKLRDLQQDEEEQARQMAADYVVSNSEASKRQFVAGT 656

Query: 569  LSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKL 390
            L+ET AAT+HW NQ   + +EKM RDS  AR A+LV+ LE KLA+AKGK+ KAEKAL ++
Sbjct: 657  LAETMAATTHWRNQLTIDRVEKMRRDSTFARRASLVRHLEKKLALAKGKLRKAEKALARV 716

Query: 389  QENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELV 210
            QE+ EP++ P DLET+ DE+RFLFRK+GLSMKP+L LGRR ++ G IENMHLHWK++ELV
Sbjct: 717  QESLEPSDLPDDLETLTDEDRFLFRKIGLSMKPFLLLGRREVYSGTIENMHLHWKHKELV 776

Query: 209  KIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLT 30
            KI V+ KSF QVKHIAISLEAESGG+LVS+DKTTKGY II+YRGKNY  P   RP+NLLT
Sbjct: 777  KIIVRGKSFEQVKHIAISLEAESGGVLVSLDKTTKGYAIILYRGKNYQCPLPLRPRNLLT 836

Query: 29   RRQALARSI 3
            RRQALARS+
Sbjct: 837  RRQALARSV 845


>ref|XP_007012816.1| CRS1 / YhbY domain-containing protein, putative isoform 5 [Theobroma
            cacao] gi|590575903|ref|XP_007012817.1| CRS1 / YhbY
            domain-containing protein, putative isoform 5 [Theobroma
            cacao] gi|508783179|gb|EOY30435.1| CRS1 / YhbY
            domain-containing protein, putative isoform 5 [Theobroma
            cacao] gi|508783180|gb|EOY30436.1| CRS1 / YhbY
            domain-containing protein, putative isoform 5 [Theobroma
            cacao]
          Length = 822

 Score =  724 bits (1868), Expect = 0.0
 Identities = 425/844 (50%), Positives = 538/844 (63%), Gaps = 14/844 (1%)
 Frame = -3

Query: 2492 ETRCLN---RALRFR-ICCSAHSLELGNQQSNPTRKKRKPRPSFLEQIEDKWSRKPSILI 2325
            +T C N   RAL+F+  CCS  ++++G + +    +KRKP+PSFL+QI+DKWS KP I  
Sbjct: 28   QTHCPNNSFRALKFKPSCCSHQTIKVGVEIT----RKRKPKPSFLDQIKDKWSLKPIIST 83

Query: 2324 H-KFPWXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAV--CQPVSSGLPEKVI 2154
              KFPW                         G +S++  ++   V    PVSS  P +VI
Sbjct: 84   REKFPWQEKEEFEEEEVERKQSF-------GGAISESERDEDPQVEGSDPVSSSFPSRVI 136

Query: 2153 LPPWEHGNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLD 1974
              PW HG      S+F     +                        +   +NFE K + D
Sbjct: 137  SAPWSHG------SEFNEPHFD-----------------------FVPEISNFESKIE-D 166

Query: 1973 EQNGEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDD 1794
                EK +   E P GN        ++ V G         +++   L+EE+  N  +K  
Sbjct: 167  SFASEKTI---EFPGGN--------KAEVVG-------GLIDKSESLNEEVNIN-KQKIG 207

Query: 1793 TPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNY-VKDLGDTSESVRLPWESESDQQCHEG 1617
             P            + V   E  ND +   +N+ V +  D   SV      E D     G
Sbjct: 208  LP----------VGKEVAAVEGLNDVVSSRENFEVSNSDDEGGSV------EGDS----G 247

Query: 1616 KRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVK 1437
            +  ++SNTE+ +++IPE E +RLRN+ALR VER KVG AG+TQALV+ IHE+WK+DEVVK
Sbjct: 248  RSKKRSNTEMVDRMIPEHESQRLRNVALRMVERTKVGVAGITQALVEYIHERWKMDEVVK 307

Query: 1436 LKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQ----- 1272
            LKFE P ++NM+ TH+ILE RTGGLVIWRSGS++VLYRGM YKL CVQSYT Q +     
Sbjct: 308  LKFEEPLSLNMKRTHEILEQRTGGLVIWRSGSSLVLYRGMAYKLHCVQSYTSQNKVDMNA 367

Query: 1271 -DKTKEIESSGGQVNNFAQSIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRF 1095
             D +  +ES   Q     +S+ T      ++  Y  +LS                LGPR+
Sbjct: 368  LDCSTNVESDTTQNIVVKESVRTMECFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRY 427

Query: 1094 KDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALG 915
            KDWSGRE             PGY+PPFR LP+GIRH L+D EMT FRR AR +PPHFALG
Sbjct: 428  KDWSGREPLPVDADLLPPVVPGYQPPFRRLPYGIRHCLKDHEMTTFRRLARTVPPHFALG 487

Query: 914  RNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVF 735
            RNR+LQGLA A+VKLW  SAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNKE+IVF
Sbjct: 488  RNRELQGLAEAIVKLWESSAIAKIAIKRGVQNTRNERMAEELKQLTGGTLLSRNKEFIVF 547

Query: 734  YRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETK 555
            YRGNDFLP  VT+ L E++K   LQQ+EEE AR+R LAL+ SN K ++ PLVAGTL+ET 
Sbjct: 548  YRGNDFLPPVVTKTLKERQKSRNLQQEEEEKARERVLALVGSNAKASKLPLVAGTLAETT 607

Query: 554  AATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFE 375
            AATS W +QP+ E++E+M ++SA+ + A+LV++LE KLA+A GK+ KA KAL K+Q++ E
Sbjct: 608  AATSRWGHQPSIEEVEEMKKNSALTQQASLVRYLEKKLALAIGKLRKANKALAKVQKHLE 667

Query: 374  PAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQ 195
            PA+ PTDLET++DEER LFRK+GLSMKPYL LGRRG++DG IENMHLHWKYRELVKI V+
Sbjct: 668  PADLPTDLETLSDEERILFRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKYRELVKIIVK 727

Query: 194  RKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQAL 15
             ++F QVKHIAISLEAESGG+LVS+DKTTKGY II+YRGKNY+ P   RPKNLLTRRQAL
Sbjct: 728  GENFAQVKHIAISLEAESGGLLVSLDKTTKGYAIIIYRGKNYMRPCVLRPKNLLTRRQAL 787

Query: 14   ARSI 3
            ARS+
Sbjct: 788  ARSV 791


>ref|XP_007012815.1| CRS1 / YhbY domain-containing protein, putative isoform 4 [Theobroma
            cacao] gi|508783178|gb|EOY30434.1| CRS1 / YhbY
            domain-containing protein, putative isoform 4 [Theobroma
            cacao]
          Length = 818

 Score =  724 bits (1868), Expect = 0.0
 Identities = 425/844 (50%), Positives = 538/844 (63%), Gaps = 14/844 (1%)
 Frame = -3

Query: 2492 ETRCLN---RALRFR-ICCSAHSLELGNQQSNPTRKKRKPRPSFLEQIEDKWSRKPSILI 2325
            +T C N   RAL+F+  CCS  ++++G + +    +KRKP+PSFL+QI+DKWS KP I  
Sbjct: 28   QTHCPNNSFRALKFKPSCCSHQTIKVGVEIT----RKRKPKPSFLDQIKDKWSLKPIIST 83

Query: 2324 H-KFPWXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAV--CQPVSSGLPEKVI 2154
              KFPW                         G +S++  ++   V    PVSS  P +VI
Sbjct: 84   REKFPWQEKEEFEEEEVERKQSF-------GGAISESERDEDPQVEGSDPVSSSFPSRVI 136

Query: 2153 LPPWEHGNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLD 1974
              PW HG      S+F     +                        +   +NFE K + D
Sbjct: 137  SAPWSHG------SEFNEPHFD-----------------------FVPEISNFESKIE-D 166

Query: 1973 EQNGEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDD 1794
                EK +   E P GN        ++ V G         +++   L+EE+  N  +K  
Sbjct: 167  SFASEKTI---EFPGGN--------KAEVVG-------GLIDKSESLNEEVNIN-KQKIG 207

Query: 1793 TPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNY-VKDLGDTSESVRLPWESESDQQCHEG 1617
             P            + V   E  ND +   +N+ V +  D   SV      E D     G
Sbjct: 208  LP----------VGKEVAAVEGLNDVVSSRENFEVSNSDDEGGSV------EGDS----G 247

Query: 1616 KRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVK 1437
            +  ++SNTE+ +++IPE E +RLRN+ALR VER KVG AG+TQALV+ IHE+WK+DEVVK
Sbjct: 248  RSKKRSNTEMVDRMIPEHESQRLRNVALRMVERTKVGVAGITQALVEYIHERWKMDEVVK 307

Query: 1436 LKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQ----- 1272
            LKFE P ++NM+ TH+ILE RTGGLVIWRSGS++VLYRGM YKL CVQSYT Q +     
Sbjct: 308  LKFEEPLSLNMKRTHEILEQRTGGLVIWRSGSSLVLYRGMAYKLHCVQSYTSQNKVDMNA 367

Query: 1271 -DKTKEIESSGGQVNNFAQSIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRF 1095
             D +  +ES   Q     +S+ T      ++  Y  +LS                LGPR+
Sbjct: 368  LDCSTNVESDTTQNIVVKESVRTMECFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRY 427

Query: 1094 KDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALG 915
            KDWSGRE             PGY+PPFR LP+GIRH L+D EMT FRR AR +PPHFALG
Sbjct: 428  KDWSGREPLPVDADLLPPVVPGYQPPFRRLPYGIRHCLKDHEMTTFRRLARTVPPHFALG 487

Query: 914  RNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVF 735
            RNR+LQGLA A+VKLW  SAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNKE+IVF
Sbjct: 488  RNRELQGLAEAIVKLWESSAIAKIAIKRGVQNTRNERMAEELKQLTGGTLLSRNKEFIVF 547

Query: 734  YRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETK 555
            YRGNDFLP  VT+ L E++K   LQQ+EEE AR+R LAL+ SN K ++ PLVAGTL+ET 
Sbjct: 548  YRGNDFLPPVVTKTLKERQKSRNLQQEEEEKARERVLALVGSNAKASKLPLVAGTLAETT 607

Query: 554  AATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFE 375
            AATS W +QP+ E++E+M ++SA+ + A+LV++LE KLA+A GK+ KA KAL K+Q++ E
Sbjct: 608  AATSRWGHQPSIEEVEEMKKNSALTQQASLVRYLEKKLALAIGKLRKANKALAKVQKHLE 667

Query: 374  PAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQ 195
            PA+ PTDLET++DEER LFRK+GLSMKPYL LGRRG++DG IENMHLHWKYRELVKI V+
Sbjct: 668  PADLPTDLETLSDEERILFRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKYRELVKIIVK 727

Query: 194  RKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQAL 15
             ++F QVKHIAISLEAESGG+LVS+DKTTKGY II+YRGKNY+ P   RPKNLLTRRQAL
Sbjct: 728  GENFAQVKHIAISLEAESGGLLVSLDKTTKGYAIIIYRGKNYMRPCVLRPKNLLTRRQAL 787

Query: 14   ARSI 3
            ARS+
Sbjct: 788  ARSV 791


>ref|XP_007012812.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|590575888|ref|XP_007012813.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|590575892|ref|XP_007012814.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|508783175|gb|EOY30431.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|508783176|gb|EOY30432.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|508783177|gb|EOY30433.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao]
          Length = 873

 Score =  724 bits (1868), Expect = 0.0
 Identities = 425/844 (50%), Positives = 538/844 (63%), Gaps = 14/844 (1%)
 Frame = -3

Query: 2492 ETRCLN---RALRFR-ICCSAHSLELGNQQSNPTRKKRKPRPSFLEQIEDKWSRKPSILI 2325
            +T C N   RAL+F+  CCS  ++++G + +    +KRKP+PSFL+QI+DKWS KP I  
Sbjct: 28   QTHCPNNSFRALKFKPSCCSHQTIKVGVEIT----RKRKPKPSFLDQIKDKWSLKPIIST 83

Query: 2324 H-KFPWXXXXXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAV--CQPVSSGLPEKVI 2154
              KFPW                         G +S++  ++   V    PVSS  P +VI
Sbjct: 84   REKFPWQEKEEFEEEEVERKQSF-------GGAISESERDEDPQVEGSDPVSSSFPSRVI 136

Query: 2153 LPPWEHGNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLD 1974
              PW HG      S+F     +                        +   +NFE K + D
Sbjct: 137  SAPWSHG------SEFNEPHFD-----------------------FVPEISNFESKIE-D 166

Query: 1973 EQNGEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDD 1794
                EK +   E P GN        ++ V G         +++   L+EE+  N  +K  
Sbjct: 167  SFASEKTI---EFPGGN--------KAEVVG-------GLIDKSESLNEEVNIN-KQKIG 207

Query: 1793 TPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNY-VKDLGDTSESVRLPWESESDQQCHEG 1617
             P            + V   E  ND +   +N+ V +  D   SV      E D     G
Sbjct: 208  LP----------VGKEVAAVEGLNDVVSSRENFEVSNSDDEGGSV------EGDS----G 247

Query: 1616 KRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVK 1437
            +  ++SNTE+ +++IPE E +RLRN+ALR VER KVG AG+TQALV+ IHE+WK+DEVVK
Sbjct: 248  RSKKRSNTEMVDRMIPEHESQRLRNVALRMVERTKVGVAGITQALVEYIHERWKMDEVVK 307

Query: 1436 LKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQ----- 1272
            LKFE P ++NM+ TH+ILE RTGGLVIWRSGS++VLYRGM YKL CVQSYT Q +     
Sbjct: 308  LKFEEPLSLNMKRTHEILEQRTGGLVIWRSGSSLVLYRGMAYKLHCVQSYTSQNKVDMNA 367

Query: 1271 -DKTKEIESSGGQVNNFAQSIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRF 1095
             D +  +ES   Q     +S+ T      ++  Y  +LS                LGPR+
Sbjct: 368  LDCSTNVESDTTQNIVVKESVRTMECFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRY 427

Query: 1094 KDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALG 915
            KDWSGRE             PGY+PPFR LP+GIRH L+D EMT FRR AR +PPHFALG
Sbjct: 428  KDWSGREPLPVDADLLPPVVPGYQPPFRRLPYGIRHCLKDHEMTTFRRLARTVPPHFALG 487

Query: 914  RNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVF 735
            RNR+LQGLA A+VKLW  SAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNKE+IVF
Sbjct: 488  RNRELQGLAEAIVKLWESSAIAKIAIKRGVQNTRNERMAEELKQLTGGTLLSRNKEFIVF 547

Query: 734  YRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETK 555
            YRGNDFLP  VT+ L E++K   LQQ+EEE AR+R LAL+ SN K ++ PLVAGTL+ET 
Sbjct: 548  YRGNDFLPPVVTKTLKERQKSRNLQQEEEEKARERVLALVGSNAKASKLPLVAGTLAETT 607

Query: 554  AATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFE 375
            AATS W +QP+ E++E+M ++SA+ + A+LV++LE KLA+A GK+ KA KAL K+Q++ E
Sbjct: 608  AATSRWGHQPSIEEVEEMKKNSALTQQASLVRYLEKKLALAIGKLRKANKALAKVQKHLE 667

Query: 374  PAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQ 195
            PA+ PTDLET++DEER LFRK+GLSMKPYL LGRRG++DG IENMHLHWKYRELVKI V+
Sbjct: 668  PADLPTDLETLSDEERILFRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKYRELVKIIVK 727

Query: 194  RKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQAL 15
             ++F QVKHIAISLEAESGG+LVS+DKTTKGY II+YRGKNY+ P   RPKNLLTRRQAL
Sbjct: 728  GENFAQVKHIAISLEAESGGLLVSLDKTTKGYAIIIYRGKNYMRPCVLRPKNLLTRRQAL 787

Query: 14   ARSI 3
            ARS+
Sbjct: 788  ARSV 791


>ref|XP_010242233.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nelumbo nucifera]
          Length = 868

 Score =  723 bits (1865), Expect = 0.0
 Identities = 418/831 (50%), Positives = 514/831 (61%), Gaps = 12/831 (1%)
 Frame = -3

Query: 2459 RICCSAHSLELGN---QQSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXXXXX 2289
            R C S+  +E      + +  T+KKRK +PSF +QI D+WS K      + PW       
Sbjct: 46   RFCSSSVEIETKGPHTEVARKTKKKRKLKPSFYDQIRDRWSLKLGSPRERLPWQEQESQG 105

Query: 2288 XXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRKKSQ 2109
                             N       +  F  +    S  L  + I  PW HG+KPRK   
Sbjct: 106  QEETGNDQSSSAP----NSSEGDGGNPSFDDLA---SFALGNRSISAPWSHGDKPRKP-- 156

Query: 2108 FGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQNGEKGVKDDETPV 1929
                                   ++  ++ ++QNS N  GKF                  
Sbjct: 157  -----------------------HFDSTTEIVQNSLNNGGKF------------------ 175

Query: 1928 GNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPNELSHTGEFLFNE 1749
                       + V  FS    I ++ E    D  +  +G+ K++  ++           
Sbjct: 176  -----------AEVHYFSEKSTIPKISE----DSVVNHSGSLKEEQRSDYIRDDSVKIGP 220

Query: 1748 VVKG-AEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCHEGKRLRKSNTEVAEKVI 1572
             + G +   + G G             +SVRLPWE E   +  +  R R+S TE+A K +
Sbjct: 221  PLTGFSGEQSTGNG-------------DSVRLPWEKEKFLESVDRGRWRRSTTELAAKTV 267

Query: 1571 PELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTH 1392
            PE EL+RLRN+ALR  ERIKVGAAG+TQ LVDSI EKWK DEVVKLKFEGP A+NM+ TH
Sbjct: 268  PETELRRLRNVALRMKERIKVGAAGITQDLVDSIIEKWKEDEVVKLKFEGPPALNMKRTH 327

Query: 1391 QILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQ--------DKTKEIESSGGQ 1236
            + LES+T GLVIWRSGS+VVLYRGM YK  CV+SY K  Q         K  +I+ SG  
Sbjct: 328  EALESKTRGLVIWRSGSSVVLYRGMSYKFPCVESYIKDNQANPDIASHSKESKIDFSGNI 387

Query: 1235 VNNFAQSIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRFKDWSGREXXXXXX 1056
                  +I T  +  +   +Y  +LS                LGPRF+DWSG E      
Sbjct: 388  C--VTDAIQTKESSSTGTMTYDKDLS-RELMDMTDLNNLLDELGPRFRDWSGCEPKPVDA 444

Query: 1055 XXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQLQGLALAMV 876
                   PGY+PPFRLLP+GIRH L++KEMT FRR AR +PPHFALGRNRQLQGLA AMV
Sbjct: 445  DLLPCVVPGYKPPFRLLPYGIRHCLKNKEMTSFRRLARSMPPHFALGRNRQLQGLARAMV 504

Query: 875  KLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGNDFLPSGVTQ 696
            KLW +S IAKIAIKRGVQNTCNERMAEELK LTGGTLLSRNK+YIVFYRGNDFL   VT+
Sbjct: 505  KLWERSEIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNKDYIVFYRGNDFLSPVVTE 564

Query: 695  ALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETKAATSHWANQPNGE 516
            AL+E++K A L+QDEEE ARQRALALI SN K  + PLVAGTL+ET AA S WA QP+ E
Sbjct: 565  ALVERKKLAELRQDEEEQARQRALALIISNAKAIKGPLVAGTLAETVAANSRWAKQPSSE 624

Query: 515  DLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQPTDLETIND 336
            D++KMM+D+A++RHA+LV++LE KLA A+ K+ KAEK L K+QE  +P E PTDLET+ D
Sbjct: 625  DMQKMMKDAALSRHASLVRYLEKKLAQAQEKVKKAEKTLRKVQEFLKPTELPTDLETLTD 684

Query: 335  EERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSFPQVKHIAIS 156
            EER+LFRKMGLSMKP+L LGRRG+FDG +ENMHLHWKYRELVKI V+RKSF Q+KHIAIS
Sbjct: 685  EERYLFRKMGLSMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKRKSFAQIKHIAIS 744

Query: 155  LEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
            LEAESGG+L+SVDKTTKG+ II+YRGKNY  P A RP+NLLTR+QAL RSI
Sbjct: 745  LEAESGGLLISVDKTTKGFAIIIYRGKNYQRPHALRPQNLLTRKQALMRSI 795


>ref|XP_002309217.2| hypothetical protein POPTR_0006s15340g [Populus trichocarpa]
            gi|550336383|gb|EEE92740.2| hypothetical protein
            POPTR_0006s15340g [Populus trichocarpa]
          Length = 977

 Score =  722 bits (1863), Expect = 0.0
 Identities = 433/871 (49%), Positives = 525/871 (60%), Gaps = 66/871 (7%)
 Frame = -3

Query: 2417 QSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXXXXXXXXXXXXXXXXXXVGFS 2238
            Q +  + KRKP+PSF EQI  KWS K +    KFPW                        
Sbjct: 40   QVHAAKSKRKPKPSFFEQIHHKWSLKLTSTRDKFPWQEQEQQQQQQQEEEEEEEEED--- 96

Query: 2237 NGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRKKSQFGNQVRNSRQTSNSTEN 2058
               + +   +   +V   VS  LP ++  PPW HG  P K++ F  Q R      NS   
Sbjct: 97   ---IKEV--DAVPSVSDTVSFNLPNRLTTPPWIHGATP-KQAHFDYQPRKG---DNSIHG 147

Query: 2057 LNGHPQNYAISSRVIQNSNNFEGKFDLDEQNGEKGVKDDETPVGNLNGTNERSESNVAGF 1878
            +  + ++  ++  VI      E + +LD    E+ V  D+  V  L    E  + +V  +
Sbjct: 148  VFENREDNVVNG-VIDKEERIEKEVNLDNNFKEQVVDFDDASVFQLPEAKEIKDCSVHRY 206

Query: 1877 SVVQDIKRVEEKVKLD------EEIGQ------NGAKKDDTPNELSHTGEFL------FN 1752
            +  ++    EE  + D      E +G+      N  K     N +   G+         N
Sbjct: 207  AENREEDNAEEDSREDNVANKKESVGKKINCNLNKFKDKHYYNSVELPGDKEKSIVTDLN 266

Query: 1751 EVVKGAEHNNDG-------------------------------------LGVFQNYVKDL 1683
            +VV   E   DG                                     LG F+N     
Sbjct: 267  DVVSLTEKPFDGDDGDFGNIEVCNDGHCDSFENLSCKDSNDVVSVSKKQLGDFENVEVSN 326

Query: 1682 GDTSESVRLPWESESD-QQCHEGKRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVG 1506
               S S  LPW+  S      E K  +KSNT++AE+++PE ELKRLRN+ALR +ERIKVG
Sbjct: 327  NGVSNSNELPWKRTSGLDSLGEDKSRKKSNTDLAERMLPEHELKRLRNVALRMLERIKVG 386

Query: 1505 AAGVTQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLY 1326
            A G+TQ LVD+IHEKWKLDEVVKLKFE P + NM+ TH+ILESRTGGL+IWRSGS+VV+Y
Sbjct: 387  ATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRTGGLIIWRSGSSVVMY 446

Query: 1325 RGMGYKLDCVQSYTKQTQ----------DKTKEIESSGGQVNNFAQSIATCSAEPSTAKS 1176
            RG  YK  CVQSYTKQ +          + T    SS G + + A+++   S  P  AK 
Sbjct: 447  RGTTYKFQCVQSYTKQNEAGMDVLQYAEEATNSATSSAG-MKDLARTME--SIIPDAAK- 502

Query: 1175 YSSNLSVXXXXXXXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHG 996
            Y  +LS                LGPR+KDW GRE             PGY+ P RLLP+G
Sbjct: 503  YLKDLSQEELMDFSELNHLLDELGPRYKDWCGREPLPVDADLLPAVVPGYKSPLRLLPYG 562

Query: 995  IRHGLRDKEMTFFRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNT 816
            ++  L +K  T FRR AR  PPHF LGRNR+LQGLA AMVKLW +SAIAKIAIKRGVQ T
Sbjct: 563  VKPCLSNKNTTNFRRLARTTPPHFVLGRNRELQGLANAMVKLWERSAIAKIAIKRGVQYT 622

Query: 815  CNERMAEELKVLTGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIAR 636
             NE MAEELK LTGGTLLSRNKEYIVFYRGNDFLP  + + L E+ K A L QDEE+ AR
Sbjct: 623  RNEIMAEELKRLTGGTLLSRNKEYIVFYRGNDFLPPVINETLKERRKLAFLYQDEEDQAR 682

Query: 635  QRALALIESNVKVAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKF 456
            Q   A I S+VK  + PLVAGTL ET AA S W NQP+ ED+E+M+RDSA+ARHA+LVK 
Sbjct: 683  QMTSAFIGSSVKTTKGPLVAGTLVETVAAISRWGNQPSSEDVEEMIRDSALARHASLVKH 742

Query: 455  LENKLAIAKGKITKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLG 276
            LENKLA AKGK+ K+EK L K+QEN EP E PTDLETI+DEERFLFRK+GLSMKPYLFLG
Sbjct: 743  LENKLAQAKGKLKKSEKDLAKVQENLEPTELPTDLETISDEERFLFRKIGLSMKPYLFLG 802

Query: 275  RRGIFDGIIENMHLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYV 96
            RRG+FDG IENMHLHWKYRELVKI V+RK   QVKHIAISLEAESGG+LVSVD+TTKGY 
Sbjct: 803  RRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYA 862

Query: 95   IIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
            IIVYRGKNY+ P A RP+NLLTRRQALARS+
Sbjct: 863  IIVYRGKNYMRPQAMRPENLLTRRQALARSV 893


>ref|XP_011460155.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Fragaria vesca subsp. vesca]
          Length = 952

 Score =  709 bits (1830), Expect = 0.0
 Identities = 425/865 (49%), Positives = 532/865 (61%), Gaps = 41/865 (4%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQQSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXXX 2295
            RA RFR+ C    +++  +   PT+KKRKP+PSF +QI+DKWS K     HKFPW     
Sbjct: 27   RAHRFRVSCKTVEIKVDIE---PTKKKRKPKPSFYQQIQDKWSMKVDSPRHKFPWQNQEE 83

Query: 2294 XXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRKK 2115
                                G   Q+    F  V Q +S  +P  V   PW +  KP  K
Sbjct: 84   SEDEEEDEEEK-------EEGESQQSEVRVFKPVDQEMSFSMPNPVKYAPWANRTKP-IK 135

Query: 2114 SQFG----------------------------NQVRNSRQTSNSTENLNGHPQNYAI--- 2028
            +Q G                            ++V N R+  +    L+      ++   
Sbjct: 136  TQVGSIKPEVDYEHEIYKPSVANSDIDATKEFSKVENFREEFDGNGKLDRDVDEVSVGFS 195

Query: 2027 SSRVIQNSNNFEGKFDLDEQNGEKGVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVE 1848
              R    S  FE +FD   +NG+   + DE  VG     NE  E  +   S       +E
Sbjct: 196  KERKTMVSKKFEQEFD---RNGKLEREIDEVFVGVSKEENE-VEKMITSKSFEHRKGILE 251

Query: 1847 EKVKLDEEIGQNGAKKDDTPNELSHTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSE 1668
             ++   + I    + K++T       G  + +E V G   N++ +  F   V    D+  
Sbjct: 252  GRI---DRISVGVSVKEETVVSERLIGAAV-DETVSGDSENDENVVTF---VSSGSDSRA 304

Query: 1667 SVRLPWESESDQQCHEGKRLRK--SNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGV 1494
            S RLPWE E +    EG + RK  SNT  AE  +P+ ELKRLRN++LR +ER KVGAAG+
Sbjct: 305  SARLPWEREGELVNEEGGKTRKKWSNTLSAETSLPDHELKRLRNVSLRMLERTKVGAAGI 364

Query: 1493 TQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMG 1314
            TQ+LVD+IHEKWK+DEVVKLKFE P ++NMR TH ILES+TGGLVIWRSGS+VVLYRG+ 
Sbjct: 365  TQSLVDAIHEKWKVDEVVKLKFEEPLSLNMRRTHGILESKTGGLVIWRSGSSVVLYRGIS 424

Query: 1313 YKLDCVQSYTKQTQDKTKEIES------SGGQVNNFAQSIATCS--AEPSTAKSYSSNLS 1158
            Y L CV+SYTKQ Q  +  ++         G  N  A+ +A+ +    P++ K Y  +LS
Sbjct: 425  YNLQCVKSYTKQRQTGSHMLQDLEDTVRRDGTHNVGAKDVASTTELLSPNSPK-YMKDLS 483

Query: 1157 VXXXXXXXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLR 978
                            LGPRFKDW GRE             PGY+ PFRLLP+G+R GL+
Sbjct: 484  KKELMELSDLNHLLDELGPRFKDWIGREPLPVDADLLPAVVPGYQTPFRLLPYGVRPGLK 543

Query: 977  DKEMTFFRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMA 798
            DK+MT FRR AR  PPHFALGR+++LQGLA AMVKLW K AIAKIAIKRGVQNT NERMA
Sbjct: 544  DKDMTKFRRLARAAPPHFALGRSKELQGLAKAMVKLWEKCAIAKIAIKRGVQNTRNERMA 603

Query: 797  EELKVLTGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALAL 618
            EELK LTGGTLLSRNK++IVFYRGNDFLP  VT  L E+ +   LQQDEEE ARQ     
Sbjct: 604  EELKRLTGGTLLSRNKDFIVFYRGNDFLPPVVTGVLKERREMRELQQDEEEKARQMTSDY 663

Query: 617  IESNVKVAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLA 438
            IES  + +   LVAGTL+ET AAT+ W  Q   ED++KM RDS + + A+LV++LE KLA
Sbjct: 664  IESRSEASNGQLVAGTLAETIAATARWIKQLTIEDVDKMTRDSNLEKRASLVRYLEKKLA 723

Query: 437  IAKGKITKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFD 258
            +AKGK+ KAEKAL K+QEN +PA+ P DLE + DE+RFLFRK+GLSMKP+L LGRR ++ 
Sbjct: 724  LAKGKLKKAEKALAKVQENLDPADLPDDLEILTDEDRFLFRKIGLSMKPFLLLGRREVYS 783

Query: 257  GIIENMHLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRG 78
            G IENMHLHWK+RELVKI V+ K+F QVKHIAISLEAESGG+LVS+DKTTKGY II+YRG
Sbjct: 784  GTIENMHLHWKHRELVKIIVRGKNFKQVKHIAISLEAESGGLLVSLDKTTKGYAIILYRG 843

Query: 77   KNYLPPSAFRPKNLLTRRQALARSI 3
            KNY  P   RP+NLLTRRQALARSI
Sbjct: 844  KNYQCPLPLRPRNLLTRRQALARSI 868


>ref|XP_009799178.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana sylvestris]
          Length = 827

 Score =  707 bits (1826), Expect = 0.0
 Identities = 366/559 (65%), Positives = 432/559 (77%), Gaps = 2/559 (0%)
 Frame = -3

Query: 1673 SESVRLPWESESDQQCHEGKRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGV 1494
            + S RLPW+ E D     G +LRKSNTE+AEK+IPE +LK+LRN ALR VERIKVG+AGV
Sbjct: 212  ANSDRLPWQGERDVGPASGDKLRKSNTEMAEKMIPEPQLKKLRNAALRMVERIKVGSAGV 271

Query: 1493 TQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMG 1314
            TQ LVDSIHEKWK+DE+VKL+FEGP + NM+ TH+ILE RTGGLVIWRSGS++VLYRG+ 
Sbjct: 272  TQELVDSIHEKWKVDEIVKLRFEGPPSHNMKRTHEILEHRTGGLVIWRSGSSIVLYRGIP 331

Query: 1313 YKLDCVQSYTKQTQDKTKEIESSGGQVNNFAQSIATCSAEPSTAKSYS--SNLSVXXXXX 1140
            YKL CVQS+T +  D    I+ S    N+  QS    S   +T +  +  SNLS      
Sbjct: 332  YKLPCVQSFTTRNDD----IDESESSKNDNGQSFGVKSLNEATERPRNGFSNLSGAEIRD 387

Query: 1139 XXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTF 960
                      +GPRFKDWSGRE             PGYRPPFR LP+G +  L++KEMT+
Sbjct: 388  LSELNMLLDEVGPRFKDWSGREPLPVDADMLPAVVPGYRPPFRRLPYGAKLNLKNKEMTY 447

Query: 959  FRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVL 780
             RR+AR++PPHFALGRNR+LQGLA AM KLW  SAIAKIAIKRGVQNT NERMAEELKVL
Sbjct: 448  LRRTARIMPPHFALGRNRELQGLAAAMAKLWRGSAIAKIAIKRGVQNTSNERMAEELKVL 507

Query: 779  TGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVK 600
            TGGTL+SRNK+YIVFYRGNDFLP  VT+AL+E E ++   QD+EE ARQRA  LI S+ K
Sbjct: 508  TGGTLISRNKDYIVFYRGNDFLPPRVTEALVEAESKSAFLQDQEEQARQRAATLIHSDTK 567

Query: 599  VAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKI 420
              + PL+AGTLSET AATS W NQP+ E+ EKMMRD+A+ARHA+LVK LE KLA AKGKI
Sbjct: 568  APKRPLIAGTLSETIAATSRWGNQPSIEEREKMMRDAAIARHASLVKHLEQKLAHAKGKI 627

Query: 419  TKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENM 240
             KAE  L KLQEN EP+E PTDLE ++ EERFLFRKMGLSMKP+L LGRR +FDG IEN+
Sbjct: 628  KKAENLLRKLQENREPSELPTDLEILSAEERFLFRKMGLSMKPFLLLGRRDVFDGTIENI 687

Query: 239  HLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPP 60
            HLHWKYRELVKI  +R++  Q+KHIA++LEAESGG+LVS+DKTT+GY II+YRGKNY  P
Sbjct: 688  HLHWKYRELVKIIAERRNAAQIKHIAVTLEAESGGLLVSIDKTTQGYAIILYRGKNYQRP 747

Query: 59   SAFRPKNLLTRRQALARSI 3
            S FRPKNLLT+RQALARSI
Sbjct: 748  SEFRPKNLLTKRQALARSI 766



 Score = 85.9 bits (211), Expect = 2e-13
 Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQ-QSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXX 2298
            RA   RI CS+ ++    + Q+N T+KK+KPRPSFLEQ++DKWS K + L  KFPW    
Sbjct: 42   RAKSIRIYCSSQTIHSDKENQTNQTKKKQKPRPSFLEQVQDKWSVKTTSLREKFPWQELN 101

Query: 2297 XXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRK 2118
                                + + S + +E+   V + VSSG   KV L PW HGN+P+K
Sbjct: 102  SVSIEEVAE----------QDLLSSVSKTEENPVVNESVSSGSRIKVNLAPWVHGNQPKK 151

Query: 2117 KSQFGNQVRNSRQTSNSTENLN 2052
                  + RN  + +N   N++
Sbjct: 152  SQLDSFEARNFEKNANWENNVS 173


>gb|KHG14705.1| hypothetical protein F383_17214 [Gossypium arboreum]
          Length = 865

 Score =  706 bits (1821), Expect = 0.0
 Identities = 414/831 (49%), Positives = 520/831 (62%), Gaps = 7/831 (0%)
 Frame = -3

Query: 2474 RALRFRICCSAH-SLELGNQQSNPTRKKRKPRPSFLEQIEDKWSRKPSILIH-KFPWXXX 2301
            RAL+F+  C +H ++++G   S   +KKRKP+PSFL QI+DKWS+KP I    K PW   
Sbjct: 36   RALKFKSYCVSHQTIKVGIDIS---KKKRKPKPSFLYQIKDKWSQKPIISTREKLPWQEK 92

Query: 2300 XXXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAV--CQPVSSGLPEKVILPPWEHGNK 2127
                                     S+T S++   V     VS  LP +VI  PW HG  
Sbjct: 93   EELEEQEEVEKEQTF------EATASETESDEDPRVEASDQVSFPLPSRVIAAPWSHG-- 144

Query: 2126 PRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQNGEKGVK 1947
             RK ++                          +    +  S  FE + ++   N      
Sbjct: 145  -RKFNE--------------------------LHFDFVPESPEFESQIEVSFAN------ 171

Query: 1946 DDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPNELSHTG 1767
              E P+  +                     R+E+   LDEEI  N  K    P   +H  
Sbjct: 172  --EKPIDFVGD-------------------RIEKPELLDEEISFNKQK----PTLSAH-- 204

Query: 1766 EFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPWESESDQQCHEGKR-LRKSNTE 1590
                   +   E  N+ +   QN       ++E   +    E D     GKR  +KSNTE
Sbjct: 205  -----RKIAAVEGINEVVSSRQNLEVSTNGSNEGGSI----EGD-----GKRGKKKSNTE 250

Query: 1589 VAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFEGPTAM 1410
            +AE++IPE EL+RLRN ALR VER KVGAAG+TQALV+ IHE+WKLDEV+KLKFE P ++
Sbjct: 251  MAERMIPEHELRRLRNFALRMVERTKVGAAGITQALVEHIHERWKLDEVIKLKFEEPLSL 310

Query: 1409 NMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKTKEIESSGGQVN 1230
            NM+ TH++LE RTGGLVIWR+G +VVLYRGM YKL CVQSY+ Q Q  T  ++       
Sbjct: 311  NMKRTHEVLEKRTGGLVIWRAGGSVVLYRGMAYKLHCVQSYSGQDQADTSALDVITTNTE 370

Query: 1229 NFA--QSIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRFKDWSGREXXXXXX 1056
            N      + T  +   ++  Y  +LS                LGPR+KDWSGRE      
Sbjct: 371  NMVVKDCVRTEESFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRYKDWSGREPLPVDA 430

Query: 1055 XXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQLQGLALAMV 876
                   PGY+PPFR LP+G+RH L+D EMT FRR AR +PPHFALGRNR+LQGLA A+V
Sbjct: 431  DLLPPVVPGYQPPFRRLPYGVRHCLKDCEMTTFRRLARSMPPHFALGRNRELQGLAQAIV 490

Query: 875  KLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGNDFLPSGVTQ 696
             LW ++AIAKIA+KRGV+NT NERMAEELK LTGGTLLSRNKE+IVFYRGNDFLP  VT 
Sbjct: 491  NLWERTAIAKIAVKRGVENTRNERMAEELKRLTGGTLLSRNKEFIVFYRGNDFLPPVVTN 550

Query: 695  ALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETKAATSHWANQPNGE 516
             L E +K   L Q+EEE AR RALAL+ SNVK +  PLVAGTL+ET AATS W +QP+ +
Sbjct: 551  TLKEMQKSRNLLQEEEEEARGRALALVGSNVKASTLPLVAGTLAETTAATSCWGHQPSPD 610

Query: 515  DLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQPTDLETIND 336
            ++E+M R+SA+ + A+LV+ LE KLA+AKGK+TKA KAL K+QE+ +P + PTDLET+++
Sbjct: 611  EVEEMKRNSALTQQASLVRHLEKKLALAKGKLTKANKALAKVQEHLDPTDLPTDLETLSE 670

Query: 335  EERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSFPQVKHIAIS 156
            EER LFRK+GLSMKPYL LG+RG++DG IENMHLHWKYRELVKI V+R+S  QVKHIAIS
Sbjct: 671  EERILFRKIGLSMKPYLLLGKRGVYDGTIENMHLHWKYRELVKILVKRESLAQVKHIAIS 730

Query: 155  LEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
            LEAESGG+LVS+DKTTKGY II+YRGKNYL P   RPKNLLT+RQALARS+
Sbjct: 731  LEAESGGVLVSLDKTTKGYAIIIYRGKNYLSPLEMRPKNLLTKRQALARSV 781


>ref|XP_008450865.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Cucumis melo]
            gi|659099970|ref|XP_008450866.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Cucumis melo]
          Length = 844

 Score =  705 bits (1820), Expect = 0.0
 Identities = 404/840 (48%), Positives = 514/840 (61%), Gaps = 18/840 (2%)
 Frame = -3

Query: 2468 LRFRICCSAHSLELGNQQSNPTR------KKRKPRPSFLEQIEDKWSRKPSILIHKFPWX 2307
            LRF+I CS +++++  Q     R      KKRKPRPSFLEQI  KWS KP    H FPW 
Sbjct: 43   LRFKIHCSNNTIQVETQPPRRIRVDFEVKKKRKPRPSFLEQIRHKWSTKPISSTHTFPWQ 102

Query: 2306 XXXXXXXXXXXXXXXXXXXVGFSNGIVSQTA---SEKFSAVCQPVSSGLPEKVILPPWEH 2136
                                     + +QT+    E  + V QPV +    + I  PW H
Sbjct: 103  QQEQDRQHKQDEEEEEEEEEEEEEEVANQTSVSIRESTTDVTQPVQT----RSISAPWAH 158

Query: 2135 GNKPRKKSQFGNQVRNSRQTSNSTENLNGHPQNYAISSRVIQNSNNFEGKFDLDEQNGEK 1956
            G++                                        S N +  F     NGE 
Sbjct: 159  GSQ----------------------------------------SRNDQFDFKPKTPNGE- 177

Query: 1955 GVKDDETPVGNLNGTNERSESNVAGFSVVQDIKRVEEKVKLDEEIGQNGAKKDDTPNELS 1776
             V ++ + +     T++ S  N +  S+ +          + ++  ++ A+ D     ++
Sbjct: 178  -VINEMSKIS----TDDTSNRNASTISIDE----------ISDDSSEDEAEIDTVVLPVT 222

Query: 1775 HTGEFLFNEVVKGAEHNNDGLGVFQNYVKDLGDTSESVRLPW--ESESDQQCHEGKRLRK 1602
                 L  + V     +ND  G               V LPW  E +SD +   G+R  +
Sbjct: 223  EKRSLLSKKFVHSVSSDNDDNG--------------RVDLPWKREPQSDSEVDAGQR--R 266

Query: 1601 SNTEVAEKVIPELELKRLRNLALRTVERIKVGAAGVTQALVDSIHEKWKLDEVVKLKFEG 1422
            S T +AE+++PE EL+RLRN++LR VERI+VG AG+TQ L+DSIHEKWK+DEVVKLKFEG
Sbjct: 267  SKTLLAEQMLPEHELRRLRNISLRMVERIEVGVAGITQELLDSIHEKWKVDEVVKLKFEG 326

Query: 1421 PTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYTKQTQDKTKEIESSG 1242
            P  +NM+  H+ LE++TGGLVIWRSGS +VLYRGM Y L CVQSY KQ Q ++K ++ S 
Sbjct: 327  PLTVNMKRAHEKLENKTGGLVIWRSGSLIVLYRGMTYHLPCVQSYAKQNQARSKTLDGSN 386

Query: 1241 GQVNNFAQ-------SIATCSAEPSTAKSYSSNLSVXXXXXXXXXXXXXXXLGPRFKDWS 1083
               ++          ++ T S   S A  ++  LS                +GPRFKDWS
Sbjct: 387  NVESDDTTRNEKSHTTVGTMSTIVSGASKHTKTLSKKELMELSDLNHLLDEIGPRFKDWS 446

Query: 1082 GREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGRNRQ 903
            G E             PGY+PP R+LP+G+RH LR+KE+T FRR AR +PPHFALGRNRQ
Sbjct: 447  GCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTVFRRLARKMPPHFALGRNRQ 506

Query: 902  LQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFYRGN 723
            LQGLA AMVKLW K AIAKIAIKRGV+NT NERMAEEL++LTGGTLLSRNKEYIVFYRGN
Sbjct: 507  LQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRILTGGTLLSRNKEYIVFYRGN 566

Query: 722  DFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNVKVAEWPLVAGTLSETKAATS 543
            D+LP  +T+AL E+ K A  QQD EE  RQ A   +ES VK +  PLVAGTL+ET AATS
Sbjct: 567  DYLPPNITEALKERRKLADRQQDVEEQVRQVASVAVESKVKASNAPLVAGTLAETIAATS 626

Query: 542  HWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGKITKAEKALLKLQENFEPAEQ 363
             W +QP+G D+E M  DSA+A+  +L+++L+ KLA+AKGK+   EK + KLQE  EP++ 
Sbjct: 627  RWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKGKVKNTEKIIAKLQEKKEPSDL 686

Query: 362  PTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIENMHLHWKYRELVKIFVQRKSF 183
            PTDLETI DEER LFRK+GLSMKPYL LGRRG++DG IENMHLHWK+RELVKI V+ K+ 
Sbjct: 687  PTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKFRELVKIIVRGKTL 746

Query: 182  PQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALARSI 3
             QVKHIAISLEAES G+++S+DKTTKGY +IVYRGKNY  P A RPKN+LTRRQALARSI
Sbjct: 747  QQVKHIAISLEAESNGVVISLDKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRRQALARSI 806


>ref|XP_009602353.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Nicotiana tomentosiformis]
          Length = 830

 Score =  702 bits (1811), Expect = 0.0
 Identities = 362/560 (64%), Positives = 429/560 (76%), Gaps = 2/560 (0%)
 Frame = -3

Query: 1676 TSESVRLPWESESDQQCHEGKRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAG 1497
            +  SVRLPW+ E D     G +LRKSN E+AEK+IPE +LK+LRN ALR VERIKVG+AG
Sbjct: 212  SKNSVRLPWQGERDVGPVGGDKLRKSNAEMAEKMIPEPQLKKLRNAALRLVERIKVGSAG 271

Query: 1496 VTQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGM 1317
            +TQ LVDSIHEKWK+DE+VKL+FEGP + NM+ TH+ILE RTGGLVIWRSGS++VLYRG+
Sbjct: 272  ITQELVDSIHEKWKVDEIVKLRFEGPPSHNMKRTHEILEHRTGGLVIWRSGSSIVLYRGI 331

Query: 1316 GYKLDCVQSYTKQTQDKTKEIESSGGQVNNFAQSIATCSAEPSTAKSYS--SNLSVXXXX 1143
             YKL CVQS+T +  D    I+ S    N   QS    S   +T +  +  SNLS     
Sbjct: 332  SYKLPCVQSFTTRNDD----IDESESSKNANGQSFGVKSLNEATERPRNGFSNLSGAEIM 387

Query: 1142 XXXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMT 963
                       +GPRFKDWSGRE             PGYRPPFR LP+G +  L++KEMT
Sbjct: 388  DLSELNMLLDEVGPRFKDWSGREPLPVDADLLPAVVPGYRPPFRRLPYGAKLNLKNKEMT 447

Query: 962  FFRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKV 783
            + RR+AR++PPHFALGRNR+LQGLA AM KLW ++AIAKIAIKRGV NT NERMAEELKV
Sbjct: 448  YLRRTARIMPPHFALGRNRELQGLAAAMAKLWRRNAIAKIAIKRGVHNTSNERMAEELKV 507

Query: 782  LTGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNV 603
            LTGGTL+SRNK+YIVFYRGNDFLP  VT+AL+E E ++   QD+EE ARQRA  LI S+ 
Sbjct: 508  LTGGTLVSRNKDYIVFYRGNDFLPPRVTEALVEAESKSAFLQDQEEQARQRAATLIHSDT 567

Query: 602  KVAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGK 423
            K  + PL+AGTLSET AATS W NQP+ E+ EKMMRD+AVARHA+LVK LE KLA AKGK
Sbjct: 568  KAPKRPLIAGTLSETIAATSRWGNQPSIEEREKMMRDAAVARHASLVKHLEQKLAHAKGK 627

Query: 422  ITKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIEN 243
            I KAE  L KLQEN EP+E PTDLE ++ EERFLFRKMGLSMKP+L LGRR +FDG IEN
Sbjct: 628  IKKAENMLRKLQENREPSELPTDLEILSAEERFLFRKMGLSMKPFLLLGRRDVFDGTIEN 687

Query: 242  MHLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLP 63
            +HLHWKYRELVKI  +R++  Q+KHIA++LE ESGG+LVS+DKTT+GY II+YRGKNY  
Sbjct: 688  IHLHWKYRELVKIIAERRNAAQIKHIAVTLETESGGLLVSIDKTTQGYAIILYRGKNYQR 747

Query: 62   PSAFRPKNLLTRRQALARSI 3
            PS FRPKNLLT+RQAL RSI
Sbjct: 748  PSEFRPKNLLTKRQALTRSI 767



 Score = 81.6 bits (200), Expect = 3e-12
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQ-QSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXX 2298
            RA   RI CS+ ++    + Q+N ++KK+KPRPSFLEQ+++KWS K + L  KFPW    
Sbjct: 42   RAKNIRIYCSSQTIHSDKENQTNQSKKKQKPRPSFLEQVQNKWSVKTTSLREKFPWQELN 101

Query: 2297 XXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRK 2118
                                    S   +E+   V + VSSG   KV L PW HGN+P+K
Sbjct: 102  SVSIEEVAEQDLQ----------FSVAKTEENPVVNESVSSGSRIKVNLAPWVHGNQPKK 151

Query: 2117 KSQFGNQVRNSRQTSNSTENLN 2052
                  + RN  + +N   N++
Sbjct: 152  SQLDSFEARNFEKNANWENNVS 173


>ref|XP_009602352.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana tomentosiformis]
          Length = 832

 Score =  702 bits (1811), Expect = 0.0
 Identities = 362/560 (64%), Positives = 429/560 (76%), Gaps = 2/560 (0%)
 Frame = -3

Query: 1676 TSESVRLPWESESDQQCHEGKRLRKSNTEVAEKVIPELELKRLRNLALRTVERIKVGAAG 1497
            +  SVRLPW+ E D     G +LRKSN E+AEK+IPE +LK+LRN ALR VERIKVG+AG
Sbjct: 212  SKNSVRLPWQGERDVGPVGGDKLRKSNAEMAEKMIPEPQLKKLRNAALRLVERIKVGSAG 271

Query: 1496 VTQALVDSIHEKWKLDEVVKLKFEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGM 1317
            +TQ LVDSIHEKWK+DE+VKL+FEGP + NM+ TH+ILE RTGGLVIWRSGS++VLYRG+
Sbjct: 272  ITQELVDSIHEKWKVDEIVKLRFEGPPSHNMKRTHEILEHRTGGLVIWRSGSSIVLYRGI 331

Query: 1316 GYKLDCVQSYTKQTQDKTKEIESSGGQVNNFAQSIATCSAEPSTAKSYS--SNLSVXXXX 1143
             YKL CVQS+T +  D    I+ S    N   QS    S   +T +  +  SNLS     
Sbjct: 332  SYKLPCVQSFTTRNDD----IDESESSKNANGQSFGVKSLNEATERPRNGFSNLSGAEIM 387

Query: 1142 XXXXXXXXXXXLGPRFKDWSGREXXXXXXXXXXXXXPGYRPPFRLLPHGIRHGLRDKEMT 963
                       +GPRFKDWSGRE             PGYRPPFR LP+G +  L++KEMT
Sbjct: 388  DLSELNMLLDEVGPRFKDWSGREPLPVDADLLPAVVPGYRPPFRRLPYGAKLNLKNKEMT 447

Query: 962  FFRRSARVLPPHFALGRNRQLQGLALAMVKLWGKSAIAKIAIKRGVQNTCNERMAEELKV 783
            + RR+AR++PPHFALGRNR+LQGLA AM KLW ++AIAKIAIKRGV NT NERMAEELKV
Sbjct: 448  YLRRTARIMPPHFALGRNRELQGLAAAMAKLWRRNAIAKIAIKRGVHNTSNERMAEELKV 507

Query: 782  LTGGTLLSRNKEYIVFYRGNDFLPSGVTQALMEKEKEAVLQQDEEEIARQRALALIESNV 603
            LTGGTL+SRNK+YIVFYRGNDFLP  VT+AL+E E ++   QD+EE ARQRA  LI S+ 
Sbjct: 508  LTGGTLVSRNKDYIVFYRGNDFLPPRVTEALVEAESKSAFLQDQEEQARQRAATLIHSDT 567

Query: 602  KVAEWPLVAGTLSETKAATSHWANQPNGEDLEKMMRDSAVARHAALVKFLENKLAIAKGK 423
            K  + PL+AGTLSET AATS W NQP+ E+ EKMMRD+AVARHA+LVK LE KLA AKGK
Sbjct: 568  KAPKRPLIAGTLSETIAATSRWGNQPSIEEREKMMRDAAVARHASLVKHLEQKLAHAKGK 627

Query: 422  ITKAEKALLKLQENFEPAEQPTDLETINDEERFLFRKMGLSMKPYLFLGRRGIFDGIIEN 243
            I KAE  L KLQEN EP+E PTDLE ++ EERFLFRKMGLSMKP+L LGRR +FDG IEN
Sbjct: 628  IKKAENMLRKLQENREPSELPTDLEILSAEERFLFRKMGLSMKPFLLLGRRDVFDGTIEN 687

Query: 242  MHLHWKYRELVKIFVQRKSFPQVKHIAISLEAESGGILVSVDKTTKGYVIIVYRGKNYLP 63
            +HLHWKYRELVKI  +R++  Q+KHIA++LE ESGG+LVS+DKTT+GY II+YRGKNY  
Sbjct: 688  IHLHWKYRELVKIIAERRNAAQIKHIAVTLETESGGLLVSIDKTTQGYAIILYRGKNYQR 747

Query: 62   PSAFRPKNLLTRRQALARSI 3
            PS FRPKNLLT+RQAL RSI
Sbjct: 748  PSEFRPKNLLTKRQALTRSI 767



 Score = 81.6 bits (200), Expect = 3e-12
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
 Frame = -3

Query: 2474 RALRFRICCSAHSLELGNQ-QSNPTRKKRKPRPSFLEQIEDKWSRKPSILIHKFPWXXXX 2298
            RA   RI CS+ ++    + Q+N ++KK+KPRPSFLEQ+++KWS K + L  KFPW    
Sbjct: 42   RAKNIRIYCSSQTIHSDKENQTNQSKKKQKPRPSFLEQVQNKWSVKTTSLREKFPWQELN 101

Query: 2297 XXXXXXXXXXXXXXXXVGFSNGIVSQTASEKFSAVCQPVSSGLPEKVILPPWEHGNKPRK 2118
                                    S   +E+   V + VSSG   KV L PW HGN+P+K
Sbjct: 102  SVSIEEVAEQDLQ----------FSVAKTEENPVVNESVSSGSRIKVNLAPWVHGNQPKK 151

Query: 2117 KSQFGNQVRNSRQTSNSTENLN 2052
                  + RN  + +N   N++
Sbjct: 152  SQLDSFEARNFEKNANWENNVS 173