BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00019702
         (2655 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP10074.1| unnamed protein product [Coffea canephora]           1592   0.0  
ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I sub...  1267   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1263   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1246   0.0  
ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I sub...  1232   0.0  
ref|XP_009605274.1| PREDICTED: DNA-directed RNA polymerase I sub...  1230   0.0  
ref|XP_012834350.1| PREDICTED: DNA-directed RNA polymerase I sub...  1197   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1149   0.0  
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...  1144   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1141   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]  1118   0.0  
ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...  1068   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1051   0.0  
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...  1045   0.0  
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...  1045   0.0  
ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I sub...  1044   0.0  
gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]     1044   0.0  
ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I sub...  1043   0.0  
ref|XP_010105335.1| DNA-directed RNA polymerase I subunit rpa1 [...  1034   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1034   0.0  

>emb|CDP10074.1| unnamed protein product [Coffea canephora]
          Length = 1680

 Score = 1592 bits (4123), Expect = 0.0
 Identities = 797/885 (90%), Positives = 823/885 (92%), Gaps = 1/885 (0%)
 Frame = -2

Query: 2654 IMRDRRLDGF-SGGPXXXXXXXXXXXXXXSWKDDSQTAKTVSSTVSDGIDTPVAKKSPNQ 2478
            I+R  RLDGF SGG                W+DDSQT KT S TVSDGIDTPVAKKSPNQ
Sbjct: 230  IIRGHRLDGFRSGGSEERSSSEVVNANDSLWEDDSQTGKTASYTVSDGIDTPVAKKSPNQ 289

Query: 2477 LGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWENEAPLCSFICDLQQQQHSSAARVAGHS 2298
             G+V EE KKQKEAFS ++LPSEVRDVVKRLWENEAPLCSFICDLQ++QH+SAA +AG+S
Sbjct: 290  PGRVGEELKKQKEAFSEHLLPSEVRDVVKRLWENEAPLCSFICDLQREQHNSAAGIAGYS 349

Query: 2297 MFFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIALGNAYINDAERYRIVNRW 2118
            MFFLD ILVPPIKFRP+ARTGDAV+EHPHT LLSKVLQ NIALGNAYIN+AERY+IVNRW
Sbjct: 350  MFFLDSILVPPIKFRPLARTGDAVMEHPHTNLLSKVLQSNIALGNAYINNAERYKIVNRW 409

Query: 2117 MDLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDP 1938
            MDLQQSI+VLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDP
Sbjct: 410  MDLQQSISVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDP 469

Query: 1937 YLAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHPGAISYSDKVSTVKLPSS 1758
            YLAVNEIGVPPYFALRLTYPERVTPWNVGKLR AIVNGPEIHPGA+SY+DKVSTVKLPSS
Sbjct: 470  YLAVNEIGVPPYFALRLTYPERVTPWNVGKLRGAIVNGPEIHPGALSYTDKVSTVKLPSS 529

Query: 1757 KKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAH 1578
            KKMRIAISRKLPSSRGVV QLGKN+EHEFEGKVVYRHLQDGD+VLVNRQPTLHKPSIMAH
Sbjct: 530  KKMRIAISRKLPSSRGVVTQLGKNSEHEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAH 589

Query: 1577 VVHVLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTRG 1398
            VV VLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTRG
Sbjct: 590  VVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTRG 649

Query: 1397 DTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGNSWTSSNYSGKISIVDSE 1218
            DTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTG+S T SNYSGKISIVDSE
Sbjct: 650  DTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGSSCTFSNYSGKISIVDSE 709

Query: 1217 GVIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMKIPKQYFPIETYEVQQS 1038
            G+IQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMKIPKQYFP ETYEVQQS
Sbjct: 710  GIIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMKIPKQYFPTETYEVQQS 769

Query: 1037 ENDNKENDEKKADNCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSR 858
            END+KENDEKKADNCLLVWKNELVRGVIDKAQFGQFGLVHS+QELYGANTAGLLLSALSR
Sbjct: 770  ENDDKENDEKKADNCLLVWKNELVRGVIDKAQFGQFGLVHSIQELYGANTAGLLLSALSR 829

Query: 857  LFTMFLQMHGFTCGVEDLIILPHFDVQRKXXXXXXXXXXXVHCEFANFKRGQIGPLELQL 678
            LFTMFLQMHGFTCGVEDLIILPHFD++RK           VHCEF NFKRGQIGPLELQL
Sbjct: 830  LFTMFLQMHGFTCGVEDLIILPHFDLRRKEELEGEDVGEDVHCEFVNFKRGQIGPLELQL 889

Query: 677  EIEKVICRDREAATASLDMKMKNKLTKKASQISXXXXXXXXXKPFPKNCISLMTISGAKG 498
            EIEKVICRDREAATASLDMKMKNKLTKKASQIS         KPFPKNCISLMTISGAKG
Sbjct: 890  EIEKVICRDREAATASLDMKMKNKLTKKASQISKELLLKGLLKPFPKNCISLMTISGAKG 949

Query: 497  STVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEY 318
            STVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEY
Sbjct: 950  STVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEY 1009

Query: 317  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGV 138
            YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKV YDYTVRDADGSIVQFYYGEDGV
Sbjct: 1010 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIVQFYYGEDGV 1069

Query: 137  DVHRTSFLKNLKALALNQVPVHQKYEHEHDFNAYIVELPDELKRK 3
            DVHRTSFLKNL+ALALNQVPV QKYE E DFNAYIVELPD LKRK
Sbjct: 1070 DVHRTSFLKNLRALALNQVPVRQKYERERDFNAYIVELPDGLKRK 1114


>ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Sesamum
            indicum]
          Length = 1701

 Score = 1267 bits (3278), Expect = 0.0
 Identities = 632/888 (71%), Positives = 730/888 (82%), Gaps = 5/888 (0%)
 Frame = -2

Query: 2651 MRDRRLD-GFSGGPXXXXXXXXXXXXXXSWKDDSQTAKTVSSTVSDGIDTPVAKKSPNQL 2475
            +R  RLD   SGG               SWKDDS+TA+  S   +       +KK  NQ 
Sbjct: 241  IRRSRLDVAHSGGGEERPSSEVVNASDYSWKDDSETAEANSFIAASDTPKKSSKKGVNQA 300

Query: 2474 GKVAEEFKKQKEAFSGYILPSEVRDVVKRLWENEAPLCSFICDLQQQQHSSAARVAGHSM 2295
                +  ++    FSG +LPSEVRD+++RLWENEAPLCS++CD+QQQQ   +  VAG+SM
Sbjct: 301  RN--QGLEETNNYFSGPLLPSEVRDILRRLWENEAPLCSYMCDIQQQQCKLSGNVAGYSM 358

Query: 2294 FFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIALGNAYINDAERYRIVNRWM 2115
            FFL+ ILVPPIKFRP A+ GD+V+EHP T LL KVLQ NIALGNA++N+AER +I+NRWM
Sbjct: 359  FFLESILVPPIKFRPPAKGGDSVMEHPQTVLLGKVLQSNIALGNAHVNNAERSKIINRWM 418

Query: 2114 DLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPY 1935
            DLQ SINVL+DSKT   Q+QK G  GICQ LEKKEGIFRQKMMGKRVNFACRSVISPDPY
Sbjct: 419  DLQLSINVLFDSKTANSQAQKDGTSGICQFLEKKEGIFRQKMMGKRVNFACRSVISPDPY 478

Query: 1934 LAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHPGAISYSDKVSTVKLPSSK 1755
            LAVNEIG+PPYFALRLTYPERVTPWN GKLR A++NGPEIHPGA +Y D VSTVKLPSSK
Sbjct: 479  LAVNEIGIPPYFALRLTYPERVTPWNAGKLRGAVINGPEIHPGATTYVDSVSTVKLPSSK 538

Query: 1754 KMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 1575
            KMR+AISRKLPSSRG+V Q GK  E EFEGK VYRHLQDGDIVLVNRQPTLHKPSIMAHV
Sbjct: 539  KMRVAISRKLPSSRGLVSQSGKINELEFEGKFVYRHLQDGDIVLVNRQPTLHKPSIMAHV 598

Query: 1574 VHVLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTRGD 1395
            V VLKGEKTLRMHYANCSSYNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GD
Sbjct: 599  VRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGD 658

Query: 1394 TVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGNSWTSSNYSGKISIVDSEG 1215
            TVRGLIQDHI  AVLLT+K+TFLT  EF+QLLYGSGVF  G    +   S K+S+VDSEG
Sbjct: 659  TVRGLIQDHIVGAVLLTLKNTFLTRSEFSQLLYGSGVFAGGPGSLAGKQSRKVSLVDSEG 718

Query: 1214 VIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMKIPKQYFPIETYEVQQSE 1035
            +++ +LP++ KP+PLWTGKQVITALLN +T+GCAPC+++ + K+PK YF   +Y+     
Sbjct: 719  LVESVLPSIWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFTGSSYK----- 773

Query: 1034 NDNKENDEKKADNCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRL 855
             + +E++++ A++ LL+WKNELVRGVIDKAQFG+FGLVH++QELYG+N+AG+LLSALSRL
Sbjct: 774  -NGEEDEDQNAEHNLLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNSAGILLSALSRL 832

Query: 854  FTMFLQMHGFTCGVEDLIILPHFDVQRKXXXXXXXXXXXVHCEFANFKRGQIGPLELQLE 675
            FT+FLQ+HGFTCGV+DLIILPH+DVQRK           VHC+F  FK GQIG  ELQLE
Sbjct: 833  FTIFLQIHGFTCGVDDLIILPHYDVQRKEKLEGEDVGEEVHCDFVKFKPGQIGHEELQLE 892

Query: 674  IEKVICRDREAATASLDMKMKNK----LTKKASQISXXXXXXXXXKPFPKNCISLMTISG 507
            IEKVICRDRE+AT +LDMKMKNK    LT++ SQI          KPFPKNCIS+MT +G
Sbjct: 893  IEKVICRDRESATGALDMKMKNKLTNRLTREGSQILKHLLTAGLLKPFPKNCISVMTTTG 952

Query: 506  AKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRP 327
            AKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLPCFPPWDFT+RAGG+ITDRFL+GLRP
Sbjct: 953  AKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTARAGGFITDRFLTGLRP 1012

Query: 326  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGE 147
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKV YDYTVRDADGSI+QFYYGE
Sbjct: 1013 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 1072

Query: 146  DGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDFNAYIVELPDELKRK 3
            DGVDVH+TSFLKN KAL  NQ  + QKY +   F++YI +LP+ L+ +
Sbjct: 1073 DGVDVHQTSFLKNFKALEDNQETILQKYRNRRQFDSYIQKLPEGLEEE 1120


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 616/852 (72%), Positives = 721/852 (84%)
 Frame = -2

Query: 2558 DSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWE 2379
            +++T+  V+ST  DG++   A+K   Q G  ++  ++QK++FS   LPS+VR +++ LWE
Sbjct: 259  EAETSLCVTST--DGVENSKARK--RQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWE 314

Query: 2378 NEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLL 2199
            NEAPLC+F CD+Q Q H+++ +VAG SMFFLD ILVPPIKFRP A+ GD+++EHPHT LL
Sbjct: 315  NEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLL 374

Query: 2198 SKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLE 2019
             KV+Q NIALGNA+IN A R +I++R MDLQQS+NVL+DSKT +G  QK    GICQ+LE
Sbjct: 375  GKVVQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLE 434

Query: 2018 KKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRD 1839
            KKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIG+PPYFALRLTYPER+TPWN  K+RD
Sbjct: 435  KKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRD 494

Query: 1838 AIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKV 1659
            A++NGPE HPGA+S++D+++TVKLPS+KKMR+AISRKLPSSRG V Q G+N E+EFEGKV
Sbjct: 495  AVINGPENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKV 554

Query: 1658 VYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVH 1479
            VYRHLQDGD+VLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEMNVH
Sbjct: 555  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 614

Query: 1478 FPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLL 1299
            FPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHI  AV+LTMK+TFLT  EFNQLL
Sbjct: 615  FPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLL 674

Query: 1298 YGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKG 1119
            YGSGVF  G + TS N+S K+S+VD EGV+Q +LPAV KPKPLWTGKQVITALLN LTKG
Sbjct: 675  YGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKG 734

Query: 1118 CAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKKADNCLLVWKNELVRGVIDKAQF 939
            CAPC+++ + KIP  YF  E+  V+    +  E +++ A+N  L+WKNELVRGVIDKAQF
Sbjct: 735  CAPCTVKNKGKIPYPYFLSESRLVEYQSRE--EQEDRTAENEFLIWKNELVRGVIDKAQF 792

Query: 938  GQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQRKXXXX 759
            G+FGLVH++QELYG+N AG+LLSALSRLFT+FLQ+HGFTCGV+DL+ILPH+D++RK    
Sbjct: 793  GKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELE 852

Query: 758  XXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQIS 579
                    HC+F  FKRG+IGPLELQLEIEK +  ++EAATA+LDMKMKNKL  K SQ +
Sbjct: 853  GDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFN 912

Query: 578  XXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 399
                     KPFP+NCI+LMTI+GAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC
Sbjct: 913  KELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 972

Query: 398  FPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 219
            FPPWD  SRAGGY++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE
Sbjct: 973  FPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1032

Query: 218  SLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDFNA 39
            SLKV YDYTVRDADGSI+QFYYGEDGVDVHRTSFLKN KAL  NQ  + QK  H    N+
Sbjct: 1033 SLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNS 1092

Query: 38   YIVELPDELKRK 3
            YI +LPD L+ K
Sbjct: 1093 YIEKLPDGLEEK 1104


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Solanum
            lycopersicum]
          Length = 1677

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 609/852 (71%), Positives = 713/852 (83%)
 Frame = -2

Query: 2558 DSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWE 2379
            +++T+  V+ST  DG++    +K   Q G  ++  ++QK++FS   LPS+VR +++ LWE
Sbjct: 259  EAETSLCVTST--DGVENSKGRK--RQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWE 314

Query: 2378 NEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLL 2199
            NEAPLC+F CD+Q Q  +++ +VAG SMFFLD ILVPP+KFRP A+ GD+++EHPHT LL
Sbjct: 315  NEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLL 374

Query: 2198 SKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLE 2019
             KV+Q NIALGNA+IN A R +I++R MDLQQS+NVL+DSKT +G  QK    GICQ+LE
Sbjct: 375  GKVIQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLE 434

Query: 2018 KKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRD 1839
            KKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIG+PPYFA RLTYPER+TPWN  K+RD
Sbjct: 435  KKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRD 494

Query: 1838 AIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKV 1659
            A++NGPE HPGAIS++D+++TVKLPS+KKMR+AISRKLPSSRG V Q G+N E+EFEGKV
Sbjct: 495  AVINGPENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKV 554

Query: 1658 VYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVH 1479
            VYRHLQDGD+VLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEMNVH
Sbjct: 555  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 614

Query: 1478 FPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLL 1299
            FPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHI  AV+LTMK+TFL+  EFNQLL
Sbjct: 615  FPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLL 674

Query: 1298 YGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKG 1119
            YGSGVF  G + TS N+S K+SIVD EGV+Q +LPAV KPKPLWTGKQVITALLN LT G
Sbjct: 675  YGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNG 734

Query: 1118 CAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKKADNCLLVWKNELVRGVIDKAQF 939
            C PC+++ + KIP  YF  E+  V+    +  E +++ A+N  L+WKNELVRGVIDKAQF
Sbjct: 735  CPPCTVKNKGKIPYAYFLSESRLVEYQSRE--EQEDRTAENEFLIWKNELVRGVIDKAQF 792

Query: 938  GQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQRKXXXX 759
            G+FGLVH++QELYG+N AG+LLSALSRLFT+FLQ+HGFTCG++DL+ILPH+D++RK    
Sbjct: 793  GKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELE 852

Query: 758  XXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQIS 579
                    HC+F  FKRG+IGPLELQLEIEK I  ++E ATA+LDMKMKNKL  K SQ +
Sbjct: 853  GDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFN 912

Query: 578  XXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 399
                     KPFP+NCI+LMTI+GAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC
Sbjct: 913  KELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 972

Query: 398  FPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 219
            FP WD  SRAGGY++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE
Sbjct: 973  FPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1032

Query: 218  SLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDFNA 39
            SLKV YDYTVRDADGSI+QFYYGEDGVDVHRTSFLKN KAL  NQ  + QK  H    N+
Sbjct: 1033 SLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNS 1092

Query: 38   YIVELPDELKRK 3
            YI +LPD L  K
Sbjct: 1093 YIEKLPDGLGEK 1104


>ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
            sylvestris]
          Length = 1681

 Score = 1232 bits (3187), Expect = 0.0
 Identities = 613/854 (71%), Positives = 705/854 (82%), Gaps = 8/854 (0%)
 Frame = -2

Query: 2540 TVSSTVSDGIDTPVAKKSPNQLGKVAEE---FKKQKEAFSGYILPSEVRDVVKRLWENEA 2370
            ++S   SD ++  +A+      G+  +E     +QK+ FS   LPS+VR +++ LWENEA
Sbjct: 265  SLSMASSDRLENSMAR------GRQGDEEYIVMQQKDLFSVAHLPSQVRKIIEHLWENEA 318

Query: 2369 PLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKV 2190
             LC+F C++Q Q  ++ ++VAG SMFFLD ILVPPI+FRP A+ GD+V+EHPHT LL KV
Sbjct: 319  RLCAFFCNIQGQHLNTPSKVAGPSMFFLDSILVPPIRFRPPAKGGDSVMEHPHTVLLGKV 378

Query: 2189 LQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKE 2010
            LQ NIALGNA+ N A R +I++R MDLQQS+N+L+DSKT  G  QK   VGICQLLEKKE
Sbjct: 379  LQSNIALGNAHSNRAGRSKIISRLMDLQQSVNILFDSKTAAGPGQKDVGVGICQLLEKKE 438

Query: 2009 GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIV 1830
            GIFRQKMMGKRVNFACRSVISPDPYL+VNEIGVPPYFALRLTYPERVTPWN GK+RD+I+
Sbjct: 439  GIFRQKMMGKRVNFACRSVISPDPYLSVNEIGVPPYFALRLTYPERVTPWNAGKMRDSII 498

Query: 1829 NGPEIHPGAISYSDKVSTVKLPSS-----KKMRIAISRKLPSSRGVVMQLGKNTEHEFEG 1665
            NGPE HPGA+S++D++STVKLPS      KK+R+AISRKLPSSRG V Q G+N E+EFEG
Sbjct: 499  NGPENHPGALSFADRISTVKLPSGNGKNIKKIRMAISRKLPSSRGAVTQSGRNDEYEFEG 558

Query: 1664 KVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMN 1485
            KVVYRHLQDGDIVLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEMN
Sbjct: 559  KVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 618

Query: 1484 VHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQ 1305
            VHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHI  AVLLTMK+TFLT  EFNQ
Sbjct: 619  VHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLQEFNQ 678

Query: 1304 LLYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLT 1125
            LLYGSGVF  G   TS N+S K+S+VDSEGV+Q ILPAV KPKPLWTGKQVITALLN LT
Sbjct: 679  LLYGSGVFAAGPGSTSGNHSNKVSVVDSEGVVQTILPAVWKPKPLWTGKQVITALLNHLT 738

Query: 1124 KGCAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKKADNCLLVWKNELVRGVIDKA 945
            KG  PC+++ + KIP  YF  ++   +    +  E +++ A+N  L+WKNELVRGVIDKA
Sbjct: 739  KGSPPCTVKNKGKIPYPYFLSQSRLAEYQSRE--EEEDRTAENKFLIWKNELVRGVIDKA 796

Query: 944  QFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQRKXX 765
            QFG+FGLVH++QELYGAN AG+LLSALSRLFT+FLQ+HGFTCG++DL+ILPH+D++RK  
Sbjct: 797  QFGKFGLVHTIQELYGANRAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEE 856

Query: 764  XXXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQ 585
                      HC+F  FK G+IGPLELQLEIEK I  ++EAATA+LDMKMKNKL  K SQ
Sbjct: 857  LEGGDVGEDAHCDFVKFKPGEIGPLELQLEIEKAISGNKEAATAALDMKMKNKLANKGSQ 916

Query: 584  ISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTL 405
             +         KPFP+NCI+LMTI+GAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTL
Sbjct: 917  FNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTL 976

Query: 404  PCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 225
            PCFPPWDF SRAGGY++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN
Sbjct: 977  PCFPPWDFASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1036

Query: 224  LESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDF 45
            LESLKV YDYTVRDADGSI+QFYYGEDGVDVHRTSFLKN KAL  NQ  + QK       
Sbjct: 1037 LESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKDNQETICQKLRQGRKL 1096

Query: 44   NAYIVELPDELKRK 3
            N+YI  LPD L+ K
Sbjct: 1097 NSYIERLPDGLEEK 1110


>ref|XP_009605274.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
            tomentosiformis]
          Length = 1938

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 609/821 (74%), Positives = 691/821 (84%), Gaps = 5/821 (0%)
 Frame = -2

Query: 2450 KQKEAFSGYILPSEVRDVVKRLWENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILV 2271
            +QK+ FS   LPS+VR +++ LWENEA LC+F C++Q Q  ++  +VAG SMFFL+ ILV
Sbjct: 549  QQKDLFSVAHLPSQVRKIIEHLWENEARLCAFFCNIQGQHLNTPIKVAGPSMFFLESILV 608

Query: 2270 PPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINV 2091
            PPI+FRP A+ GD+V+EHPHT LL KVLQ NIALGNA+ N A R +I++R MDLQQS+NV
Sbjct: 609  PPIRFRPPAKGGDSVMEHPHTVLLGKVLQSNIALGNAHSNQAGRSKIISRLMDLQQSVNV 668

Query: 2090 LYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGV 1911
            L+DSKT  G  QK   VGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIGV
Sbjct: 669  LFDSKTAAGPGQKDVGVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGV 728

Query: 1910 PPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHPGAISYSDKVSTVKLPSS-----KKMR 1746
            PPYFALRLTYPERVTPWN GK+RDAI+NGPE HPGA+S++D++STVKLPS      KK+R
Sbjct: 729  PPYFALRLTYPERVTPWNAGKMRDAIINGPENHPGALSFADRISTVKLPSGNGTNIKKIR 788

Query: 1745 IAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHV 1566
            +AISRKLPSSRG V Q G+N E+EFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVV V
Sbjct: 789  MAISRKLPSSRGAVTQSGRNDEYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 848

Query: 1565 LKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 1386
            LKGEKTLRMHYANCS+YNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVR
Sbjct: 849  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVR 908

Query: 1385 GLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQ 1206
            GLIQDHI  AVLLTMK+TFLT  EFNQLLYGSGVF  G   TS N+S K+S+VDSEGV+Q
Sbjct: 909  GLIQDHIVGAVLLTMKNTFLTLQEFNQLLYGSGVFAAGPGSTSGNHSNKVSVVDSEGVVQ 968

Query: 1205 PILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMKIPKQYFPIETYEVQQSENDN 1026
             ILPAV KPKPLWTGKQVITALLN LTKG  PC+++ + KIP  YF +    + + ++  
Sbjct: 969  TILPAVWKPKPLWTGKQVITALLNHLTKGSPPCTVKNKGKIPYPYF-LSLSRLAEYQSRE 1027

Query: 1025 KENDEKKADNCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTM 846
            +E D + A+N  L+WKNELVRGVIDKAQFG+FGLVH++QELYGAN AG+LLSALSRLFT+
Sbjct: 1028 EEED-RTAENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANKAGILLSALSRLFTI 1086

Query: 845  FLQMHGFTCGVEDLIILPHFDVQRKXXXXXXXXXXXVHCEFANFKRGQIGPLELQLEIEK 666
            FLQ+HGFTCG++DL+ILPH+D++RK            HC+F  FK G+IGPLELQLEIEK
Sbjct: 1087 FLQLHGFTCGIDDLVILPHYDIRRKEELEGGDVGEEAHCDFVKFKPGEIGPLELQLEIEK 1146

Query: 665  VICRDREAATASLDMKMKNKLTKKASQISXXXXXXXXXKPFPKNCISLMTISGAKGSTVN 486
             I  ++EAATA+LDMKMKNKL  K SQ +         KPFP+NCI+LMTI+GAKGSTVN
Sbjct: 1147 AISSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVN 1206

Query: 485  FQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHC 306
            FQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDF SRAGGY++DRFLSGLRPQEYYFHC
Sbjct: 1207 FQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFASRAGGYVSDRFLSGLRPQEYYFHC 1266

Query: 305  MAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHR 126
            MAGREGLVDTAVKTSRSGYLQRCLIKNLESLKV YDYTVRDADGSI+QFYYGEDGVDVHR
Sbjct: 1267 MAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHR 1326

Query: 125  TSFLKNLKALALNQVPVHQKYEHEHDFNAYIVELPDELKRK 3
            TSFLKN KAL  NQ  + QK       N+YI  LPD L+ K
Sbjct: 1327 TSFLKNFKALKDNQETICQKLRQGRKLNSYIERLPDGLEEK 1367


>ref|XP_012834350.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Erythranthe
            guttatus] gi|604336035|gb|EYU39881.1| hypothetical
            protein MIMGU_mgv1a000122mg [Erythranthe guttata]
          Length = 1719

 Score = 1197 bits (3096), Expect = 0.0
 Identities = 597/857 (69%), Positives = 698/857 (81%), Gaps = 4/857 (0%)
 Frame = -2

Query: 2561 DDSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLW 2382
            DDS+T ++ S   +        KK  N+  K+           SG +LPS+VRD++K LW
Sbjct: 278  DDSETVESNSFIATSNSTKKSKKKGVNRAKKLNPGSGDPNFYLSGPLLPSQVRDILKLLW 337

Query: 2381 ENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYL 2202
            E EA  CS+I D+Q+Q+        G+SMFFL+ +LVPPI+FRP A+ GD+V+EHP T L
Sbjct: 338  EKEASFCSYISDIQRQKCKPFGNKTGYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVL 397

Query: 2201 LSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLL 2022
            L KVLQ NIALGNA++N AE+ +I++RWM+LQQSINV +DSKT T  +QK    GICQ L
Sbjct: 398  LGKVLQSNIALGNAHVN-AEKSKIISRWMELQQSINVYFDSKTATSLAQKDSIAGICQFL 456

Query: 2021 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLR 1842
            EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFAL+LTYPERVTPWN  KLR
Sbjct: 457  EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLR 516

Query: 1841 DAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGK 1662
             A+VNGP+IHPGA +Y D V+ VKLP S+KMR+AISRKLPSSRGVV Q GK  + EFEGK
Sbjct: 517  GAVVNGPDIHPGATTYVDSVTIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFEGK 576

Query: 1661 VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNV 1482
             V+RHLQDGDIVLVNRQPTLHKPSIMAHVV VL GE+TLRMHYANCSSYNADFDGDE+NV
Sbjct: 577  TVHRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINV 636

Query: 1481 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQL 1302
            HFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHI  AVLLTMK+TF+   EFNQL
Sbjct: 637  HFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQL 696

Query: 1301 LYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTK 1122
            LYGSGVF +G      N S K++++D+EGV++ +LPA+ KP+PLWTGKQVITALLN +T+
Sbjct: 697  LYGSGVFASGPGSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITR 756

Query: 1121 GCAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKKADNCLLVWKNELVRGVIDKAQ 942
            GCAP ++E + KIPK YF   +Y         +E++++ A++ LLVWKNELVRGVIDKAQ
Sbjct: 757  GCAPFTVENQGKIPKNYFFGNSY------TRGEEDEDQNAEHNLLVWKNELVRGVIDKAQ 810

Query: 941  FGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQRKXXX 762
            FG+FGLVH+VQELYGA++AG+ LSALSR+FT+FLQ+HGFTCGV+DLIILP +D QRK   
Sbjct: 811  FGKFGLVHTVQELYGASSAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKL 870

Query: 761  XXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKN----KLTKK 594
                    VHC+F  FK GQIGP ELQLEIEKVIC DRE+ATASLDMKMKN    KLT++
Sbjct: 871  EGEDVGEVVHCDFVKFKPGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKLTRE 930

Query: 593  ASQISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 414
             SQI          KPFPKNCIS+MT +GAKGSTVNFQQIS+YLGQQELEGKRVPRMVSG
Sbjct: 931  GSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSG 990

Query: 413  KTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 234
            KTLP FPPWDFTSRAGG+ITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL
Sbjct: 991  KTLPSFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1050

Query: 233  IKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHE 54
            +KNLESLKV YDYTVRDADGSIVQFYYGEDG+DVHRTSFL N KAL  N+  + QK++H+
Sbjct: 1051 VKNLESLKVCYDYTVRDADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQHK 1110

Query: 53   HDFNAYIVELPDELKRK 3
             +FN+YI +LP+ L+ +
Sbjct: 1111 REFNSYIKKLPEGLEEE 1127


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1149 bits (2972), Expect = 0.0
 Identities = 582/846 (68%), Positives = 676/846 (79%), Gaps = 6/846 (0%)
 Frame = -2

Query: 2522 SDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSG--YILPSEVRDVVKRLWENEAPLCSFIC 2349
            S+   + ++  SP   GK      K      G  ++LPSEVR++V +LWENE  LCSFIC
Sbjct: 235  SEASSSIISADSPGNSGKKGSSSNKLNLGLVGQRHLLPSEVREMVMQLWENEESLCSFIC 294

Query: 2348 DLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIAL 2169
            D+QQQQ   +     +S+FF + ILV PIKFR   R G++V+EHPHT LL KVL+ NIAL
Sbjct: 295  DIQQQQGKLSGNRMDYSIFFFETILVNPIKFRAPTRGGNSVMEHPHTVLLGKVLESNIAL 354

Query: 2168 GNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKM 1989
             NA     +  + ++ WM+LQQSINVL+D K++T  S+KAG  GICQLLEKKEG+FRQKM
Sbjct: 355  RNA-----QPSKFISHWMELQQSINVLFDGKSST--SKKAGVSGICQLLEKKEGVFRQKM 407

Query: 1988 MGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHP 1809
            MGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN  KLR+A+VNGP+IHP
Sbjct: 408  MGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHP 467

Query: 1808 GAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDI 1629
            GA +Y D V+T+KLP +KK R+A+SRKLPSSRG   ++G++ + +FEGKVVYRHLQDGDI
Sbjct: 468  GATTYIDSVATMKLPLNKKARVALSRKLPSSRGATAEVGES-QLDFEGKVVYRHLQDGDI 526

Query: 1628 VLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAE 1449
            VLVNRQPTLHKPSIMAHVV VLKGE+TLRMHYANCSSYNADFDGDE+NVHFPQDEISRAE
Sbjct: 527  VLVNRQPTLHKPSIMAHVVRVLKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAE 586

Query: 1448 AYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGN 1269
            AYNIVNANEQYIVPTRGDTVRGLIQDHI +AVLLT+K TFLT  EFNQLLYGSGVF  G 
Sbjct: 587  AYNIVNANEQYIVPTRGDTVRGLIQDHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGR 646

Query: 1268 SWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEM 1089
                SN S K+S    +G+I PILPA+ KP+PLWTGKQVI+ALLN +T+G APC ++ + 
Sbjct: 647  HSYVSNSSQKVSGHAPDGLINPILPAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQT 706

Query: 1088 KIPKQYFPIETYEVQQSENDNKENDEKKADNCLLVWKNELVRGVIDKAQFGQFGLVHSVQ 909
            K+P  YF        + E+ N EN+        LVWKNELVRGVIDKAQFG+FGLVH+VQ
Sbjct: 707  KLPSTYFTDNPAMEDEDEDQNAENN-------FLVWKNELVRGVIDKAQFGKFGLVHTVQ 759

Query: 908  ELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQRKXXXXXXXXXXXVHC 729
            ELYG+ +AG LL+A SRLFTMFLQ+HGFTCGV+DL+ILP +DV+RK           VHC
Sbjct: 760  ELYGSESAGNLLTAFSRLFTMFLQIHGFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHC 819

Query: 728  EFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKK----ASQISXXXXXX 561
            +F NFK GQIG  ELQLEIEK ICRDRE+ATA LDMKMKNKLT K     SQ+       
Sbjct: 820  DFINFKPGQIGREELQLEIEKAICRDRESATALLDMKMKNKLTMKLTTEGSQVLKHLLTD 879

Query: 560  XXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDF 381
               KPFP+NCIS+MT +GAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP FPPWDF
Sbjct: 880  GLLKPFPQNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDF 939

Query: 380  TSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSY 201
             SRAGG+ITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV Y
Sbjct: 940  ASRAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGY 999

Query: 200  DYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDFNAYIVELP 21
            DYTVRDADGSI+QF YGEDGVD H+TSFLKN KAL+ NQ  + QK++++H FN YI +LP
Sbjct: 1000 DYTVRDADGSIIQFCYGEDGVDAHKTSFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLP 1059

Query: 20   DELKRK 3
            + L+ +
Sbjct: 1060 EGLEEE 1065


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score = 1144 bits (2960), Expect = 0.0
 Identities = 574/865 (66%), Positives = 691/865 (79%), Gaps = 10/865 (1%)
 Frame = -2

Query: 2567 WKDDSQTAKTVSSTV-SDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVK 2391
            W D   T +T SS   +DGI   V K+   +  +   EF KQK  FSG +LPSEVRD+++
Sbjct: 266  WGDGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIME 325

Query: 2390 RLWENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPH 2211
            RLWENEA LCSFI D+ Q++  ++   AG+SMFFL+ ILVPPIKFRP ++   +V+EHP 
Sbjct: 326  RLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQ 385

Query: 2210 TYLLSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGIC 2031
            T LL KVLQ NIALGNA+ N++ER +I++RWMDLQQSINVL+D KT  GQ Q+    GIC
Sbjct: 386  TVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGIC 445

Query: 2030 QLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVG 1851
            QLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPE+VTPWNV 
Sbjct: 446  QLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVV 505

Query: 1850 KLRDAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEF 1671
            KLRDAI+NGPEIHPGA  Y DK+STVKL  +KKMRI+ISRKLPSSRGVV Q G+++++EF
Sbjct: 506  KLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEF 565

Query: 1670 EGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDE 1491
            EGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDE
Sbjct: 566  EGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 625

Query: 1490 MNVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEF 1311
            MNVHFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLIQDHI SAVLLT KDTFLT +++
Sbjct: 626  MNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQY 685

Query: 1310 NQLLYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQ 1131
            NQLLY SG+ ++G+         K+S++DSE  +QP+LPA+ KP+PLW+GKQVITA+LN 
Sbjct: 686  NQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNH 744

Query: 1130 LTKGCAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKK--------ADNCLLVWKN 975
            +T+G  P + EK+ KIP++YF  E  E +  +  +  +D +K         +  LL+ KN
Sbjct: 745  ITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKN 804

Query: 974  ELVRGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIIL 795
            ELVRGVIDKAQF ++GLVH VQELYG+NTAG+LLS LSRLFT+FLQMHGFTCGV+DL+I 
Sbjct: 805  ELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIS 864

Query: 794  PHFDVQRK-XXXXXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMK 618
            P++D+ RK            VHC+F     G+I P++LQ+E+EK+I  + EAA   LD  
Sbjct: 865  PNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRM 924

Query: 617  MKNKLTKKASQISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGK 438
            MKN+L +  S+++         KPFPKNC+SLMT +GAKGSTVNF QISS+LGQQ+LEGK
Sbjct: 925  MKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGK 984

Query: 437  RVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSR 258
            RVPRMVSGKTLPCFPPWD  +RAGG+I+DRFL+GL PQEYYFHCMAGREGLVDTAVKTSR
Sbjct: 985  RVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSR 1044

Query: 257  SGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVP 78
            SGYLQRCLIKNLE LKV YDYTVRD+DGSIVQF YG+DGVDVH+TSF+   +ALA+N+  
Sbjct: 1045 SGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEV 1104

Query: 77   VHQKYEHEHDFNAYIVELPDELKRK 3
            V +K+  +  FN YI +LP EL++K
Sbjct: 1105 VCEKFGQDGKFNGYIQKLPKELRKK 1129


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1141 bits (2952), Expect = 0.0
 Identities = 571/862 (66%), Positives = 690/862 (80%), Gaps = 9/862 (1%)
 Frame = -2

Query: 2561 DDSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLW 2382
            D  +T  +++ T  DGI   V K+   +  +   EF KQK  FSG +LPSEVRD+++RLW
Sbjct: 249  DTDETHSSIAPT--DGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLW 306

Query: 2381 ENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYL 2202
            ENEA LCSFI D+ Q++  ++   AG+SMFFL+ ILVPPIKFRP ++   +V+EHP T L
Sbjct: 307  ENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVL 366

Query: 2201 LSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLL 2022
            L KVLQ NIALGNA+ N++ER +I++RWMDLQQSINVL+D KT  GQ Q+    GICQLL
Sbjct: 367  LGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLL 426

Query: 2021 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLR 1842
            EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPE+VTPWNV KLR
Sbjct: 427  EKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLR 486

Query: 1841 DAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGK 1662
            DAI+NGPEIHPGA  Y DK+STVKL  +KKMRI+ISRKLPSSRGVV Q G+++++EFEGK
Sbjct: 487  DAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGK 546

Query: 1661 VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNV 1482
            +VYRHLQDGDIVLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEMNV
Sbjct: 547  IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 606

Query: 1481 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQL 1302
            HFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLIQDHI SAVLLT KDTFLT +++NQL
Sbjct: 607  HFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQL 666

Query: 1301 LYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTK 1122
            LY SG+ ++G+         K+S++DSE  +QP+LPA+ KP+PLW+GKQVITA+LN +T+
Sbjct: 667  LYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITR 725

Query: 1121 GCAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKK--------ADNCLLVWKNELV 966
            G  P + EK+ KIP++YF  E  E +  +  +  +D +K         +  LL+ KNELV
Sbjct: 726  GRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELV 785

Query: 965  RGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHF 786
            RGVIDKAQF ++GLVH VQELYG+NTAG+LLS LSRLFT+FLQMHGFTCGV+DL+I P++
Sbjct: 786  RGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNY 845

Query: 785  DVQRK-XXXXXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKN 609
            D+ RK            VHC+F     G+I P++LQ+E+EK+I  + EAA   LD  MKN
Sbjct: 846  DIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKN 905

Query: 608  KLTKKASQISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVP 429
            +L +  S+++         KPFPKNC+SLMT +GAKGSTVNF QISS+LGQQ+LEGKRVP
Sbjct: 906  ELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVP 965

Query: 428  RMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 249
            RMVSGKTLPCFPPWD  +RAGG+I+DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 966  RMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGY 1025

Query: 248  LQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQ 69
            LQRCLIKNLE LKV YDYTVRD+DGSIVQF YG+DGVDVH+TSF+   +ALA+N+  V +
Sbjct: 1026 LQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCE 1085

Query: 68   KYEHEHDFNAYIVELPDELKRK 3
            K+  +  FN YI +LP EL++K
Sbjct: 1086 KFGQDGKFNGYIQKLPKELRKK 1107


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score = 1118 bits (2892), Expect = 0.0
 Identities = 575/911 (63%), Positives = 690/911 (75%), Gaps = 56/911 (6%)
 Frame = -2

Query: 2567 WKDDSQTAKTVSSTV-SDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEV----- 2406
            W D   T +T SS   +DGI   V K    +  +   EF KQK  FSG +LPSEV     
Sbjct: 335  WGDGVDTDETHSSIAPTDGIQDTVTKXLERKGAQAPIEFIKQKSFFSGPLLPSEVCFLXA 394

Query: 2405 -----------------------RDVVKRLWENEAPLCSFICDLQQQQHSSAARVAGHSM 2295
                                   RD+++RLWENEA LCSFI D+ Q++  ++   AG+SM
Sbjct: 395  LEHHHQLPWLMSVVVVNYVVTKVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSM 454

Query: 2294 FFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIALGNAYINDAERYRIVNRWM 2115
            FFL+ ILVPPIKFRP ++   +V+EHP T LL KVLQ NIALGNA+ N++ER +I++RWM
Sbjct: 455  FFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 514

Query: 2114 DLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPY 1935
            DLQQSINVL+D KT  GQ Q+    GICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPY
Sbjct: 515  DLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPY 574

Query: 1934 LAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHPGAISYSDKVSTVKLPSSK 1755
            LAVNEIG+PPYFALRLTYPE+VTPWNV KLRDAI+NGPEIHPGA  Y DK+STVKL  +K
Sbjct: 575  LAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNK 634

Query: 1754 KMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 1575
            KMRI+ISRKLPSSRGVV Q G+++++EFEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHV
Sbjct: 635  KMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 694

Query: 1574 VHVLKGEKTLRMHYANC------------------SSYNADFDGDEMNVHFPQDEISRAE 1449
            V VLKGEKTLRMHYANC                  S+YNADFDGDEMNVHFPQDEISRAE
Sbjct: 695  VRVLKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRAE 754

Query: 1448 AYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGN 1269
            AYNIVNAN QYIVP+RGD +RGLIQDHI SAVLLT KDTFLT +++NQLLY SG+ ++G+
Sbjct: 755  AYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGS 813

Query: 1268 SWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEM 1089
                     K+S++DSE  +QP+LPA+ KP+PLW+GKQVITA+LN +T+G  P + EK+ 
Sbjct: 814  GSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDG 873

Query: 1088 KIPKQYFPIETYEVQQSENDNKENDEKK--------ADNCLLVWKNELVRGVIDKAQFGQ 933
            KIP++YF  E  E +  +  +  +D +K         +  LL+ KNELVRGVIDKAQF +
Sbjct: 874  KIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDK 933

Query: 932  FGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQRK-XXXXX 756
            +GLVH VQELYG+NTAG+LLS LSRLFT+FLQMHGFTCGV+DL+I P++D+ RK      
Sbjct: 934  YGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKS 993

Query: 755  XXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQISX 576
                  VHC+F     G+I P++LQ+E+EK+I  + EAA   LD  MKN+L +  S+++ 
Sbjct: 994  ENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNK 1053

Query: 575  XXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCF 396
                    KPFPKNC+SLMT +GAKGSTVNF QISS+LGQQ+LEGKRVPRMVSGKTLPCF
Sbjct: 1054 DLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCF 1113

Query: 395  PPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLES 216
            PPWD  +RAGG+I+DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 
Sbjct: 1114 PPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1173

Query: 215  LKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDFNAY 36
            LKV YDYTVRD+DGSIVQF YG+DGVDVH+TSF+   +ALA+NQ  V +K+  +  FN Y
Sbjct: 1174 LKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNQEVVCEKFGQDGKFNGY 1233

Query: 35   IVELPDELKRK 3
            I +LP EL++K
Sbjct: 1234 IQKLPKELRKK 1244


>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score = 1068 bits (2761), Expect = 0.0
 Identities = 542/859 (63%), Positives = 652/859 (75%), Gaps = 6/859 (0%)
 Frame = -2

Query: 2561 DDSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLW 2382
            DD+   ++ S  VSDG    V +        +  +F  Q++  SG +LP EV++ ++ LW
Sbjct: 282  DDADILES-SGAVSDGTLEFVTETDKKIGEHIPPDFFSQRKFLSGPLLPPEVKETMRLLW 340

Query: 2381 ENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYL 2202
            +NEA LCS ICD+Q ++   +   A HSMFF + +LVPPIKFRP A++GD+V+EHP T L
Sbjct: 341  KNEARLCSLICDIQHERLHVSGMNARHSMFFTEALLVPPIKFRPPAKSGDSVMEHPQTVL 400

Query: 2201 LSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLL 2022
            L KVLQ NIALGNA+ N ++R +I+ RWMDLQQ++N+LYDSKT+  +   A   GICQLL
Sbjct: 401  LGKVLQSNIALGNAHANSSDRSKIIPRWMDLQQTVNILYDSKTSGQRDNTA--TGICQLL 458

Query: 2021 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLR 1842
            EKKEGIFRQKMMGKRVN+ACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWNV KLR
Sbjct: 459  EKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLR 518

Query: 1841 DAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGK 1662
            DAI+NG E HPGA  Y DK++TVKLP S+KMR++ISRKLPSSRG V Q GKN E+EFEGK
Sbjct: 519  DAIINGAEHHPGATHYVDKLATVKLPPSRKMRMSISRKLPSSRGAVTQPGKNLEYEFEGK 578

Query: 1661 VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNV 1482
            VVYRHLQDGDIVLVNRQPTLHKPSIMAHVV VLKGEKT+RMHYANCS+YNADFDGDEMNV
Sbjct: 579  VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNV 638

Query: 1481 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQL 1302
            HFPQDEISRAEA+NIVNAN+QY+VPT G  +RGLIQDHI SAVLLT +DTFLT DEF+QL
Sbjct: 639  HFPQDEISRAEAFNIVNANKQYVVPTSGQPIRGLIQDHIISAVLLTKRDTFLTRDEFSQL 698

Query: 1301 LYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTK 1122
            LY SGV  T   +       KIS ++SE  ++P+LPA+ KP+PLWTGKQVITA+LN +T+
Sbjct: 699  LYSSGVSATALGYFVGKPGQKISTINSEEELEPVLPAIWKPEPLWTGKQVITAVLNHITR 758

Query: 1121 GCAPCSIEKEMKIPKQYFPIETYEVQQSENDNKENDEKKADNCLLVWKNELVRGVIDKAQ 942
            G  P S+ K  K P++YF   + E +                 LL+ KNELV GVIDKAQ
Sbjct: 759  GRTPFSVRKAGKTPEEYFGKTSGEYE-----------------LLIHKNELVHGVIDKAQ 801

Query: 941  FGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQR-KXX 765
            FG +GLVH+VQELYG+N AG+LLS LSRLFT+FLQMHGFTCG++DL+I+  +D++R K  
Sbjct: 802  FGGYGLVHTVQELYGSNAAGVLLSVLSRLFTIFLQMHGFTCGIDDLLIVHRYDLERMKKL 861

Query: 764  XXXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQ 585
                      H +F     G   P++LQ+EIEK I R+ ++A   LD +M   + K  S+
Sbjct: 862  DKNEQIGEFEHWQFVGCADGDKDPIKLQVEIEKAIRRNGDSAVTRLDRRMSGAMNKLTSE 921

Query: 584  ISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTL 405
            ++         KPFPKNC+SLMT +GAKG  VN  QI S LGQQELEGKRVPRMVSGKTL
Sbjct: 922  VNKNLFPEGLCKPFPKNCLSLMTATGAKGGMVNSTQICSLLGQQELEGKRVPRMVSGKTL 981

Query: 404  PCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 225
            PCFPPWD  SRAGG+I+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KN
Sbjct: 982  PCFPPWDPASRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKN 1041

Query: 224  LESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHEHDF 45
            LE LKV YDYTVRDADGS+VQF YGEDG+DVH+TSFL+  +ALA N   V +++ ++ D 
Sbjct: 1042 LEGLKVCYDYTVRDADGSVVQFIYGEDGIDVHKTSFLEEFEALAANHRIVQERFNNQLDS 1101

Query: 44   NA-----YIVELPDELKRK 3
                   YI +LP  L+ K
Sbjct: 1102 EVLFKYDYIKKLPVALEGK 1120


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1051 bits (2717), Expect = 0.0
 Identities = 546/841 (64%), Positives = 647/841 (76%), Gaps = 10/841 (1%)
 Frame = -2

Query: 2495 KKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWENEAPLCSFICDLQQQQHSSAA 2316
            KK   +  K   EF +QK  FS  +LPSEV++ ++ LW+NEA +CSFI DLQQQ+     
Sbjct: 271  KKHKKKERKEVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFGK-- 328

Query: 2315 RVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIALGNAYINDAERY 2136
            R AG +MFFL+ ILVPPIKFRP  + GD+V+EHP T LLSKVLQ NI+LG+A+IN  E  
Sbjct: 329  RKAGPAMFFLETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINK-EHS 387

Query: 2135 RIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMMGKRVNFACRS 1956
            +IV RW+DLQQSIN L+DSKT  G  Q+ G  GICQLLEKKEG+FRQKMMGKRVN+ACRS
Sbjct: 388  KIVRRWLDLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRS 447

Query: 1955 VISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHPGAISYSDKVST 1776
            VISPDPY+ VNEIG+PP FA++LTYPERVTPWN+ KLR+A++NG E HPGA  Y DK+S 
Sbjct: 448  VISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSI 507

Query: 1775 VKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDIVLVNRQPTLHK 1596
             KLP ++K RI+ISRKLPSSRG V Q GK +E EFEGK+VYRHLQDGD+VLVNRQPTLHK
Sbjct: 508  NKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHK 567

Query: 1595 PSIMAHVVHVLKGEKTLRMHYANCS-SYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQ 1419
            PSIMAHVV VLKGEKTLRMHYANCS +YNADFDGDEMNVHFPQDE+SRAEAYNIVNAN Q
Sbjct: 568  PSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 627

Query: 1418 YIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGNSWTSSNYSGK 1239
            ++ P+ G+ +RGLIQDHI SAVLLT KDTFL+ DEFNQLLY SGV T G +        K
Sbjct: 628  FVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQK 687

Query: 1238 ISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMKIPKQYFPIE 1059
            +    SE  IQ + PA+ KPKPLWTGKQVITA+LN +T    P ++EK+ KIP  +F   
Sbjct: 688  VLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSR 747

Query: 1058 TYE---VQQSENDNKENDEKKAD-NCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGAN 891
              E    Q+ ++D     EK+ D   +LV+KNELVRGVIDK QFG++GLVH+V EL G++
Sbjct: 748  ANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSH 807

Query: 890  TAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQR-KXXXXXXXXXXXVHCEFANF 714
            TAG+LLS LSRLFT +LQMHGFTCGV+DL+IL + D +R K           VH  F   
Sbjct: 808  TAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGI 867

Query: 713  K--RGQIGPLELQLEIEKVICRDREAATASLDMKMKNKL-TKKASQISXXXXXXXXXKPF 543
            K  + +I P+ +QL IEK I  D ++A A LD +M N+L TK +S +          KP 
Sbjct: 868  KDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPS 927

Query: 542  PKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGG 363
             KNCISLMT SGAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTLPCF PWD+ +R+GG
Sbjct: 928  GKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGG 987

Query: 362  YITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRD 183
            YITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD
Sbjct: 988  YITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRD 1047

Query: 182  ADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQKYEHE-HDFNAYIVELPDELKR 6
            ADGS+VQFYYGEDGVDVH+TSF+   K LALNQ  ++++   +   FN+YI ELP+ LK 
Sbjct: 1048 ADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKE 1107

Query: 5    K 3
            K
Sbjct: 1108 K 1108


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score = 1045 bits (2702), Expect = 0.0
 Identities = 539/863 (62%), Positives = 659/863 (76%), Gaps = 10/863 (1%)
 Frame = -2

Query: 2561 DDSQTAKTVSSTVSDGIDTPVAKKSPNQLG--KVAEEFKKQKEAFSGYILPSEVRDVVKR 2388
            D    A+T SST +      +AKK   +     +++E+ KQK  FSG +LPSEV++++K 
Sbjct: 261  DGGNEAETQSSTFASPDGIGIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKEIMKL 320

Query: 2387 LWENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHT 2208
            LWENEAPLCSFI D+QQQ   ++A    HSMFFL  +LVPPIKFRP ++ GD+V+EHPHT
Sbjct: 321  LWENEAPLCSFISDIQQQGSGNSAT---HSMFFLGTVLVPPIKFRPPSKGGDSVMEHPHT 377

Query: 2207 YLLSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQ 2028
             LL+KVLQ NI+LGNA+   + R  I++RWMDLQQSIN+L+DSKT TGQ ++    GICQ
Sbjct: 378  VLLAKVLQANISLGNAH--QSNRATIISRWMDLQQSINLLFDSKTATGQGRRDVASGICQ 435

Query: 2027 LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGK 1848
            LLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN   
Sbjct: 436  LLEKKEGMFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNTVS 495

Query: 1847 LRDAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFE 1668
            LR AI+NG + HPGA  Y DK+ST+KLP ++K RI+ISR+LPSSRGVV Q G+++++E E
Sbjct: 496  LRKAIINGADTHPGATHYIDKLSTLKLPPARKGRISISRRLPSSRGVVTQAGRSSDNEVE 555

Query: 1667 GKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEM 1488
            GK+VYRHL+DGDIVLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEM
Sbjct: 556  GKIVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 615

Query: 1487 NVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFN 1308
            NVHFPQD+ISRAEAYNIVNAN QY+ PT G  +R LIQDHI SA +LT KDTFL YDEFN
Sbjct: 616  NVHFPQDDISRAEAYNIVNANNQYVKPTNGSPIRALIQDHIVSAAILTKKDTFLNYDEFN 675

Query: 1307 QLLYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQL 1128
             LLY SGV   G S +      K++I   + ++ P+ PA+ KP+PLWTGKQ+I A+L+ L
Sbjct: 676  HLLYSSGVSAAG-SGSFRKLGKKVAINFEDNLLSPV-PAIWKPEPLWTGKQLIGAVLDHL 733

Query: 1127 TKGCAPCSIEKEMKIPKQYFPIE-TYEVQQSENDNK----ENDEKKADNCLLVWKNELVR 963
            T+G  P ++EK+ KIP  +F  +  ++  + +  NK    E +E+  ++ +L++KN L+ 
Sbjct: 734  TRGYPPFTVEKQGKIPSDFFKRKLKHKPSKRKGTNKDKERERNEEPGEDTVLIFKNYLIC 793

Query: 962  GVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFD 783
            GVIDKAQFG +GLVH+ QELYG+N AG+LLSA SRLFT FLQ+HGFTCGV+DL++    D
Sbjct: 794  GVIDKAQFGDYGLVHTFQELYGSNAAGILLSAFSRLFTAFLQLHGFTCGVDDLLLSKDID 853

Query: 782  VQR-KXXXXXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNK 606
             +R +           VHCE        I P ELQL+IE+VI  + ++A  +LD +M ++
Sbjct: 854  EKRQQQLEECENCGEEVHCEVVGV-NDFIDPAELQLKIEEVIRSNGDSALTNLDRRMISR 912

Query: 605  LTKKAS-QISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVP 429
            L + +S +I          KP  KNCISLMT SGAKG T NFQQISS+LGQQELEG+RVP
Sbjct: 913  LNELSSKKIEKNLLSEGLFKPTGKNCISLMTTSGAKGGTANFQQISSHLGQQELEGRRVP 972

Query: 428  RMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 249
            RMVSGKTLPCFPPWD+ SRAGG+I DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 973  RMVSGKTLPCFPPWDWASRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1032

Query: 248  LQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQ 69
            LQRCL+KNLE LKVSYD+TVRDADGSIVQFYYGEDG+DVH+TSF+    AL  N   +  
Sbjct: 1033 LQRCLVKNLECLKVSYDHTVRDADGSIVQFYYGEDGIDVHKTSFVAKFDALLANHDIMKA 1092

Query: 68   KYEHE-HDFNAYIVELPDELKRK 3
            KY  E    N+YI +LP+ LK K
Sbjct: 1093 KYSTELRKSNSYITDLPEALKDK 1115


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score = 1045 bits (2702), Expect = 0.0
 Identities = 539/863 (62%), Positives = 659/863 (76%), Gaps = 10/863 (1%)
 Frame = -2

Query: 2561 DDSQTAKTVSSTVSDGIDTPVAKKSPNQLG--KVAEEFKKQKEAFSGYILPSEVRDVVKR 2388
            D    A+T SST +      +AKK   +     +++E+ KQK  FSG +LPSEV++++K 
Sbjct: 261  DGGNEAETQSSTFASPDGIGIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKEIMKL 320

Query: 2387 LWENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHT 2208
            LWENEAPLCSFI D+QQQ   ++A    HSMFFL  +LVPPIKFRP ++ GD+V+EHPHT
Sbjct: 321  LWENEAPLCSFISDIQQQGSGNSAT---HSMFFLGTVLVPPIKFRPPSKGGDSVMEHPHT 377

Query: 2207 YLLSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQ 2028
             LL+KVLQ NI+LGNA+   + R  I++RWMDLQQSIN+L+DSKT TGQ ++    GICQ
Sbjct: 378  VLLAKVLQANISLGNAH--QSNRATIISRWMDLQQSINLLFDSKTATGQGRRDVASGICQ 435

Query: 2027 LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGK 1848
            LLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN   
Sbjct: 436  LLEKKEGMFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNTVS 495

Query: 1847 LRDAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFE 1668
            LR AI+NG + HPGA  Y DK+ST+KLP ++K RI+ISR+LPSSRGVV Q G+++++E E
Sbjct: 496  LRKAIINGADTHPGATHYIDKLSTLKLPPARKGRISISRRLPSSRGVVTQAGRSSDNEVE 555

Query: 1667 GKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEM 1488
            GK+VYRHL+DGDIVLVNRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEM
Sbjct: 556  GKIVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 615

Query: 1487 NVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFN 1308
            NVHFPQD+ISRAEAYNIVNAN QY+ PT G  +R LIQDHI SA +LT KDTFL YDEFN
Sbjct: 616  NVHFPQDDISRAEAYNIVNANNQYVKPTNGSPIRALIQDHIVSAAILTKKDTFLNYDEFN 675

Query: 1307 QLLYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQL 1128
             LLY SGV   G S +      K++I   + ++ P+ PA+ KP+PLWTGKQ+I A+L+ L
Sbjct: 676  HLLYSSGVSAAG-SGSFRKLGKKVAINFEDNLLSPV-PAIWKPEPLWTGKQLIGAVLDHL 733

Query: 1127 TKGCAPCSIEKEMKIPKQYFPIE-TYEVQQSENDNK----ENDEKKADNCLLVWKNELVR 963
            T+G  P ++EK+ KIP  +F  +  ++  + +  NK    E +E+  ++ +L++KN L+ 
Sbjct: 734  TRGYPPFTVEKQGKIPSDFFKRKLKHKPSKRKGTNKDKERERNEEPGEDTVLIFKNYLIC 793

Query: 962  GVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFD 783
            GVIDKAQFG +GLVH+ QELYG+N AG+LLSA SRLFT FLQ+HGFTCGV+DL++    D
Sbjct: 794  GVIDKAQFGDYGLVHTFQELYGSNAAGILLSAFSRLFTAFLQLHGFTCGVDDLLLSKDID 853

Query: 782  VQR-KXXXXXXXXXXXVHCEFANFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNK 606
             +R +           VHCE        I P ELQL+IE+VI  + ++A  +LD +M ++
Sbjct: 854  EKRQQQLEECENCGEEVHCEVVGV-NDFIDPAELQLKIEEVIRSNGDSALTNLDRRMISR 912

Query: 605  LTKKAS-QISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVP 429
            L + +S +I          KP  KNCISLMT SGAKG T NFQQISS+LGQQELEG+RVP
Sbjct: 913  LNELSSKKIEKNLLSEGLFKPTGKNCISLMTTSGAKGGTANFQQISSHLGQQELEGRRVP 972

Query: 428  RMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 249
            RMVSGKTLPCFPPWD+ SRAGG+I DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 973  RMVSGKTLPCFPPWDWASRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1032

Query: 248  LQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVHQ 69
            LQRCL+KNLE LKVSYD+TVRDADGSIVQFYYGEDG+DVH+TSF+    AL  N   +  
Sbjct: 1033 LQRCLVKNLECLKVSYDHTVRDADGSIVQFYYGEDGIDVHKTSFVAKFDALLANHDIMKA 1092

Query: 68   KYEHE-HDFNAYIVELPDELKRK 3
            KY  E    N+YI +LP+ LK K
Sbjct: 1093 KYSTELRKSNSYITDLPEALKDK 1115


>ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha
            curcas]
          Length = 1741

 Score = 1044 bits (2699), Expect = 0.0
 Identities = 552/884 (62%), Positives = 658/884 (74%), Gaps = 32/884 (3%)
 Frame = -2

Query: 2558 DSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWE 2379
            D  T    S+  S   DT V K+   +  + A EF KQ+ AFS  +LPSEV+D +  LWE
Sbjct: 249  DEMTDVEESAEPSGNQDTDV-KRHKKKGSQEAREFYKQRSAFSKQLLPSEVKDALDLLWE 307

Query: 2378 NEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLL 2199
            NE  +CSFI DLQQQ      + AG SMFFL+ ILV  IKFRP  + GD+V EHP T LL
Sbjct: 308  NEDRICSFISDLQQQGFGK--KKAGPSMFFLETILVAAIKFRPPTKGGDSVREHPQTVLL 365

Query: 2198 SKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLE 2019
            SKVL+ NI LG+A+IN  E  +IV RWMDLQQSIN+L+DSKT  G  Q+    GICQLLE
Sbjct: 366  SKVLEANIYLGDAHINK-EHSKIVRRWMDLQQSINILFDSKTAKGPGQRDVTSGICQLLE 424

Query: 2018 KKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRD 1839
            KKEG+FRQKMMGKRVN+ACRSVISPDPYL VNEIG+PP FA++LTYPERVTPWNV KLR+
Sbjct: 425  KKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERVTPWNVAKLRN 484

Query: 1838 AIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKV 1659
            A+ NG E HPGA  Y DK+ST KLP ++KMRIAISRKLPSSRG +MQ GK+++ E+EGK+
Sbjct: 485  AVFNGSESHPGATHYVDKLSTNKLPVARKMRIAISRKLPSSRGAIMQPGKSSDCEYEGKI 544

Query: 1658 VYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVH 1479
            VYRHLQDGD+VL NRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEMNVH
Sbjct: 545  VYRHLQDGDVVLCNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 604

Query: 1478 FPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLL 1299
            FPQDE+SRAEAY IVNAN QY+ P+ G+ +RGLIQDHI S+VLLT KDTFL+ DEFNQLL
Sbjct: 605  FPQDELSRAEAYGIVNANNQYVRPSNGEPLRGLIQDHIISSVLLTKKDTFLSQDEFNQLL 664

Query: 1298 YGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKG 1119
            Y SGV T G++        K+    SE  IQ + PA+ KP+PLWTGKQVI+A+LN +T+G
Sbjct: 665  YSSGVSTAGSTSFHGRPGQKVLWSRSEDEIQTLPPAIWKPEPLWTGKQVISAVLNHITRG 724

Query: 1118 CAPCSIEKEMKIPKQYFPIETYEV-----QQSENDNK-----------ENDEKKAD---- 999
              P ++EKE KIP  +F     E      ++S+ D K           E+ +KK D    
Sbjct: 725  HPPFTVEKEAKIPTNFFNSRAKEYKPCDGKKSDEDKKQKSDVKEKRFNEDKQKKPDKNTP 784

Query: 998  -------NCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFL 840
                     +L+++NELVRGVIDKAQFG++GLVH+V EL+G+NTAG+LLSALSRLFT +L
Sbjct: 785  QKKEPDEEIMLIYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGVLLSALSRLFTAYL 844

Query: 839  QMHGFTCGVEDLIILPHFDVQR-KXXXXXXXXXXXVHCEFANFKRG--QIGPLELQLEIE 669
            QMHGFTCGV+DL+I+   D +R K           VH  F   K    +I P+ELQL IE
Sbjct: 845  QMHGFTCGVDDLLIMESIDDERKKLLESCERSGEAVHRNFIGIKDESIEIDPVELQLNIE 904

Query: 668  KVICRDREAATASLDMKMKNKL-TKKASQISXXXXXXXXXKPFPKNCISLMTISGAKGST 492
            + I  D ++A + LD +M N+L TK +S +          KP  KNCISLMT SGAKGS 
Sbjct: 905  RTIRSDGDSALSYLDRQMSNELNTKTSSGVINKLLSDGLLKPSGKNCISLMTTSGAKGSK 964

Query: 491  VNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYF 312
            VNFQQISS+LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGYI DRFL+GLRPQEYYF
Sbjct: 965  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYF 1024

Query: 311  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDV 132
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+SYD+TVRDADGS+VQFYYGEDGVDV
Sbjct: 1025 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSVVQFYYGEDGVDV 1084

Query: 131  HRTSFLKNLKALALNQVPVHQKYEHE-HDFNAYIVELPDELKRK 3
            HRTSF+   + LA+NQ  ++++  ++   FN+Y+ ELP  L  K
Sbjct: 1085 HRTSFIAKFEQLAMNQDMIYKQCGNQLVTFNSYVSELPKALSEK 1128


>gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]
          Length = 1526

 Score = 1044 bits (2699), Expect = 0.0
 Identities = 552/884 (62%), Positives = 658/884 (74%), Gaps = 32/884 (3%)
 Frame = -2

Query: 2558 DSQTAKTVSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWE 2379
            D  T    S+  S   DT V K+   +  + A EF KQ+ AFS  +LPSEV+D +  LWE
Sbjct: 34   DEMTDVEESAEPSGNQDTDV-KRHKKKGSQEAREFYKQRSAFSKQLLPSEVKDALDLLWE 92

Query: 2378 NEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLL 2199
            NE  +CSFI DLQQQ      + AG SMFFL+ ILV  IKFRP  + GD+V EHP T LL
Sbjct: 93   NEDRICSFISDLQQQGFGK--KKAGPSMFFLETILVAAIKFRPPTKGGDSVREHPQTVLL 150

Query: 2198 SKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLE 2019
            SKVL+ NI LG+A+IN  E  +IV RWMDLQQSIN+L+DSKT  G  Q+    GICQLLE
Sbjct: 151  SKVLEANIYLGDAHINK-EHSKIVRRWMDLQQSINILFDSKTAKGPGQRDVTSGICQLLE 209

Query: 2018 KKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRD 1839
            KKEG+FRQKMMGKRVN+ACRSVISPDPYL VNEIG+PP FA++LTYPERVTPWNV KLR+
Sbjct: 210  KKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERVTPWNVAKLRN 269

Query: 1838 AIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKV 1659
            A+ NG E HPGA  Y DK+ST KLP ++KMRIAISRKLPSSRG +MQ GK+++ E+EGK+
Sbjct: 270  AVFNGSESHPGATHYVDKLSTNKLPVARKMRIAISRKLPSSRGAIMQPGKSSDCEYEGKI 329

Query: 1658 VYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVH 1479
            VYRHLQDGD+VL NRQPTLHKPSIMAHVV VLKGEKTLRMHYANCS+YNADFDGDEMNVH
Sbjct: 330  VYRHLQDGDVVLCNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 389

Query: 1478 FPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLL 1299
            FPQDE+SRAEAY IVNAN QY+ P+ G+ +RGLIQDHI S+VLLT KDTFL+ DEFNQLL
Sbjct: 390  FPQDELSRAEAYGIVNANNQYVRPSNGEPLRGLIQDHIISSVLLTKKDTFLSQDEFNQLL 449

Query: 1298 YGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKG 1119
            Y SGV T G++        K+    SE  IQ + PA+ KP+PLWTGKQVI+A+LN +T+G
Sbjct: 450  YSSGVSTAGSTSFHGRPGQKVLWSRSEDEIQTLPPAIWKPEPLWTGKQVISAVLNHITRG 509

Query: 1118 CAPCSIEKEMKIPKQYFPIETYEV-----QQSENDNK-----------ENDEKKAD---- 999
              P ++EKE KIP  +F     E      ++S+ D K           E+ +KK D    
Sbjct: 510  HPPFTVEKEAKIPTNFFNSRAKEYKPCDGKKSDEDKKQKSDVKEKRFNEDKQKKPDKNTP 569

Query: 998  -------NCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFL 840
                     +L+++NELVRGVIDKAQFG++GLVH+V EL+G+NTAG+LLSALSRLFT +L
Sbjct: 570  QKKEPDEEIMLIYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGVLLSALSRLFTAYL 629

Query: 839  QMHGFTCGVEDLIILPHFDVQR-KXXXXXXXXXXXVHCEFANFKRG--QIGPLELQLEIE 669
            QMHGFTCGV+DL+I+   D +R K           VH  F   K    +I P+ELQL IE
Sbjct: 630  QMHGFTCGVDDLLIMESIDDERKKLLESCERSGEAVHRNFIGIKDESIEIDPVELQLNIE 689

Query: 668  KVICRDREAATASLDMKMKNKL-TKKASQISXXXXXXXXXKPFPKNCISLMTISGAKGST 492
            + I  D ++A + LD +M N+L TK +S +          KP  KNCISLMT SGAKGS 
Sbjct: 690  RTIRSDGDSALSYLDRQMSNELNTKTSSGVINKLLSDGLLKPSGKNCISLMTTSGAKGSK 749

Query: 491  VNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYF 312
            VNFQQISS+LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGYI DRFL+GLRPQEYYF
Sbjct: 750  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYF 809

Query: 311  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDV 132
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+SYD+TVRDADGS+VQFYYGEDGVDV
Sbjct: 810  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSVVQFYYGEDGVDV 869

Query: 131  HRTSFLKNLKALALNQVPVHQKYEHE-HDFNAYIVELPDELKRK 3
            HRTSF+   + LA+NQ  ++++  ++   FN+Y+ ELP  L  K
Sbjct: 870  HRTSFIAKFEQLAMNQDMIYKQCGNQLVTFNSYVSELPKALSEK 913


>ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Gossypium
            raimondii] gi|763751831|gb|KJB19219.1| hypothetical
            protein B456_003G089300 [Gossypium raimondii]
          Length = 1674

 Score = 1043 bits (2697), Expect = 0.0
 Identities = 542/826 (65%), Positives = 633/826 (76%), Gaps = 14/826 (1%)
 Frame = -2

Query: 2522 SDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWENEAPLCSFICDL 2343
            +DG      KK+     KV  EF KQK  FSG +LPSEV+ V+K LWENE  LCS I  +
Sbjct: 274  ADGTSAKARKKA-----KVPLEFLKQKNLFSGPLLPSEVKKVMKLLWENEIELCSLINCI 328

Query: 2342 QQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLNIALGN 2163
            QQQ         G+SMFFL+ +LVPPIKFR   + GD+V+EHP T LLSKVLQ NI+LGN
Sbjct: 329  QQQGFGEKV---GYSMFFLETVLVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGN 385

Query: 2162 AYINDAERYRIVNR-WMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIFRQKMM 1986
            AY ND +  +++ R WMDLQQSIN+L+DSKT   Q +   P GICQLLE+KEG+FRQKMM
Sbjct: 386  AYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQRRDVSP-GICQLLERKEGMFRQKMM 444

Query: 1985 GKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGPEIHPG 1806
            GKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWNV KLR+AI+NG E+HPG
Sbjct: 445  GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSELHPG 504

Query: 1805 AISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQDGDIV 1626
            A  Y DK+ST +LP ++K RI+ISRKLPSSR  + Q GKN ++EFEGK+V RHLQDGD+V
Sbjct: 505  ATHYVDKLSTQRLPPNRKARISISRKLPSSRAAITQPGKNFDYEFEGKIVLRHLQDGDVV 564

Query: 1625 LVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEISRAEA 1446
            LVNRQPTLHKPSIMAHVV VLKGEKT+RMHYANCS+YNADFDGDE+NVHFPQDEISRAEA
Sbjct: 565  LVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEA 624

Query: 1445 YNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVFTTGNS 1266
            YNIVNAN QY+ P+ G+ +R LIQDHI SAVLLT +DTFL+ DEFNQLLY SGV      
Sbjct: 625  YNIVNANNQYVRPSNGEPLRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSGLAQH 684

Query: 1265 WTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSIEKEMK 1086
                    K+ I  SE  + PILPA+LKPKPLWTGKQVITA+LN +T+G  P ++EK  K
Sbjct: 685  HRLGKSGQKVLISSSEEGMLPILPAILKPKPLWTGKQVITAVLNHITRGRPPFTVEKTGK 744

Query: 1085 IPKQYFPIETYE----------VQQSENDNKENDEKKADNCLLVWKNELVRGVIDKAQFG 936
             P+ +F   + E              EN NKE DE+K    +L++KN+LVRGVIDKAQF 
Sbjct: 745  TPRDFFKNRSNENKPKSVGQEGKDAEENSNKEPDEEK----ILIYKNDLVRGVIDKAQFA 800

Query: 935  QFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQR-KXXXX 759
             +GLVH+VQELYG+NTAG LLS  SRLFT+FLQMHGFTCGV+DL+I+   D++R K    
Sbjct: 801  DYGLVHTVQELYGSNTAGFLLSVFSRLFTVFLQMHGFTCGVDDLLIMNDKDIERKKQLEE 860

Query: 758  XXXXXXXVHCEFANFK-RGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQ- 585
                    H EF   K   +I P+ELQL+IEK I RD EAA  +LD  M + L K +SQ 
Sbjct: 861  CEKKVTEAHYEFCAVKVDTEIAPIELQLKIEKTIRRDGEAALTALDRTMISVLNKNSSQG 920

Query: 584  ISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTL 405
            +          KP  +NCISLMT +GAKGS VNFQQISS+LGQQELEGKRVPRMVSGKTL
Sbjct: 921  VLTELLSEGLVKPMGRNCISLMTTTGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTL 980

Query: 404  PCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 225
            PCF PWD+ +RAGG+I+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN
Sbjct: 981  PCFHPWDWAARAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1040

Query: 224  LESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALN 87
            LE LK+SYD+TVRDADGSIVQF YGEDG+DVH+TSF+   +ALALN
Sbjct: 1041 LECLKISYDHTVRDADGSIVQFNYGEDGIDVHQTSFVTKFEALALN 1086


>ref|XP_010105335.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
            gi|587916721|gb|EXC04356.1| DNA-directed RNA polymerase I
            subunit rpa1 [Morus notabilis]
          Length = 1770

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 553/930 (59%), Positives = 664/930 (71%), Gaps = 78/930 (8%)
 Frame = -2

Query: 2558 DSQTAKTVSSTVSDG-IDTPVA--KKSPNQLGKVAEEFKKQKEAFSGY-ILPSEVRDVVK 2391
            + +    V+S  SD   DTP    K   ++ GKV  E+ KQ E FSG  +LPS+V+++++
Sbjct: 185  EEEIINDVTSPDSDADTDTPATSTKSHRSKGGKVPREYLKQTETFSGGPMLPSDVKEMIR 244

Query: 2390 RLWENEAPLCSFICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPH 2211
             LWENE  LC++I D+Q   H      A HSMFFL+ ILVPPIKFRP ++ GD+V+EHPH
Sbjct: 245  LLWENEIELCTYITDIQ---HQGIGNKADHSMFFLETILVPPIKFRPPSKGGDSVMEHPH 301

Query: 2210 TYLLSKVLQLNIALGNAYINDAERYRIVNRWMDLQQSINVLYDSKTTTGQSQKAGPVGIC 2031
            T LL+KVLQ NI LGNA++N  E  +IV RWMDLQQS+NV++DSKT+TGQ   A   GIC
Sbjct: 302  TVLLNKVLQANIELGNAHVNKLEYTKIVRRWMDLQQSVNVMFDSKTSTGQRNVAP--GIC 359

Query: 2030 QLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVG 1851
            QLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWNV 
Sbjct: 360  QLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 419

Query: 1850 KLRDAIVNGPEIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEF 1671
            KLRDAI+NGPE HPGA  Y DK+STVKLP ++K RI+ SRKLPSSRGVVMQ GK  ++E 
Sbjct: 420  KLRDAIINGPETHPGATHYVDKLSTVKLPLNRKARISASRKLPSSRGVVMQNGKTYDYES 479

Query: 1670 EGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDE 1491
            EGK+V+RHLQDGDIVLVNRQPTLHKPSIMAHVV VLKGEKT+RMHYANCS+YNADFDGDE
Sbjct: 480  EGKIVHRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 539

Query: 1490 MNVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEF 1311
            MNVH PQDEISRAE YNI+NAN QY+ PT G+ +R LIQDHI SAVLLT KDTFL +DEF
Sbjct: 540  MNVHLPQDEISRAEGYNILNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLRWDEF 599

Query: 1310 NQLLYGSGVFTTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQ 1131
            N LLY +G+  +G+  +S  +  K+ + D E  ++ +LPA+ KP+PLWTGKQVITALLN 
Sbjct: 600  NHLLYSTGLSNSGSGASSRKFGNKVFVSDFEAELKSLLPAIWKPEPLWTGKQVITALLNY 659

Query: 1130 LTKGCAPCSIEKEMKIPKQYFPIETYEVQQS----ENDNKENDEK--------------- 1008
            +T+G    ++EK  KIP+ +F   T E + S      D+++ +EK               
Sbjct: 660  ITRGFQAFTVEKGGKIPRDFFRSRTVEDESSRKNAHKDDQDEEEKPSRRKADHIESKRKK 719

Query: 1007 -----------------KADNCLLVWKNELVRGVIDKAQFGQFGLVHSVQELYGANTAGL 879
                             + D+ L +++N  VRGVIDKAQFG +GL+H+V ELYG+NTAGL
Sbjct: 720  EPITGRKIDKNELKMKEELDDKLFIYRNNFVRGVIDKAQFGDYGLIHTVHELYGSNTAGL 779

Query: 878  LLSALSRLFTMFLQMHGFTCGVEDLIILPHFDVQR-KXXXXXXXXXXXVHCEFANFKRGQ 702
            LLS+LSRLFT+FLQMHGFTCGV+DL+I+   D +R +           VH EF   K  +
Sbjct: 780  LLSSLSRLFTVFLQMHGFTCGVDDLLIVKSKDKERGRVLEKCEDIGEEVHREFVGVKDDE 839

Query: 701  -IGPLELQLEIEKVICRDREAATASLDMKM---KNKLTKKASQISXXXXXXXXXKPFPKN 534
             I P  LQL+IEK +  + EAA ASLD KM    N +T K+ ++           P  KN
Sbjct: 840  NIDPFTLQLKIEKTVRINGEAALASLDRKMISQVNDITSKSEELKGLLSKALLKPPI-KN 898

Query: 533  CISLMTISGAKGST--------------------------------VNFQQISSYLGQQE 450
            CISLMT SGAKG                                  VNFQQISS+LGQQE
Sbjct: 899  CISLMTTSGAKGGAEYSNTPPQAGVKMSFRASLLMKLSNCALGKPLVNFQQISSHLGQQE 958

Query: 449  LEGKRVPRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAV 270
            LEGKRVPRM SGKTLPCFP WD+ +RAGG + D FLSGLRPQE+YFHCMAGREGLVDTAV
Sbjct: 959  LEGKRVPRMASGKTLPCFPAWDWRARAGGLVIDCFLSGLRPQEFYFHCMAGREGLVDTAV 1018

Query: 269  KTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALAL 90
            KTSRSGYLQRCLIKNLE LKVSYD+TVRDADGSIVQF YGEDGVDVH+TSFL N +ALA 
Sbjct: 1019 KTSRSGYLQRCLIKNLECLKVSYDHTVRDADGSIVQFCYGEDGVDVHQTSFLANFEALAA 1078

Query: 89   NQVPVHQKYEHEHDFNA-YIVELPDELKRK 3
            N+  +++K     D ++ YI +LP  L++K
Sbjct: 1079 NKQMIYKKCCRGIDKSSPYIKDLPSALEKK 1108


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 536/842 (63%), Positives = 639/842 (75%), Gaps = 18/842 (2%)
 Frame = -2

Query: 2537 VSSTVSDGIDTPVAKKSPNQLGKVAEEFKKQKEAFSGYILPSEVRDVVKRLWENEAPLCS 2358
            +  T S+G      KK      +V  EF KQK  FSG +LPSEV+ + K LWENE  LCS
Sbjct: 269  IGFTGSEGNGAKARKKK----AQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCS 324

Query: 2357 FICDLQQQQHSSAARVAGHSMFFLDCILVPPIKFRPVARTGDAVVEHPHTYLLSKVLQLN 2178
             I D+QQQ      +  G+SMFFL+ ILVPPIKFR   + GD+V+EHP T LLSKVLQ N
Sbjct: 325  IISDIQQQ---GFGKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQAN 381

Query: 2177 IALGNAYINDAERYRIVNR-WMDLQQSINVLYDSKTTTGQSQKAGPVGICQLLEKKEGIF 2001
            I+LGNAY N+ +  + V R WMDLQQS+N+L+DSKT   Q +     GICQLLEKKEG+F
Sbjct: 382  ISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSS-GICQLLEKKEGMF 440

Query: 2000 RQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRDAIVNGP 1821
            RQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWNV KLR+AI+NG 
Sbjct: 441  RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGS 500

Query: 1820 EIHPGAISYSDKVSTVKLPSSKKMRIAISRKLPSSRGVVMQLGKNTEHEFEGKVVYRHLQ 1641
            E HPGA  Y DK+ST +LP S+K RI+ISRKLPSSRG + Q GKN ++EFEGK+V RHLQ
Sbjct: 501  EFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQ 560

Query: 1640 DGDIVLVNRQPTLHKPSIMAHVVHVLKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEI 1461
            DGD+VLVNRQPTLHKPSIMAHVV VLKGEKT+RMHYANCS+YNADFDGDE+NVHFPQDEI
Sbjct: 561  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEI 620

Query: 1460 SRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQLLYGSGVF 1281
            SRAEAYNIVNAN QY+ P+ G+ +R LIQDHI SAVLLT +DTFL+ DEFNQLLY SGV 
Sbjct: 621  SRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVS 680

Query: 1280 TTGNSWTSSNYSGKISIVDSEGVIQPILPAVLKPKPLWTGKQVITALLNQLTKGCAPCSI 1101
            +   +  S     K+ +  SE  + PI+PA+LKPKPLWTGKQVI+++L+ +T+G  P ++
Sbjct: 681  SLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTV 740

Query: 1100 EKEMKIPKQYFPIETYEVQQS--ENDNKENDEKKA------------DNCLLVWKNELVR 963
             K  KIP+ +F     + +QS  E +  +ND +KA            +  +L+++N+LVR
Sbjct: 741  GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR 800

Query: 962  GVIDKAQFGQFGLVHSVQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFD 783
            GVIDKAQF  +GLVH+VQELYG+NTAG+LLS  SRLFT+FLQMHGFTCGV+DL+I+   D
Sbjct: 801  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 860

Query: 782  VQR-KXXXXXXXXXXXVHCEFANFK-RGQIGPLELQLEIEKVICRDREAATASLDMKMKN 609
            ++R K            H E    K   +  P ELQLEIE+ I RD E A  +LD KM +
Sbjct: 861  IERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMIS 920

Query: 608  KLTKKASQ-ISXXXXXXXXXKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRV 432
             L + +S+ +          K   +NCISLMT SGAKGS VNFQQISS+LGQQELEGKRV
Sbjct: 921  VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRV 980

Query: 431  PRMVSGKTLPCFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG 252
            PRMVSGKTLPCF PWD+ +RAGG+I+DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG
Sbjct: 981  PRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1040

Query: 251  YLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLKALALNQVPVH 72
            YLQRCLIKNLE LK+SYD+TVRDADGSIVQF YGEDG+DVH+TSF+   +ALALNQ  + 
Sbjct: 1041 YLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMS 1100

Query: 71   QK 66
            +K
Sbjct: 1101 EK 1102