BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00017149
         (882 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP08205.1| unnamed protein product [Coffea canephora]            329   2e-87
ref|XP_011081724.1| PREDICTED: RNA polymerase sigma factor sigC ...   164   8e-38
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...   142   3e-31
ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC ...   135   3e-29
ref|XP_009623296.1| PREDICTED: RNA polymerase sigma factor sigC ...   132   4e-28
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   131   8e-28
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   128   5e-27
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC ...   123   2e-25
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   119   2e-24
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   119   3e-24
ref|XP_009757464.1| PREDICTED: RNA polymerase sigma factor sigC ...   118   7e-24
ref|XP_011019551.1| PREDICTED: RNA polymerase sigma factor sigC ...   117   1e-23
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC ...   117   1e-23
ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-...   115   3e-23
gb|AKC88679.1| sigma factor [California macrophylla]                  115   4e-23
ref|XP_008444981.1| PREDICTED: RNA polymerase sigma factor sigC ...   115   6e-23
gb|AKC88698.1| sigma factor [Pelargonium exstipulatum]                112   3e-22
gb|AKC88689.1| sigma factor [Hypseocharis bilobata]                   112   3e-22
ref|XP_004148429.2| PREDICTED: RNA polymerase sigma factor sigC ...   112   3e-22
ref|XP_009623297.1| PREDICTED: RNA polymerase sigma factor sigC ...   112   5e-22

>emb|CDP08205.1| unnamed protein product [Coffea canephora]
          Length = 599

 Score =  329 bits (843), Expect = 2e-87
 Identities = 167/187 (89%), Positives = 173/187 (92%)
 Frame = -3

Query: 562 GREAVYDLAKMSSFSVAYGDTTTWLSDPMRVKMCSSATQVRENDNSETEDMEDAVKRWSY 383
           G EAVY+ AKMSSFSVAYGDTTTWLSDPMRVKMCSSATQ RENDNSETEDMEDAV RWSY
Sbjct: 73  GWEAVYESAKMSSFSVAYGDTTTWLSDPMRVKMCSSATQARENDNSETEDMEDAVSRWSY 132

Query: 382 PGSCNMAHNDVSSSRENDNSTYLTSLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDI 203
            GSCNMAHND+SSSREN+NS YL SLRNTKAL FGLLMKNL VLEETIADSGVLRLEEDI
Sbjct: 133 HGSCNMAHNDISSSRENNNSIYLASLRNTKALHFGLLMKNLDVLEETIADSGVLRLEEDI 192

Query: 202 LVQLERLGALKLFQTCLCRMLKPSTLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKK 23
           LVQLERLGAL+LFQTCLCRMLKPSTL DLSD+ T PVEASQIN PVED+VGKKVVHSVKK
Sbjct: 193 LVQLERLGALELFQTCLCRMLKPSTLYDLSDKATKPVEASQINCPVEDVVGKKVVHSVKK 252

Query: 22  AKRKSRR 2
            KRKSRR
Sbjct: 253 EKRKSRR 259


>ref|XP_011081724.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Sesamum
           indicum]
          Length = 556

 Score =  164 bits (415), Expect = 8e-38
 Identities = 102/219 (46%), Positives = 134/219 (61%), Gaps = 1/219 (0%)
 Frame = -3

Query: 655 MGFRLTLKW-GFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDP 479
           MGFRL LKW G SVQ                +GR+  Y LA++S+ SV YG+T T L+D 
Sbjct: 1   MGFRLNLKWSGLSVQSPFSTSTSSLPYTYPCRGRDTSYILARLSASSVLYGETET-LNDA 59

Query: 478 MRVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLRN 299
            RV +CSS+ Q+ EN    T + + AV + S  G  ++    + +S   D   YLTSL+ 
Sbjct: 60  SRVHVCSSSPQLLENYYLGTRETKVAVGKGSSDGLSSLLEKHIETSNSEDKLAYLTSLQA 119

Query: 298 TKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLCD 119
           T+  QF LLMKNL +LE+  +DS V+RLE DIL QLERLGAL+LF +CL R LK ST  D
Sbjct: 120 TQLSQFRLLMKNLDMLEDMFSDSNVVRLERDILEQLERLGALRLFYSCLSRTLKSSTSFD 179

Query: 118 LSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           LS+ TT  VE  ++N  V++ VG +VV S +K  RK RR
Sbjct: 180 LSNATTELVEEPKVNDSVDNHVG-EVVRSGRKELRKLRR 217


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  142 bits (358), Expect = 3e-31
 Identities = 92/219 (42%), Positives = 118/219 (53%), Gaps = 1/219 (0%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           MGFRL LKW F +                 +G+EA +D  + S  SV   D  +   DP 
Sbjct: 3   MGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPF 62

Query: 475 RVKMCSS-ATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLRN 299
           +   CSS A Q  END S  E M+  + + S+ G      N   +    D S  +  L+ 
Sbjct: 63  KPFACSSGALQTFENDYSAMEAMKMKIGKCSH-GDLFKIVNASQAPIGEDISASVAGLQA 121

Query: 298 TKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLCD 119
           +KA QF LL++NL +LEE  ADS ++RLE DI+VQL RLGALKLFQ CL R LK ST  D
Sbjct: 122 SKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFD 181

Query: 118 LSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           L    T  +   Q NG V+D + K VV S KK +RKS+R
Sbjct: 182 LFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKR 220


>ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC [Erythranthe guttatus]
          Length = 562

 Score =  135 bits (341), Expect = 3e-29
 Identities = 90/221 (40%), Positives = 124/221 (56%), Gaps = 3/221 (1%)
 Frame = -3

Query: 655 MGFRLTLKW-GFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDP 479
           MGFRL L W G SVQ                +GR++ Y LA+ S+ SV YGDT T     
Sbjct: 1   MGFRLNLNWCGLSVQSPLSTSTSSWPTSSSCRGRDSSYFLARSSAASVIYGDTETLNDTS 60

Query: 478 MRVKMCSSATQVRENDN-SETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLR 302
             + +  S+ Q+ EN      + ++ A+ + S     ++  +D+   +  D    LTS++
Sbjct: 61  RGIHVYPSSHQLLENYYLGGAKQLKVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQ 120

Query: 301 NTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLC 122
            T+A +  LLMKNL VLE+  ADS  +RLE DIL QLERLGAL+LF +CL R +K  T  
Sbjct: 121 ATQASKLRLLMKNLDVLEDMFADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTSF 180

Query: 121 DLSDETTTPV-EASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           DLSD  T  V E +++N  V++ +GK  VHS KK  RK RR
Sbjct: 181 DLSDGPTEIVEECARVNDSVDNHLGKVFVHSGKKELRKLRR 221


>ref|XP_009623296.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Nicotiana
           tomentosiformis]
          Length = 572

 Score =  132 bits (331), Expect = 4e-28
 Identities = 92/223 (41%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           MGFRL LKWGFSVQ                KG+EA+YD A+ S       D     SDP 
Sbjct: 18  MGFRLYLKWGFSVQPPFSSNSSSWPSSHSFKGKEALYDPAR-SLKPFINEDCEPSHSDPF 76

Query: 475 RVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSS-----SRENDNSTYLT 311
           RV+ C S  Q+  +D S T +++  + R    GS    + D+ S     S + +  TYL 
Sbjct: 77  RVRTCLSDPQLWTSDTSVTTEIKTRIGR----GSPTNIYGDIGSPKNVISLDGEKPTYLN 132

Query: 310 SLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPS 131
           +   T+AL F LLMKNL +LE   ADS V RLE DI+VQL++LGAL+ F TCL R    S
Sbjct: 133 T---TRALHFSLLMKNLDLLENMFADSEVSRLERDIMVQLDKLGALEFFHTCLSRTNHCS 189

Query: 130 TLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           T  ++ D     +E  + +G V + + K VV S KK +RKSRR
Sbjct: 190 TFPEVLDVPRELIEEIEKDGLVGNGIDKVVVRSKKKQERKSRR 232


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  131 bits (329), Expect = 8e-28
 Identities = 92/223 (41%), Positives = 120/223 (53%), Gaps = 5/223 (2%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           MGFRL LKWGFSVQ                KGREA+YD A+     +  GD     SDP 
Sbjct: 1   MGFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYDPARSLKPFIT-GDCEPSHSDPF 59

Query: 475 RVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSS-----SRENDNSTYLT 311
           RV+ C S  Q+  +D S T +++    R    GS +  + D+ S     S + +  TYL 
Sbjct: 60  RVQTCLSDPQLWTSDTSVTTEIKTRNGR----GSPSNVYGDIGSHKIGISPDGEKPTYLN 115

Query: 310 SLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPS 131
           +   TK+L F LLMKNL +LE   ADS + RLE DILVQLE+LGAL+ F TCL R    S
Sbjct: 116 T---TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSS 172

Query: 130 TLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           T   + D     ++  + +  V + + K VV S KK +RKSRR
Sbjct: 173 TFPKVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRR 215


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  128 bits (322), Expect = 5e-27
 Identities = 83/188 (44%), Positives = 107/188 (56%), Gaps = 1/188 (0%)
 Frame = -3

Query: 562 GREAVYDLAKMSSFSVAYGDTTTWLSDPMRVKMCSS-ATQVRENDNSETEDMEDAVKRWS 386
           G+EA +D  + S  SV   D  +   DP +   CSS A Q  END S  E M+  + + S
Sbjct: 84  GKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCS 143

Query: 385 YPGSCNMAHNDVSSSRENDNSTYLTSLRNTKALQFGLLMKNLHVLEETIADSGVLRLEED 206
           + G      N   +    D S  +  L+ +KA QF LL++NL +LEE  ADS ++RLE D
Sbjct: 144 H-GDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERD 202

Query: 205 ILVQLERLGALKLFQTCLCRMLKPSTLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVK 26
           I+VQL RLGALKLFQ CL R LK ST  DL    T  +   Q NG V+D + K VV S K
Sbjct: 203 IMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGK 262

Query: 25  KAKRKSRR 2
           K +RKS+R
Sbjct: 263 KEERKSKR 270


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC [Solanum lycopersicum]
          Length = 551

 Score =  123 bits (308), Expect = 2e-25
 Identities = 88/219 (40%), Positives = 117/219 (53%), Gaps = 1/219 (0%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           MGFRL LKWGFS+Q                KGRE +YD A+ S      GD     SDP 
Sbjct: 1   MGFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYDPAR-SLKPFINGDCEPSHSDPF 59

Query: 475 RVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSR-ENDNSTYLTSLRN 299
           RV+ C S  Q+  +D S T + +    R    GS +  + D+ S + + +  TYL +   
Sbjct: 60  RVQTCLSDPQLWTSDASVTTETKTRNGR----GSPSNVYGDIGSYKIDGEKPTYLNT--- 112

Query: 298 TKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLCD 119
           TK+L F LLMKNL +LE   ADS + RLE DILVQLE+LGAL+ F TCL R    S+   
Sbjct: 113 TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPK 172

Query: 118 LSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           + D     ++  + +  V + + K VV S KK +R SRR
Sbjct: 173 VLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRR 211


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
           gi|462419859|gb|EMJ24122.1| hypothetical protein
           PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  119 bits (299), Expect = 2e-24
 Identities = 86/223 (38%), Positives = 120/223 (53%), Gaps = 5/223 (2%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXK-GREAVYDLAKMSSFSVAYGDTTTWLSDP 479
           +GFRL LK GF V                   GRE  ++ A++S  SV   +      DP
Sbjct: 3   LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 478 MRVKMCSSAT-QVRENDNSETEDMEDAVKRWSYPGSCN---MAHNDVSSSRENDNSTYLT 311
           ++V    SA+ Q+ E+  SE E+++ A +R     S N   +A     SS+         
Sbjct: 63  LKVYTFPSASPQILEDGVSELEEVKTAFRRVPKSFSDNQMPVAEGKFISSK--------- 113

Query: 310 SLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPS 131
            L    A  F LL++NL+VLEET A S VL+LE++IL+QL RLGALKLF  CL R LK S
Sbjct: 114 GLEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTS 173

Query: 130 TLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           +  DLSD  T PVE  ++    ++ VG+ +V S KK +R+SR+
Sbjct: 174 SFLDLSDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRK 216


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  119 bits (298), Expect = 3e-24
 Identities = 82/218 (37%), Positives = 110/218 (50%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           +GFRLT KWG  +Q                +G EA  + A++S  SV   +         
Sbjct: 3   VGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSF 62

Query: 475 RVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLRNT 296
           +   CSSA Q  END  + E ++  V + S+    NM  ND   S E + ST  T LR  
Sbjct: 63  KSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGND-KVSVEEEISTSHTRLRER 121

Query: 295 KALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLCDL 116
              +   L+ NL  LE+ +AD   L+LE DIL+QL RLGAL+ F  CL R L+ S + DL
Sbjct: 122 MTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDL 181

Query: 115 SDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           S   T     S+ +G + DL GK VV + KK +RK RR
Sbjct: 182 SAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRR 219


>ref|XP_009757464.1| PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana
           sylvestris]
          Length = 554

 Score =  118 bits (295), Expect = 7e-24
 Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           MGFRL LKWGFSVQ                KG+EA+YD A+ S      GD     SDP 
Sbjct: 1   MGFRLHLKWGFSVQPPFSSNSSAWPSSHSFKGKEALYDPAR-SLKPFINGDCEPSHSDPF 59

Query: 475 RVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSR-----ENDNSTYLT 311
           RV+ C S  Q+  +D S T +++  + R    GS +  + D+ S +     + +  +YL+
Sbjct: 60  RVRTCLSDPQLWTSDISVTTEIKTRIGR----GSPSNIYGDIGSDKTGISPDGEKPSYLS 115

Query: 310 SLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPS 131
           +   T+A  F LLMKN+ +LE   ADS + RLE DILVQLE+LGAL+ F + L R L  S
Sbjct: 116 T---TRAPHFSLLMKNIDLLENMFADSEMSRLENDILVQLEKLGALEFFHSRLSRTLH-S 171

Query: 130 TLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           T  ++ D     VE  + +  V + + K VV S KK +R SRR
Sbjct: 172 TSPEVLDVPRELVEEIEKDDLVGNGIDKVVVRSRKKQERNSRR 214


>ref|XP_011019551.1| PREDICTED: RNA polymerase sigma factor sigC [Populus euphratica]
          Length = 559

 Score =  117 bits (293), Expect = 1e-23
 Identities = 81/218 (37%), Positives = 109/218 (50%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPM 476
           +GFR T KWG  +Q                +G EA  + A++S  SV   +         
Sbjct: 3   VGFRPTPKWGSPMQSHSVTNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSF 62

Query: 475 RVKMCSSATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLRNT 296
           +   CSSA Q  END  + E ++  V + S+    N   ND   S E + ST  T LR  
Sbjct: 63  KSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNTMGND-KVSVEEEISTSHTRLRER 121

Query: 295 KALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLCDL 116
              +F  L+ NL  LE+ +AD   L+LE DIL+QL RLGAL+ F  CL R L+ S   DL
Sbjct: 122 MTSRFSFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNALDL 181

Query: 115 SDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           S   T     S+ +G ++DL GK VV + KK +RK RR
Sbjct: 182 SAVPTENTGESKTDGMLDDLTGKTVVRTGKKEERKFRR 219


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC [Fragaria vesca subsp.
           vesca]
          Length = 545

 Score =  117 bits (292), Expect = 1e-23
 Identities = 83/220 (37%), Positives = 115/220 (52%), Gaps = 2/220 (0%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXK-GREAVYDLAKMSSFSVAYGDTTTWLSDP 479
           +GFRL LK GF +                   GRE  +  A +S  SV   +  T   DP
Sbjct: 3   LGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSKDP 62

Query: 478 MRVKMCSSAT-QVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLR 302
           ++V  C SA+ Q+ ++  SE E+  +  +R S  GS NM          +D      S  
Sbjct: 63  LKVYTCPSASPQLLDDGLSEMEEKMNP-RRMSKSGSANMI---------DDKEYSFMSSA 112

Query: 301 NTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLC 122
             +   + LL++NL+VLEET ADSGV +LE++IL+QL RLGALKLF+ CL R LK S+  
Sbjct: 113 GLRTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSFL 172

Query: 121 DLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           DLSD  T P+E  +          K +V S KK ++KSR+
Sbjct: 173 DLSDIPTEPIEKHKTE-------RKNIVRSGKKEEQKSRK 205


>ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-like [Prunus mume]
          Length = 553

 Score =  115 bits (289), Expect = 3e-23
 Identities = 85/220 (38%), Positives = 118/220 (53%), Gaps = 2/220 (0%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXK-GREAVYDLAKMSSFSVAYGDTTTWLSDP 479
           +GFRL LK GF V                   GRE  ++ A++S  SV   +      DP
Sbjct: 3   LGFRLNLKCGFPVHSSYWQTTSPSKLSSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 478 MRVKMCSSAT-QVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLR 302
           ++V  C SA+ Q+ E+  SE E  E A +R   P S +     V+  +   +      L 
Sbjct: 63  LKVYTCPSASPQILEDGVSEME--EAAFRR--VPKSISDNRMPVAEGKFISSK----GLE 114

Query: 301 NTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLC 122
              A  F LL++NL+VLEET A S VL+LE++IL+QL RLGALKLF  CL R LK S+  
Sbjct: 115 ACTASHFSLLLQNLNVLEETFATSNVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFL 174

Query: 121 DLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           DLSD  T PVE  ++    ++ V + +V S KK +R+SR+
Sbjct: 175 DLSDIPTVPVEEGKMERKEDNNVFEIIVRSGKKEERRSRK 214


>gb|AKC88679.1| sigma factor [California macrophylla]
          Length = 561

 Score =  115 bits (288), Expect = 4e-23
 Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 5/223 (2%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXK---GREAVYDLAKMSSFSVAYGDTTTWLS 485
           MG RL LKW F +                     GRE  +   ++   SV   D      
Sbjct: 1   MGLRLNLKWDFPIHSHSLPTSPFKLPPHSSSAVRGRETSFSGTRLLYLSVISEDGENSHR 60

Query: 484 DPMRVKMCSS-ATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTS 308
           +P++    SS A Q+ +ND  +  DM+  + + SY G  +M  ++ +   E  + +   S
Sbjct: 61  EPLKAYASSSVAPQILDNDFIQVGDMQ--INKRSYSGLQSMIEDNFTHLGEGISFSQ-AS 117

Query: 307 LRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCL-CRMLKPS 131
           L  ++  QF LLM+NL++LEET ADS V RLE DIL+QL RLGALKLF TCL  R  + S
Sbjct: 118 LHASRPAQFNLLMENLNILEETFADSNVSRLERDILLQLGRLGALKLFNTCLSSRTFEAS 177

Query: 130 TLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
            +  LSD  T  ++ ++ N   E+ +G+  V S KK KRKSRR
Sbjct: 178 NVLGLSDVPTEDIKITK-NSTKEEHIGRIFVRSAKKDKRKSRR 219


>ref|XP_008444981.1| PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo]
          Length = 560

 Score =  115 bits (287), Expect = 6e-23
 Identities = 80/217 (36%), Positives = 109/217 (50%), Gaps = 3/217 (1%)
 Frame = -3

Query: 649 FRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPMRV 470
           FR  LKWGF +Q                KGREA ++  ++S FS    +  +   + ++ 
Sbjct: 6   FRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPRETLKT 65

Query: 469 KMC-SSATQVREND--NSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTYLTSLRN 299
             C S A Q   +D  N E  +M    K  S   S +        S+  DN +  TS+  
Sbjct: 66  YTCLSEAPQTSPDDLLNLEEIEMNSGAKSLS---SLHYGIKSTRPSKVEDNFSSPTSMPT 122

Query: 298 TKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPSTLCD 119
            KA  FG+LM+NL VLEET A+SG+L LE DI++QL +LGAL+ F TCL R LK S+  D
Sbjct: 123 GKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD 182

Query: 118 LSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKS 8
           LSD      E   +N    D      V+S K+A R+S
Sbjct: 183 LSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRS 219


>gb|AKC88698.1| sigma factor [Pelargonium exstipulatum]
          Length = 559

 Score =  112 bits (281), Expect = 3e-22
 Identities = 86/225 (38%), Positives = 117/225 (52%), Gaps = 7/225 (3%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMS--SFSVAYGDTTTWLSD 482
           MG RL LKW   +                  G+EA ++  ++   SF    G+ +    +
Sbjct: 1   MGLRLNLKWDIPIHSRSFPTSPSRLPSSVR-GKEASFNGTRLLFLSFIPDEGENSHSHRE 59

Query: 481 PMRVKMCSSAT-QVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSR---ENDNSTYL 314
           P++    SSA  Q  +ND +E  D++   +      SCN  H+ +  SR   E   S+  
Sbjct: 60  PLKGYASSSAAPQTLDNDFTEIRDLQINKR------SCNGRHSMIEDSRRLTEEGISSSR 113

Query: 313 TSLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCL-CRMLK 137
            SL   +   FG+LM+NL VLEET ADS  LRLE DIL+Q++RLGALKLF  CL  R ++
Sbjct: 114 ASLPACRPAHFGMLMENLDVLEETFADSNALRLERDILLQVQRLGALKLFNICLSSRTIE 173

Query: 136 PSTLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
            S   DLSD    P+E   I      L+GK++V S KK KRKSRR
Sbjct: 174 TSNAVDLSD---VPIEG--IKDCTSRLMGKRIVRSGKKDKRKSRR 213


>gb|AKC88689.1| sigma factor [Hypseocharis bilobata]
          Length = 566

 Score =  112 bits (281), Expect = 3e-22
 Identities = 83/226 (36%), Positives = 116/226 (51%), Gaps = 8/226 (3%)
 Frame = -3

Query: 655 MGFRLTLKWGFSVQXXXXXXXXXXXXXXXXKG------REAVYDLAKMSSFSVAYGDTTT 494
           MGFRL LK GF +                         REA ++  ++   S+   +   
Sbjct: 1   MGFRLNLKLGFPIHSHSLPTAPSRLPASSSSSSSSVHAREASFNTTRLFFLSIISEEGEK 60

Query: 493 WLSDPMRVKMCS-SATQVRENDNSETEDMEDAVKRWSYPGSCNMAHNDVSSSRENDNSTY 317
              DP++    S +A Q   ND  E  +M+    + SY G  ++  + +    E  +S+ 
Sbjct: 61  SHKDPLKAYASSYAAPQTLGNDFLEMGEMQS--NKRSYGGLHSIIEDTLMHVGEGISSSG 118

Query: 316 LTSLRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCL-CRML 140
            TSLR ++   F LLM+NL VLEET AD  VLRLE DIL+QL RLGALKLF   L  R +
Sbjct: 119 -TSLRVSRPAHFSLLMENLDVLEETFADKNVLRLERDILLQLGRLGALKLFNIFLSSRTI 177

Query: 139 KPSTLCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKSRR 2
           + S + DLSD  T  ++  ++N    + + KK+ HS KK KRKSRR
Sbjct: 178 ETSNIFDLSDVPTEDIKDCKVNSTKHERITKKIFHSGKKEKRKSRR 223


>ref|XP_004148429.2| PREDICTED: RNA polymerase sigma factor sigC [Cucumis sativus]
           gi|700207669|gb|KGN62788.1| hypothetical protein
           Csa_2G372830 [Cucumis sativus]
          Length = 560

 Score =  112 bits (281), Expect = 3e-22
 Identities = 80/220 (36%), Positives = 108/220 (49%), Gaps = 6/220 (2%)
 Frame = -3

Query: 649 FRLTLKWGFSVQXXXXXXXXXXXXXXXXKGREAVYDLAKMSSFSVAYGDTTTWLSDPMRV 470
           FR  L+WGF +Q                KGREA ++  ++S FS    +  +   + ++ 
Sbjct: 6   FRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKT 65

Query: 469 KMC-SSATQVREND--NSETEDMEDAVKRWSYPGSCNMAHNDVSSSREN---DNSTYLTS 308
             C S A Q   ND  N E  +M    K      S    H  + S+R +   DN +  TS
Sbjct: 66  YTCLSEAPQTSANDLLNLEEIEMNSGAK------SLGPMHYGIKSTRPSKVEDNFSSCTS 119

Query: 307 LRNTKALQFGLLMKNLHVLEETIADSGVLRLEEDILVQLERLGALKLFQTCLCRMLKPST 128
           L   KA  FG+LM+NL VLEET  +SG+L LE DI++QL +LGAL+ F TCL R LK S+
Sbjct: 120 LPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSS 179

Query: 127 LCDLSDETTTPVEASQINGPVEDLVGKKVVHSVKKAKRKS 8
             D S       E   +N    D      V+S KKA R+S
Sbjct: 180 FHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRS 219


>ref|XP_009623297.1| PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana
           tomentosiformis]
          Length = 560

 Score =  112 bits (279), Expect = 5e-22
 Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 5/192 (2%)
 Frame = -3

Query: 562 GREAVYDLAKMSSFSVAYGDTTTWLSDPMRVKMCSSATQVRENDNSETEDMEDAVKRWSY 383
           G+EA+YD A+ S       D     SDP RV+ C S  Q+  +D S T +++  + R   
Sbjct: 37  GKEALYDPAR-SLKPFINEDCEPSHSDPFRVRTCLSDPQLWTSDTSVTTEIKTRIGR--- 92

Query: 382 PGSCNMAHNDVSS-----SRENDNSTYLTSLRNTKALQFGLLMKNLHVLEETIADSGVLR 218
            GS    + D+ S     S + +  TYL +   T+AL F LLMKNL +LE   ADS V R
Sbjct: 93  -GSPTNIYGDIGSPKNVISLDGEKPTYLNT---TRALHFSLLMKNLDLLENMFADSEVSR 148

Query: 217 LEEDILVQLERLGALKLFQTCLCRMLKPSTLCDLSDETTTPVEASQINGPVEDLVGKKVV 38
           LE DI+VQL++LGAL+ F TCL R    ST  ++ D     +E  + +G V + + K VV
Sbjct: 149 LERDIMVQLDKLGALEFFHTCLSRTNHCSTFPEVLDVPRELIEEIEKDGLVGNGIDKVVV 208

Query: 37  HSVKKAKRKSRR 2
            S KK +RKSRR
Sbjct: 209 RSKKKQERKSRR 220