BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00014192
         (2192 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011069585.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   836   0.0  
ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   836   0.0  
ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   836   0.0  
ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   834   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   820   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   819   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythra...   818   0.0  
ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic...   814   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   813   0.0  
ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   810   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       761   0.0  
ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isof...   750   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...   750   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   748   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   743   0.0  
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...   742   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   742   0.0  
ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   741   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   740   0.0  
ref|XP_004144791.2| PREDICTED: DNA-directed RNA polymerase 3, ch...   739   0.0  

>ref|XP_011069585.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X3
            [Sesamum indicum]
          Length = 816

 Score =  836 bits (2159), Expect = 0.0
 Identities = 421/616 (68%), Positives = 478/616 (77%), Gaps = 1/616 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFK 1667
            SD +DD+F    +  + LQ +P+G    LTKE       R FI+DPPWIS+L MK+  F+
Sbjct: 41   SDCTDDSFPGKPEKLSTLQVMPNGFQSNLTKE----SSGRGFIQDPPWISSLYMKSLLFR 96

Query: 1666 SKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
            SK +   K+EFQE ERRKY +LRRRQI+AETEAW                KKLAPNLPY+
Sbjct: 97   SKNRSEVKIEFQETERRKYYLLRRRQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYV 156

Query: 1486 KKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKL LGWFEPLR +                 APFID LPADKMAVIVMHK+M LLM G +
Sbjct: 157  KKLILGWFEPLREAIEKEQNSQRSKKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGK 216

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            ++RCVRVVEAAVQIGVAIEHEV+IHNFLEKTKK QRKE  AE+      E  ILRKRV++
Sbjct: 217  EDRCVRVVEAAVQIGVAIEHEVRIHNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKS 276

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LIRR RV E QKLV+N + KSW RDTQAKLGC LIELLT++AYVQPPV+QS ++PPD RP
Sbjct: 277  LIRRNRVIEVQKLVRNEESKSWSRDTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRP 336

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AFRH FKIA +E+GQN VK+YGVIECDP++ +GLD++V H           PKKWKGYDK
Sbjct: 337  AFRHFFKIAPRESGQNVVKKYGVIECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDK 396

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GGYLFLPSYLMRTHGSR+QQ A+K  P KQMQKVYEALDTLGNTKWRVN+RIL+VVE +W
Sbjct: 397  GGYLFLPSYLMRTHGSRKQQKAVKTVPPKQMQKVYEALDTLGNTKWRVNKRILSVVECIW 456

Query: 589  GGGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAH 410
              GGNIAG+VNR DVPIPEL SD A+E+             NQERHSQRCD ELKL+VA 
Sbjct: 457  AAGGNIAGLVNREDVPIPELLSDDAKEVKKWKWSVRKVKKINQERHSQRCDTELKLNVAR 516

Query: 409  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLA 230
            KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIHLA
Sbjct: 517  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA 576

Query: 229  NLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEAL 50
            NLYGG V+KLSYD RL+FVEN++ E+ DSADN LNGN WWL AEDPFQCLAAC+NL+EAL
Sbjct: 577  NLYGGGVEKLSYDGRLSFVENNIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLAEAL 636

Query: 49   KSSSPHTVISHLPIHQ 2
            KSSSPHTVISHLPIHQ
Sbjct: 637  KSSSPHTVISHLPIHQ 652


>ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
            [Sesamum indicum]
          Length = 884

 Score =  836 bits (2159), Expect = 0.0
 Identities = 421/616 (68%), Positives = 478/616 (77%), Gaps = 1/616 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFK 1667
            SD +DD+F    +  + LQ +P+G    LTKE       R FI+DPPWIS+L MK+  F+
Sbjct: 41   SDCTDDSFPGKPEKLSTLQVMPNGFQSNLTKE----SSGRGFIQDPPWISSLYMKSLLFR 96

Query: 1666 SKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
            SK +   K+EFQE ERRKY +LRRRQI+AETEAW                KKLAPNLPY+
Sbjct: 97   SKNRSEVKIEFQETERRKYYLLRRRQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYV 156

Query: 1486 KKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKL LGWFEPLR +                 APFID LPADKMAVIVMHK+M LLM G +
Sbjct: 157  KKLILGWFEPLREAIEKEQNSQRSKKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGK 216

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            ++RCVRVVEAAVQIGVAIEHEV+IHNFLEKTKK QRKE  AE+      E  ILRKRV++
Sbjct: 217  EDRCVRVVEAAVQIGVAIEHEVRIHNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKS 276

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LIRR RV E QKLV+N + KSW RDTQAKLGC LIELLT++AYVQPPV+QS ++PPD RP
Sbjct: 277  LIRRNRVIEVQKLVRNEESKSWSRDTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRP 336

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AFRH FKIA +E+GQN VK+YGVIECDP++ +GLD++V H           PKKWKGYDK
Sbjct: 337  AFRHFFKIAPRESGQNVVKKYGVIECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDK 396

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GGYLFLPSYLMRTHGSR+QQ A+K  P KQMQKVYEALDTLGNTKWRVN+RIL+VVE +W
Sbjct: 397  GGYLFLPSYLMRTHGSRKQQKAVKTVPPKQMQKVYEALDTLGNTKWRVNKRILSVVECIW 456

Query: 589  GGGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAH 410
              GGNIAG+VNR DVPIPEL SD A+E+             NQERHSQRCD ELKL+VA 
Sbjct: 457  AAGGNIAGLVNREDVPIPELLSDDAKEVKKWKWSVRKVKKINQERHSQRCDTELKLNVAR 516

Query: 409  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLA 230
            KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIHLA
Sbjct: 517  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA 576

Query: 229  NLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEAL 50
            NLYGG V+KLSYD RL+FVEN++ E+ DSADN LNGN WWL AEDPFQCLAAC+NL+EAL
Sbjct: 577  NLYGGGVEKLSYDGRLSFVENNIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLAEAL 636

Query: 49   KSSSPHTVISHLPIHQ 2
            KSSSPHTVISHLPIHQ
Sbjct: 637  KSSSPHTVISHLPIHQ 652


>ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 952

 Score =  836 bits (2159), Expect = 0.0
 Identities = 421/616 (68%), Positives = 478/616 (77%), Gaps = 1/616 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFK 1667
            SD +DD+F    +  + LQ +P+G    LTKE       R FI+DPPWIS+L MK+  F+
Sbjct: 41   SDCTDDSFPGKPEKLSTLQVMPNGFQSNLTKE----SSGRGFIQDPPWISSLYMKSLLFR 96

Query: 1666 SKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
            SK +   K+EFQE ERRKY +LRRRQI+AETEAW                KKLAPNLPY+
Sbjct: 97   SKNRSEVKIEFQETERRKYYLLRRRQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYV 156

Query: 1486 KKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKL LGWFEPLR +                 APFID LPADKMAVIVMHK+M LLM G +
Sbjct: 157  KKLILGWFEPLREAIEKEQNSQRSKKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGK 216

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            ++RCVRVVEAAVQIGVAIEHEV+IHNFLEKTKK QRKE  AE+      E  ILRKRV++
Sbjct: 217  EDRCVRVVEAAVQIGVAIEHEVRIHNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKS 276

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LIRR RV E QKLV+N + KSW RDTQAKLGC LIELLT++AYVQPPV+QS ++PPD RP
Sbjct: 277  LIRRNRVIEVQKLVRNEESKSWSRDTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRP 336

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AFRH FKIA +E+GQN VK+YGVIECDP++ +GLD++V H           PKKWKGYDK
Sbjct: 337  AFRHFFKIAPRESGQNVVKKYGVIECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDK 396

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GGYLFLPSYLMRTHGSR+QQ A+K  P KQMQKVYEALDTLGNTKWRVN+RIL+VVE +W
Sbjct: 397  GGYLFLPSYLMRTHGSRKQQKAVKTVPPKQMQKVYEALDTLGNTKWRVNKRILSVVECIW 456

Query: 589  GGGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAH 410
              GGNIAG+VNR DVPIPEL SD A+E+             NQERHSQRCD ELKL+VA 
Sbjct: 457  AAGGNIAGLVNREDVPIPELLSDDAKEVKKWKWSVRKVKKINQERHSQRCDTELKLNVAR 516

Query: 409  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLA 230
            KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIHLA
Sbjct: 517  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA 576

Query: 229  NLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEAL 50
            NLYGG V+KLSYD RL+FVEN++ E+ DSADN LNGN WWL AEDPFQCLAAC+NL+EAL
Sbjct: 577  NLYGGGVEKLSYDGRLSFVENNIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLAEAL 636

Query: 49   KSSSPHTVISHLPIHQ 2
            KSSSPHTVISHLPIHQ
Sbjct: 637  KSSSPHTVISHLPIHQ 652


>ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Erythranthe
            guttatus]
          Length = 953

 Score =  834 bits (2154), Expect = 0.0
 Identities = 416/617 (67%), Positives = 480/617 (77%), Gaps = 2/617 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFK 1667
            SDSSDDNF  NL   A LQ IP+G     TKE     ++RVFI+DPPWIS+L MKN  F+
Sbjct: 41   SDSSDDNFRGNLDKVATLQVIPNGFPSNFTKE----SKDRVFIQDPPWISSLFMKNLLFR 96

Query: 1666 SKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
            S+ + G K+EFQE+ERRKY +LRRRQ++AETEAW                KKLAPNLPY+
Sbjct: 97   SRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYV 156

Query: 1486 KKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKL LGWFEPLR +                 APFID LPADKMAVIVMHK+MGLLM G +
Sbjct: 157  KKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGK 216

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            ++RCVRVVEAAVQIGVA+E+EV+IH+FLEK KK++++EI  ES    +NE +I+RKRV++
Sbjct: 217  EDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKREIGDESQVDSSNEAVIMRKRVKS 276

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LI+R RV E  KLV++ +FKSWGRD QAKLGC LIELLT++AYVQPPV+QS ++PPD RP
Sbjct: 277  LIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRP 336

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AFRH FKIAT+  GQ  VKRYGVIECDP++ +GLD++V H           PKKWKGYD+
Sbjct: 337  AFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDR 396

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GGYLFLPSYLMRTHGSR QQDA+K    KQMQKVYEALDTLGNTKWRVN+RIL VVE +W
Sbjct: 397  GGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALDTLGNTKWRVNKRILTVVENIW 456

Query: 589  GGGGNIAGMVNRNDVPIPE-LHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVA 413
              GGNIAG+VNR D+PIPE L S+  +E              NQERHSQRCD ELKLSVA
Sbjct: 457  AAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKVKKINQERHSQRCDTELKLSVA 516

Query: 412  HKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHL 233
             KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIH+
Sbjct: 517  RKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHV 576

Query: 232  ANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEA 53
            ANLYGG V+KLSYD R+AFVEN++ E+ DSADN LNGN WWL AEDPFQCLAAC+NL EA
Sbjct: 577  ANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEA 636

Query: 52   LKSSSPHTVISHLPIHQ 2
            LKS SPHTVISHLPIHQ
Sbjct: 637  LKSPSPHTVISHLPIHQ 653


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            lycopersicum]
          Length = 1007

 Score =  820 bits (2118), Expect = 0.0
 Identities = 402/615 (65%), Positives = 481/615 (78%), Gaps = 2/615 (0%)
 Frame = -2

Query: 1840 SSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKSK 1661
            S+D+N TENL++  NLQ IP+G   VL KE      +RVFI+DPPW+S+L M N + ++K
Sbjct: 97   STDENLTENLEELVNLQKIPNGYPLVLQKE----SNKRVFIQDPPWVSSLFMNNLFVRAK 152

Query: 1660 MKKGFKLEFQEIERRK-YQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
              KG + EF+EIERR+ Y +LRRRQI+AETEAW                KKLAPNLPY+K
Sbjct: 153  QVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVK 212

Query: 1483 KLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDRD 1307
            KL LGWFEPLR +                 AP ID LPADKMAVIVMHKLMGLLM G ++
Sbjct: 213  KLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKE 272

Query: 1306 ERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQNL 1127
            ERCV+VV+AAVQIG+A+E+EV+IHNF+EKTKK Q+    A+    ++ ET+ILRKRV++L
Sbjct: 273  ERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMTGAQGQEDMSRETMILRKRVKSL 332

Query: 1126 IRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRPA 947
            I+R RV E +KL+++ + +SWGRDTQAKLGCRL+ELLTETAYVQPPV QS + PPD RPA
Sbjct: 333  IKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPA 392

Query: 946  FRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDKG 767
            FRH F+IAT++ G+N VK+YGVIECDP++  G+DR+V             PKKW+GYDKG
Sbjct: 393  FRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKG 452

Query: 766  GYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVWG 587
            GYLFLPSYLMRTHGSR+QQDA++  P KQMQ+VYEALDTLG+TKWRVN+RIL+VVET+W 
Sbjct: 453  GYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVETIWA 512

Query: 586  GGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAHK 407
            GGGNIAG+V+R DVPIPELHSD   E+             NQE HSQRCD ELKLSVA K
Sbjct: 513  GGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARK 572

Query: 406  MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLAN 227
            ++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLK+HLA+
Sbjct: 573  LRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLAS 632

Query: 226  LYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEALK 47
            LY G ++KL YD R+AFVENH+ ++LDSA NPLNGN WWLNAEDP QCLAAC+NLSEA+K
Sbjct: 633  LYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVK 692

Query: 46   SSSPHTVISHLPIHQ 2
            S SPHTVISHLPIHQ
Sbjct: 693  SLSPHTVISHLPIHQ 707


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  819 bits (2115), Expect = 0.0
 Identities = 402/615 (65%), Positives = 481/615 (78%), Gaps = 2/615 (0%)
 Frame = -2

Query: 1840 SSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKSK 1661
            S+D+N TENL++  NLQ IP+G   VL KE      +RVFI+DPPW+S+L M + + ++K
Sbjct: 105  STDENLTENLEELVNLQKIPNGYPLVLQKE----SNKRVFIQDPPWVSSLFMNSLFVRAK 160

Query: 1660 MKKGFKLEFQEIERRK-YQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
              KG + EF+EIERR+ Y +LRRRQI+AETEAW                KKLAPNLPY+K
Sbjct: 161  QVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVK 220

Query: 1483 KLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDRD 1307
            KL LGWFEPLR +                 AP ID LPADKMAVIVMHKLMGLLM G ++
Sbjct: 221  KLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKE 280

Query: 1306 ERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQNL 1127
            ERCV+VV+AAVQIG+A+E+EV+IHNF+EKTKK Q+    A+    ++ ET+ILRKRV++L
Sbjct: 281  ERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMSGAQGQEDMSRETMILRKRVKSL 340

Query: 1126 IRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRPA 947
            I+R RV E +KL+++ + +SWGRDTQAKLGCRL+ELLTETAYVQPPV QS + PPD RPA
Sbjct: 341  IKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPA 400

Query: 946  FRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDKG 767
            FRH F+IAT++ G+N VK+YGVIECDP++  G+DR+V             PKKW+GYDKG
Sbjct: 401  FRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKG 460

Query: 766  GYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVWG 587
            GYLFLPSYLMRTHGSR+QQDA++  P KQMQ+VYEALDTLG+TKWRVN+RIL+VVE++W 
Sbjct: 461  GYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWA 520

Query: 586  GGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAHK 407
            GGGNIAG+V+R DVPIPELHSD   E+             NQE HSQRCD ELKLSVA K
Sbjct: 521  GGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARK 580

Query: 406  MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLAN 227
            +KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLK+HLA+
Sbjct: 581  LKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLAS 640

Query: 226  LYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEALK 47
            LY G ++KL YD R+AFVENH+ ++LDSA NPLNGN WWLNAEDP QCLAAC+NLSEALK
Sbjct: 641  LYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALK 700

Query: 46   SSSPHTVISHLPIHQ 2
            S SPHTVISHLPIHQ
Sbjct: 701  SPSPHTVISHLPIHQ 715


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
          Length = 941

 Score =  818 bits (2113), Expect = 0.0
 Identities = 410/617 (66%), Positives = 473/617 (76%), Gaps = 2/617 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFK 1667
            SDSSDDNF  NL   A LQ                  ++RVFI+DPPWIS+L MKN  F+
Sbjct: 41   SDSSDDNFRGNLDKVATLQ----------------ESKDRVFIQDPPWISSLFMKNLLFR 84

Query: 1666 SKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
            S+ + G K+EFQE+ERRKY +LRRRQ++AETEAW                KKLAPNLPY+
Sbjct: 85   SRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYV 144

Query: 1486 KKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKL LGWFEPLR +                 APFID LPADKMAVIVMHK+MGLLM G +
Sbjct: 145  KKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGK 204

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            ++RCVRVVEAAVQIGVA+E+EV+IH+FLEK KK++++EI  ES    +NE +I+RKRV++
Sbjct: 205  EDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKREIGDESQVDSSNEAVIMRKRVKS 264

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LI+R RV E  KLV++ +FKSWGRD QAKLGC LIELLT++AYVQPPV+QS ++PPD RP
Sbjct: 265  LIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRP 324

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AFRH FKIAT+  GQ  VKRYGVIECDP++ +GLD++V H           PKKWKGYD+
Sbjct: 325  AFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDR 384

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GGYLFLPSYLMRTHGSR QQDA+K    KQMQKVYEALDTLGNTKWRVN+RIL VVE +W
Sbjct: 385  GGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALDTLGNTKWRVNKRILTVVENIW 444

Query: 589  GGGGNIAGMVNRNDVPIPE-LHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVA 413
              GGNIAG+VNR D+PIPE L S+  +E              NQERHSQRCD ELKLSVA
Sbjct: 445  AAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKVKKINQERHSQRCDTELKLSVA 504

Query: 412  HKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHL 233
             KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIH+
Sbjct: 505  RKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHV 564

Query: 232  ANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEA 53
            ANLYGG V+KLSYD R+AFVEN++ E+ DSADN LNGN WWL AEDPFQCLAAC+NL EA
Sbjct: 565  ANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEA 624

Query: 52   LKSSSPHTVISHLPIHQ 2
            LKS SPHTVISHLPIHQ
Sbjct: 625  LKSPSPHTVISHLPIHQ 641


>ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris]
            gi|59800202|sp|P69242.1|RPOT3_NICSY RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic;
            AltName: Full=NsRpoT-C; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3;
            Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
            RecName: Full=DNA-directed RNA polymerase 3A,
            chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
            Full=T7 bacteriophage-type single subunit RNA polymerase
            3A; Flags: Precursor [Nicotiana tabacum]
            gi|21425641|emb|CAC82576.3| phage-type RNA polymerase
            [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2|
            plastid RNA polymerase [Nicotiana tabacum]
            gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
            gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 977

 Score =  814 bits (2103), Expect = 0.0
 Identities = 416/676 (61%), Positives = 497/676 (73%), Gaps = 5/676 (0%)
 Frame = -2

Query: 2014 SSWGPTKHPKRPNFFFISSPEFPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSD-- 1841
            S W   K PKR NF+ I + EF K                                +   
Sbjct: 13   SQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPKTLKLPVIQMPINNNIQSQTTVC 72

Query: 1840 -SSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKS 1664
             S+D    ENL++  NLQ I +G   VLTKE      +RVFI+DPPW+S+L M + + ++
Sbjct: 73   VSTD----ENLEELVNLQKIANG---VLTKE----SNKRVFIQDPPWVSSLFMNSLFVRA 121

Query: 1663 KMKKGFKLEFQEIERRK-YQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
            K  +G + EF+EIERR+ Y +LRRRQI+AETEAW                KKLAPNLPY+
Sbjct: 122  KQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYV 181

Query: 1486 KKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKL LGWFEPLR +                 AP ID LPADKMAVIVMHKLMGLLM G +
Sbjct: 182  KKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGK 241

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            +ERCV+VV+AAVQIG+A+E+EV+IHNFLEKTKK Q+    A+S   ++ ET+ILRKRV++
Sbjct: 242  EERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKS 301

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LI+R RV E +KL+K+ + +SWGRDTQAKLGCRL+ELLTETAYVQPPV QS + PPD RP
Sbjct: 302  LIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRP 361

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AFRH F+IAT++ G++ VK+YGVIECDP++ +G+DR+V             PKKW+GYDK
Sbjct: 362  AFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDK 421

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GGYLFLPSYLMRTHGSR+QQDA++  P KQMQ+VYEALDTLG+TKWRVN+RIL+VVE++W
Sbjct: 422  GGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIW 481

Query: 589  GGGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAH 410
             GGGNIAG+V+R DVPIPELHSD   E+             NQE HSQRCD ELKLSVA 
Sbjct: 482  AGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVAR 541

Query: 409  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLA 230
            K+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIHLA
Sbjct: 542  KLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA 601

Query: 229  NLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEAL 50
            +LY G ++KL YD RLAFVENH+ ++LDSA+NPLNGN WWLNAEDPFQCLAAC+NLSEAL
Sbjct: 602  SLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEAL 661

Query: 49   KSSSPHTVISHLPIHQ 2
            KSSSPHTV SHLPIHQ
Sbjct: 662  KSSSPHTVFSHLPIHQ 677


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            [Nicotiana tabacum] gi|21425667|emb|CAC95021.2|
            chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  813 bits (2099), Expect = 0.0
 Identities = 417/674 (61%), Positives = 495/674 (73%), Gaps = 3/674 (0%)
 Frame = -2

Query: 2014 SSWGPTKHPKRPNFFFISSPEFPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDSS 1835
            S W   K PKR NF+ I + EF K                                +   
Sbjct: 13   SQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSSFPKTLKLPVIHMPINNIQSQTTVCV 72

Query: 1834 DDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKSKMK 1655
              +  ENL++  NLQ IP+G    L KE      +RVFI+DPPW+S+L M + + ++K  
Sbjct: 73   STD--ENLEELVNLQKIPNGF---LNKE----SNKRVFIQDPPWVSSLFMNSLFVRAKQV 123

Query: 1654 KGFKLEFQEIERRK-YQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMKKL 1478
            +G + EF+EIERR+ Y +LRRRQI+AETEAW                KKLAPNLPY+KKL
Sbjct: 124  QGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKL 183

Query: 1477 FLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDRDER 1301
             LGWFEPLR +                 AP ID LPADKMAVIVMHKLMGLLM G ++ER
Sbjct: 184  LLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 243

Query: 1300 CVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQNLIR 1121
            CV+VV+AAVQIG+A+E+EV+IHNFLEKTKK Q+    A+S   ++ ET+ILRKRV++LI+
Sbjct: 244  CVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIK 303

Query: 1120 RKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRPAFR 941
            R RV E +KL+K+ + +SWGRDTQAKLGCRL+ELLTETAYVQ PV QS + PPD RPAFR
Sbjct: 304  RNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFR 363

Query: 940  HTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDKGGY 761
            H FKIAT++ G+N VK+YGVIECDP++ +G+DR+V             PKKW+GYDKGGY
Sbjct: 364  HVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGY 423

Query: 760  LFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVWGGG 581
            LFLPSYLMRTHGSR+QQDA++  P KQMQ+VYEALDTLG+TKWRVN+RILNVVE++W GG
Sbjct: 424  LFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGG 483

Query: 580  GNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAHKM 404
            GNIAG+V+R DVPIPEL +SD   E+             NQE HSQRCD ELKLSVA K+
Sbjct: 484  GNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKL 543

Query: 403  KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLANL 224
            KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIHLA+L
Sbjct: 544  KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASL 603

Query: 223  YGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEALKS 44
            Y G V+KL YD RLAFVENH+H++LDSA+NPLNGN WWLNAEDPFQCLAAC+NLSEALKS
Sbjct: 604  YAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKS 663

Query: 43   SSPHTVISHLPIHQ 2
            SSPHTVISHLPIHQ
Sbjct: 664  SSPHTVISHLPIHQ 677


>ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
            [Nicotiana tomentosiformis]
          Length = 919

 Score =  810 bits (2092), Expect = 0.0
 Identities = 405/609 (66%), Positives = 479/609 (78%), Gaps = 3/609 (0%)
 Frame = -2

Query: 1819 ENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKSKMKKGFKL 1640
            ENL++  NLQ IP+G    L KE      +RVFI+DPPW+S+L M + + ++K  +G + 
Sbjct: 18   ENLEELVNLQKIPNGF---LNKE----SNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRR 70

Query: 1639 EFQEIERRK-YQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMKKLFLGWF 1463
            EF+EIERR+ Y +LRRRQI+AETEAW                KKLAPNLPY+KKL LGWF
Sbjct: 71   EFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWF 130

Query: 1462 EPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDRDERCVRVV 1286
            EPLR +                 AP ID LPADKMAVIVMHKLMGLLM G ++ERCV+VV
Sbjct: 131  EPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVV 190

Query: 1285 EAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQNLIRRKRVA 1106
            +AAVQIG+A+E+EV+IHNFLEKTKK Q+    A+S   ++ ET+ILRKRV++LI+R RV 
Sbjct: 191  QAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVV 250

Query: 1105 EAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRPAFRHTFKI 926
            E +KL+K+ + +SWGRDTQAKLGCRL+ELLTETAYVQ PV QS + PPD RPAFRH FKI
Sbjct: 251  EVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKI 310

Query: 925  ATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDKGGYLFLPS 746
            AT++ G+N VK+YGVIECDP++ +G+DR+V             PKKW+GYDKGGYLFLPS
Sbjct: 311  ATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 370

Query: 745  YLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVWGGGGNIAG 566
            YLMRTHGSR+QQDA++  P KQMQ+VYEALDTLG+TKWRVN+RILNVVE++W GGGNIAG
Sbjct: 371  YLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAG 430

Query: 565  MVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAHKMKDEEG 389
            +V+R DVPIPEL +SD   E+             NQE HSQRCD ELKLSVA K+KDEEG
Sbjct: 431  LVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEG 490

Query: 388  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLANLYGGAV 209
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKIHLA+LY G V
Sbjct: 491  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGV 550

Query: 208  KKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEALKSSSPHT 29
            +KL YD RLAFVENH+H++LDSA+NPLNGN WWLNAEDPFQCLAAC+NLSEALKSSSPHT
Sbjct: 551  EKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHT 610

Query: 28   VISHLPIHQ 2
            VISHLPIHQ
Sbjct: 611  VISHLPIHQ 619


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  761 bits (1964), Expect = 0.0
 Identities = 386/618 (62%), Positives = 461/618 (74%), Gaps = 3/618 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSG-ISQVLTKEVVINGRERV-FIRDPPWISALLMKNFY 1673
            SDSSDDNFTEN  + A +   P+G IS   +KE+    R+RV  I+DPPWIS+L +K+  
Sbjct: 40   SDSSDDNFTENPGNLATMLVTPNGGISSEFSKEL----RDRVVIIQDPPWISSLYIKSLL 95

Query: 1672 FKSKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLP 1493
            F+++ +   K+EF+E+ER KY  LRRRQI+AETEAW                KK+APNLP
Sbjct: 96   FRNRNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMVKEYKELEKEMCEKKMAPNLP 155

Query: 1492 YMKKLFLGWFEPL-RSXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTG 1316
            Y KKL LGWFEPL  +                 AP+ID LP + MAVIVMHK+MGLLM G
Sbjct: 156  YFKKLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDSLPPESMAVIVMHKIMGLLMMG 215

Query: 1315 DRDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRV 1136
             + +RC+RVVEAA+QIG AIE EV+IH FLEKTK  Q++ +++ES  +   +   LRKRV
Sbjct: 216  GKQDRCIRVVEAALQIGKAIEQEVRIHAFLEKTKH-QKEAVASESQENSCEKAANLRKRV 274

Query: 1135 QNLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDF 956
            +NL+RR R  E QKLVK+   + W R+ QAKLGC LI LLT++AYVQPPVSQS ++PPD 
Sbjct: 275  KNLVRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINLLTQSAYVQPPVSQSADSPPDV 334

Query: 955  RPAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGY 776
            RPAFRH FKIAT+E  Q  V+RYGVIECDP+I  G + +V H           PKKWKGY
Sbjct: 335  RPAFRHFFKIATREPRQTVVRRYGVIECDPLILDGFESNVKHMMVPHIPMLIPPKKWKGY 394

Query: 775  DKGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVET 596
            DKGGYLFLPSY+MRTHGSR+QQDA+K    ++MQKV+EALDTLGNTKWRVN+ IL+VVE 
Sbjct: 395  DKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEALDTLGNTKWRVNKSILSVVED 454

Query: 595  VWGGGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSV 416
            +W  GGNIAG+VNR DVP+PELHSD   EI             N E HS RCD ELKLSV
Sbjct: 455  IWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAKKNNMEMHSLRCDTELKLSV 514

Query: 415  AHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIH 236
            A  MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG+LEF+EGRPLGKSG+YWLK+H
Sbjct: 515  ARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGILEFSEGRPLGKSGLYWLKLH 574

Query: 235  LANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSE 56
            LANL+GG V+KL YD+RL+FVEN++ EV DSADNPL+GN WWL AEDPFQ LAAC+N+SE
Sbjct: 575  LANLFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGNRWWLKAEDPFQFLAACINISE 634

Query: 55   ALKSSSPHTVISHLPIHQ 2
            AL+SSSPHTVISHLPIHQ
Sbjct: 635  ALRSSSPHTVISHLPIHQ 652


>ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
            gi|508784242|gb|EOY31498.1| DNA/RNA polymerases
            superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  750 bits (1936), Expect = 0.0
 Identities = 381/618 (61%), Positives = 463/618 (74%), Gaps = 4/618 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKS 1664
            DS  DNF EN+++ +N     +   Q+L+ E       R+FI+DPPWISAL +K  Y   
Sbjct: 69   DSLHDNFVENIENPSNFLLPKAQSHQILSPE----STPRLFIQDPPWISALFLKGLY--K 122

Query: 1663 KMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
               +  K+E +EIE+RKY +LRRRQ++ ETEAW                KKLAPNLPY+K
Sbjct: 123  MTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVK 182

Query: 1483 KLFLGWFEPLR---SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGD 1313
             LFLGWFEP+R   +                 AP I+ LPADKMAVIVMHK+MGL+M G 
Sbjct: 183  GLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVM-GA 241

Query: 1312 RDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQ 1133
            ++   V+VV+AAV IGVAIE EV+IHNFLEKTK  QRK+ + E  G L+ E  IL+KRV 
Sbjct: 242  QENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQG-LSKEKEILKKRVN 300

Query: 1132 NLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFR 953
            +LIRR+R+ E QKLVKN + K WGRD QAKLG RL+ELLTETAYVQPP+ QS ++PPD +
Sbjct: 301  SLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQ 360

Query: 952  PAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYD 773
            PAFRH FK  +K+ G+  +KRYGVIECDP+I SGLDRS  H           PKKWKGYD
Sbjct: 361  PAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYD 420

Query: 772  KGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETV 593
            KGGYLFLPSY+MRTHGSR+QQDA+K   VK+MQKV+EALDTLG+TKWRVN+++L VVE++
Sbjct: 421  KGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESI 480

Query: 592  WGGGGNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSV 416
            W  GGNIAG+V+RND+PIPE   S+ + E              N+ERHSQRCD ELKLSV
Sbjct: 481  WASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSV 540

Query: 415  AHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIH 236
            A KM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG++WLKIH
Sbjct: 541  ARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIH 600

Query: 235  LANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSE 56
            LANL+ G V+KLS+D RLAFV+NHL ++ DSA+NP+NGN WWL AEDPFQCLAAC+NLSE
Sbjct: 601  LANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSE 660

Query: 55   ALKSSSPHTVISHLPIHQ 2
            +LKSSSPH+V+S+LPIHQ
Sbjct: 661  SLKSSSPHSVLSYLPIHQ 678


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  750 bits (1936), Expect = 0.0
 Identities = 381/618 (61%), Positives = 463/618 (74%), Gaps = 4/618 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKS 1664
            DS  DNF EN+++ +N     +   Q+L+ E       R+FI+DPPWISAL +K  Y   
Sbjct: 69   DSLHDNFVENIENPSNFLLPKAQSHQILSPE----STPRLFIQDPPWISALFLKGLY--K 122

Query: 1663 KMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
               +  K+E +EIE+RKY +LRRRQ++ ETEAW                KKLAPNLPY+K
Sbjct: 123  MTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVK 182

Query: 1483 KLFLGWFEPLR---SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGD 1313
             LFLGWFEP+R   +                 AP I+ LPADKMAVIVMHK+MGL+M G 
Sbjct: 183  GLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVM-GA 241

Query: 1312 RDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQ 1133
            ++   V+VV+AAV IGVAIE EV+IHNFLEKTK  QRK+ + E  G L+ E  IL+KRV 
Sbjct: 242  QENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQG-LSKEKEILKKRVN 300

Query: 1132 NLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFR 953
            +LIRR+R+ E QKLVKN + K WGRD QAKLG RL+ELLTETAYVQPP+ QS ++PPD +
Sbjct: 301  SLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQ 360

Query: 952  PAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYD 773
            PAFRH FK  +K+ G+  +KRYGVIECDP+I SGLDRS  H           PKKWKGYD
Sbjct: 361  PAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYD 420

Query: 772  KGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETV 593
            KGGYLFLPSY+MRTHGSR+QQDA+K   VK+MQKV+EALDTLG+TKWRVN+++L VVE++
Sbjct: 421  KGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESI 480

Query: 592  WGGGGNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSV 416
            W  GGNIAG+V+RND+PIPE   S+ + E              N+ERHSQRCD ELKLSV
Sbjct: 481  WASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSV 540

Query: 415  AHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIH 236
            A KM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG++WLKIH
Sbjct: 541  ARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIH 600

Query: 235  LANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSE 56
            LANL+ G V+KLS+D RLAFV+NHL ++ DSA+NP+NGN WWL AEDPFQCLAAC+NLSE
Sbjct: 601  LANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSE 660

Query: 55   ALKSSSPHTVISHLPIHQ 2
            +LKSSSPH+V+S+LPIHQ
Sbjct: 661  SLKSSSPHSVLSYLPIHQ 678


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  748 bits (1930), Expect = 0.0
 Identities = 385/616 (62%), Positives = 455/616 (73%), Gaps = 3/616 (0%)
 Frame = -2

Query: 1840 SSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKSK 1661
            S  +N  E LQD++N+Q           KE +     R+F++DPPWIS+ L  ++  +++
Sbjct: 80   SPTNNSIETLQDSSNIQV----------KESI----PRIFVQDPPWISSFLFHDWCERNR 125

Query: 1660 MK-KGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
               +  KLEF+E ERR Y +LRRRQ++AETEAW                KKLAPNLPY+K
Sbjct: 126  RTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVK 185

Query: 1483 KLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGDRD 1307
             LFLGWFEPLR +                 AP I+ LPADKMAVIVMHK+MGL+M G  +
Sbjct: 186  ALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMG-HE 244

Query: 1306 ERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQNL 1127
            E CVRVV+AAVQIG+AIE EV+IH+FLEKTK  +R +    S   L  E  ILRKRV++ 
Sbjct: 245  EGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-REKEILRKRVKSF 303

Query: 1126 IRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRPA 947
            IR+K++ E QKLVKN +   WGRDTQAKLG RLIELLTETAYVQ PV+QS + PPD RPA
Sbjct: 304  IRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPA 363

Query: 946  FRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDKG 767
            FRHTFK  TKE+GQ   ++YGVIECDP++  GLDR+  H           PKKWKGYDKG
Sbjct: 364  FRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKG 423

Query: 766  GYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVWG 587
            GYLFLPSY+MRTHGSR+QQDA+K  P +Q+QKV+EALDTLGNTKWR+NRR+L+VVE++W 
Sbjct: 424  GYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWA 483

Query: 586  GGGNIAGMVNRNDVPIPELHS-DSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAH 410
             GGN+ G+V+R +VP+PE  S +   EI             NQERHS RCD E+KLSVA 
Sbjct: 484  RGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVAR 543

Query: 409  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLA 230
            KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG+ WLKI LA
Sbjct: 544  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLA 603

Query: 229  NLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEAL 50
            NLY G V+KLSYD RLAFV+NHL +V DSADNPLNGN WWL AEDPFQCLAAC+NLSEAL
Sbjct: 604  NLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEAL 663

Query: 49   KSSSPHTVISHLPIHQ 2
            +SSSPHTVISHLPIHQ
Sbjct: 664  RSSSPHTVISHLPIHQ 679


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  743 bits (1917), Expect = 0.0
 Identities = 387/620 (62%), Positives = 450/620 (72%), Gaps = 6/620 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSG--ISQVLTKEVVINGR--ERVFIRDPPWISALLMKNF 1676
            DSS D   E+ +    + TI +   +  ++  + +++G   +RVFIRD PWISAL  K  
Sbjct: 70   DSSHDRLLEDFE----IPTINNHQKLETLIKFDQIVHGESSKRVFIRDSPWISALYWKGT 125

Query: 1675 YFKSKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNL 1496
            +  +  K   KLE ++IE+RKY +LRRRQI+ ETEAW                +KLAPNL
Sbjct: 126  HKIANKK--VKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNL 183

Query: 1495 PYMKKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMT 1319
            PY+K LFLGWFEPL+ +                 +P I+ LPADKMAVIVMHK+MGL+M 
Sbjct: 184  PYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMV 243

Query: 1318 GDRDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKR 1139
            G  D  CVRVV+AAVQIG+AIE EV+IHNFLEKTK  QRK+   +   S+  E  +LRKR
Sbjct: 244  GHEDG-CVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKR 302

Query: 1138 VQNLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPD 959
            V +LIRRKR+ E Q LV   + K W RD QAKLG RLIELLTETAYVQPPV QS   PPD
Sbjct: 303  VNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPD 362

Query: 958  FRPAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKG 779
             RPAFRH FK  TK  GQ  VK+YGVIECDP+I +GLD +  H           PKKW+G
Sbjct: 363  VRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRG 422

Query: 778  YDKGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 599
            YDKGG+LFLPSY+MRTHGSRQQQDA++  P KQMQKV+EALDTLGNTKWRVN ++L+VVE
Sbjct: 423  YDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVE 482

Query: 598  TVWGGGGNIAGMVNRNDVPIPE-LHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKL 422
             +W  GGN AG+VNR D+PIPE L SD   EI             NQERHSQRCD ELKL
Sbjct: 483  RIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKL 542

Query: 421  SVAHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLK 242
            SVA K+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEFAEGRPLGKSG+ WLK
Sbjct: 543  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLK 602

Query: 241  IHLANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNL 62
            IHLANLY G V+KLS+D RLAFVENHL E+ DSA+NP+NG  WWL AEDPFQCLAAC+NL
Sbjct: 603  IHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINL 662

Query: 61   SEALKSSSPHTVISHLPIHQ 2
            SEALKS+SPHTVISHLPIHQ
Sbjct: 663  SEALKSASPHTVISHLPIHQ 682


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  742 bits (1915), Expect = 0.0
 Identities = 380/618 (61%), Positives = 457/618 (73%), Gaps = 4/618 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKS 1664
            DS  DN  +N+++   L    +   Q+L+ E       R+FI+DPPWISAL  K  Y   
Sbjct: 63   DSLQDNIVQNIENPKKLLLPNAHSRQILSPE----SAPRIFIQDPPWISALFWKGLY--K 116

Query: 1663 KMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
               +  K+E +EIE+RKY +LRRRQ++ ETEAW                KKLAPNLPY+K
Sbjct: 117  MTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVK 176

Query: 1483 KLFLGWFEPLR---SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGD 1313
             LFLGWFEPLR   +                 AP I+ LPADK+AVIVMHK+MGL+M G 
Sbjct: 177  GLFLGWFEPLREAIAKEQKVQKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVM-GA 235

Query: 1312 RDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQ 1133
             ++  V+VV+AAV IGVAIE EV+IH+FLEKTK  QRK+I  E  G+ + E  ILRKRV 
Sbjct: 236  EEDGYVQVVQAAVHIGVAIEQEVRIHSFLEKTKNYQRKQIVDEVQGA-SKEKEILRKRVN 294

Query: 1132 NLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFR 953
            +LIRR+R+ E QKLVKN + K WGRD QAKLG RL+ELLTETAYVQPP+ QS ++P D R
Sbjct: 295  SLIRRRRLTEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVR 354

Query: 952  PAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYD 773
            PAFRH FK  ++  GQ   KRYGVIECDP+I SGLD+S  H           PKKWKGYD
Sbjct: 355  PAFRHKFKTISRGPGQKIKKRYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYD 414

Query: 772  KGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETV 593
            KGGYLFLPSY+MRTHGSR+QQ+A+K   VK M+KV+EALDTLG+TKWRVN ++L VVE++
Sbjct: 415  KGGYLFLPSYVMRTHGSRKQQEALKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESI 474

Query: 592  WGGGGNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSV 416
            W  GGNIAG+V+RND+PIPE  +S+ + EI             N+ERHSQRCD ELKLSV
Sbjct: 475  WASGGNIAGLVDRNDIPIPEKPYSEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSV 534

Query: 415  AHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIH 236
            A KM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG++WLKIH
Sbjct: 535  ARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIH 594

Query: 235  LANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSE 56
            LANLY G V+KLS+D RLAFV+NHL E+ DSA+NP+NGN WWL AEDPFQCLAACMNLSE
Sbjct: 595  LANLYSGGVEKLSHDGRLAFVDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSE 654

Query: 55   ALKSSSPHTVISHLPIHQ 2
            ALKS+SPH++IS+LPIHQ
Sbjct: 655  ALKSTSPHSMISYLPIHQ 672


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  742 bits (1915), Expect = 0.0
 Identities = 380/618 (61%), Positives = 457/618 (73%), Gaps = 4/618 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFKS 1664
            DS  DN  +N+++   L    +   Q+L+ E       R+FI+DPPWISAL  K  Y   
Sbjct: 63   DSLQDNIVQNIENPKKLLLPNAHSRQILSPE----SAPRIFIQDPPWISALFWKGLY--K 116

Query: 1663 KMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYMK 1484
               +  K+E +EIE+RKY +LRRRQ++ ETEAW                KKLAPNLPY+K
Sbjct: 117  MTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVK 176

Query: 1483 KLFLGWFEPLR---SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMTGD 1313
             LFLGWFEPLR   +                 AP I+ LPADK+AVIVMHK+MGL+M G 
Sbjct: 177  GLFLGWFEPLREAIAKEQKVQKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVM-GA 235

Query: 1312 RDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQ 1133
             ++  V+VV+AAV IGVAIE EV+IH+FLEKTK  QRK+I  E  G+ + E  ILRKRV 
Sbjct: 236  EEDGYVQVVQAAVHIGVAIEQEVRIHSFLEKTKNYQRKQIVDEVQGA-SKEKEILRKRVN 294

Query: 1132 NLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFR 953
            +LIRR+R+ E QKLVKN + K WGRD QAKLG RL+ELLTETAYVQPP+ QS ++P D R
Sbjct: 295  SLIRRRRLTEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVR 354

Query: 952  PAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYD 773
            PAFRH FK  ++  GQ   KRYGVIECDP+I SGLD+S  H           PKKWKGYD
Sbjct: 355  PAFRHKFKTISRGPGQKIKKRYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYD 414

Query: 772  KGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETV 593
            KGGYLFLPSY+MRTHGSR+QQ+A+K   VK M+KV+EALDTLG+TKWRVN ++L VVE++
Sbjct: 415  KGGYLFLPSYVMRTHGSRKQQEALKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESI 474

Query: 592  WGGGGNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSV 416
            W  GGNIAG+V+RND+PIPE  +S+ + EI             N+ERHSQRCD ELKLSV
Sbjct: 475  WASGGNIAGLVDRNDIPIPEKPYSEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSV 534

Query: 415  AHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIH 236
            A KM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SG++WLKIH
Sbjct: 535  ARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIH 594

Query: 235  LANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSE 56
            LANLY G V+KLS+D RLAFV+NHL E+ DSA+NP+NGN WWL AEDPFQCLAACMNLSE
Sbjct: 595  LANLYSGGVEKLSHDGRLAFVDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSE 654

Query: 55   ALKSSSPHTVISHLPIHQ 2
            ALKS+SPH++IS+LPIHQ
Sbjct: 655  ALKSTSPHSMISYLPIHQ 672


>ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Populus
            euphratica]
          Length = 982

 Score =  741 bits (1913), Expect = 0.0
 Identities = 385/620 (62%), Positives = 449/620 (72%), Gaps = 6/620 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSG--ISQVLTKEVVINGR--ERVFIRDPPWISALLMKNF 1676
            DSS D   E+ +    + TI +   +  ++  + +++G   +RVFIRD PWISAL  K  
Sbjct: 70   DSSHDRLLEDFE----IPTINNHQKLETLIKFDQIVHGESSKRVFIRDSPWISALYWKGT 125

Query: 1675 YFKSKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNL 1496
            +  +  K   KLE ++IE+RKY +LRRRQI+ ETEAW                +KLAPNL
Sbjct: 126  HKIANKK--VKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNL 183

Query: 1495 PYMKKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMT 1319
            PY+K LFLGWFEPL+ +                 +P+I+ LPADKMAVIVMHK+MGL+M 
Sbjct: 184  PYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPYIELLPADKMAVIVMHKMMGLVMV 243

Query: 1318 GDRDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKR 1139
            G  D  CVRVV+AAVQIG+AIE EV+IHNFLEKTK  QRK+   +   S+  E  +LRKR
Sbjct: 244  GHEDG-CVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKR 302

Query: 1138 VQNLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPD 959
            V +LIRRKR+ E Q LV   + K W RD QAKLG RLIELLTETAYVQPP  QS   PPD
Sbjct: 303  VNSLIRRKRLMEVQNLVIQDETKPWSRDKQAKLGSRLIELLTETAYVQPPADQSEGIPPD 362

Query: 958  FRPAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKG 779
             RPAFRH FK  TK  GQ  VK+YGVIECDP+I +GLD +  H           PKKW+G
Sbjct: 363  VRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRG 422

Query: 778  YDKGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 599
            YDKGG+LFLPSY+MRTHGSRQQQDA++  P KQMQKV+EALDTLGNTKWRVN ++L+VVE
Sbjct: 423  YDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVE 482

Query: 598  TVWGGGGNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKL 422
             +W  GGN AG+VNR D+PIPE   SD   EI             NQERHSQRCD ELKL
Sbjct: 483  RIWASGGNNAGLVNRGDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKL 542

Query: 421  SVAHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLK 242
            SVA K+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEFAEGRPLGKSG+ WLK
Sbjct: 543  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLK 602

Query: 241  IHLANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNL 62
            IHLANLY G V+KLS+D RLAFVENHL E+ DSA+NP+NG  WWL AEDPFQCLAAC+NL
Sbjct: 603  IHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINL 662

Query: 61   SEALKSSSPHTVISHLPIHQ 2
            SEALKS+SPHTVISHLPIHQ
Sbjct: 663  SEALKSTSPHTVISHLPIHQ 682


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score =  740 bits (1911), Expect = 0.0
 Identities = 388/620 (62%), Positives = 450/620 (72%), Gaps = 6/620 (0%)
 Frame = -2

Query: 1843 DSSDDNFTENLQDTANLQTIPSG--ISQVLTKEVVINGR--ERVFIRDPPWISALLMKNF 1676
            DSS D   E+ +    + TI S   +  ++  + +++G   +RVFI+DPPWISA   K  
Sbjct: 71   DSSHDRLLEDFE----IPTICSHQKLETLIKFDQIMHGESSKRVFIQDPPWISAHFWKGV 126

Query: 1675 YFKSKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNL 1496
            Y  +  K   K+EF++IE+RKY +LRRRQI+ ETEAW                +KLAPNL
Sbjct: 127  YKIANKK--VKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNL 184

Query: 1495 PYMKKLFLGWFEPLR-SXXXXXXXXXXXXXXXXXAPFIDCLPADKMAVIVMHKLMGLLMT 1319
            PY+K L LGWFEPL+ +                 +P I+ LPADKMAVIVMHK+MGLLM 
Sbjct: 185  PYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMV 244

Query: 1318 GDRDERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKR 1139
            G  D  CVRVV+AAVQIG+AIE EV+IHNFLEKTK  QRK+   +   S+  E  +LRKR
Sbjct: 245  GHEDG-CVRVVQAAVQIGMAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKR 303

Query: 1138 VQNLIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPD 959
            V +LIRRKR+ E Q LVK  + K W R TQAKLG RLIELLTETAYVQPPV+QS + PPD
Sbjct: 304  VNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPD 363

Query: 958  FRPAFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKG 779
             RPAFRH FK  TK  GQ  VK+YGVIECDP+I +GLD +  H           PKKWKG
Sbjct: 364  VRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKG 423

Query: 778  YDKGGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 599
            YDKGG+LFLPSY+MRTHGSRQQQ A++  P KQMQKV+EALDTLGNTKWRVNRR+L+VVE
Sbjct: 424  YDKGGHLFLPSYIMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVE 483

Query: 598  TVWGGGGNIAGMVNRNDVPIPEL-HSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKL 422
             +W  GGNIAG+V+R D+PIPE   SD   EI             NQERHSQRCD ELKL
Sbjct: 484  RIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKL 543

Query: 421  SVAHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLK 242
            SVA K+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEF EGRPLGKSG+ WLK
Sbjct: 544  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLK 603

Query: 241  IHLANLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNL 62
            IHLANLY G V+KLS+D RLAFVENHL E+ DSA NP+NG  WWL AEDPFQCLAAC+NL
Sbjct: 604  IHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINL 663

Query: 61   SEALKSSSPHTVISHLPIHQ 2
            SEAL S+SPHTVISHLPIHQ
Sbjct: 664  SEALNSASPHTVISHLPIHQ 683


>ref|XP_004144791.2| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Cucumis
            sativus] gi|700205944|gb|KGN61063.1| hypothetical protein
            Csa_2G036610 [Cucumis sativus]
          Length = 975

 Score =  739 bits (1909), Expect = 0.0
 Identities = 377/616 (61%), Positives = 455/616 (73%), Gaps = 1/616 (0%)
 Frame = -2

Query: 1846 SDSSDDNFTENLQDTANLQTIPSGISQVLTKEVVINGRERVFIRDPPWISALLMKNFYFK 1667
            +DS  +NFTE L ++ NLQ   S I Q+   E      +R+FI+DPPWI++L +K  Y  
Sbjct: 68   ADSVHENFTETLDNSMNLQIPISEIHQITRGE----SSKRIFIQDPPWIASLFLKGLY-- 121

Query: 1666 SKMKKGFKLEFQEIERRKYQVLRRRQIQAETEAWXXXXXXXXXXXXXXXXKKLAPNLPYM 1487
              ++K  KLEF EIE+RKY +LRRRQI+AETEAW                KKLAPNLPY+
Sbjct: 122  KCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYV 181

Query: 1486 KKLFLGWFEPLRSXXXXXXXXXXXXXXXXXA-PFIDCLPADKMAVIVMHKLMGLLMTGDR 1310
            KKLFLGWFEPL++                   P I+ L ADKMAVIVM+K+MGLLM   +
Sbjct: 182  KKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQ 241

Query: 1309 DERCVRVVEAAVQIGVAIEHEVKIHNFLEKTKKSQRKEISAESPGSLTNETIILRKRVQN 1130
            D  CV+VV+AAVQIG AIE EV+I + LEK + +QR ++ A++   LT E  +LRK+V  
Sbjct: 242  DG-CVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE-CLTKEKEVLRKQVNG 299

Query: 1129 LIRRKRVAEAQKLVKNHKFKSWGRDTQAKLGCRLIELLTETAYVQPPVSQSTENPPDFRP 950
            LIRR+++ E QKL+K  +FK+WGRDTQAKLG RLIELL E+A++QPPVSQS ++PPD RP
Sbjct: 300  LIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRP 359

Query: 949  AFRHTFKIATKEAGQNPVKRYGVIECDPVIHSGLDRSVNHXXXXXXXXXXXPKKWKGYDK 770
            AF H FK   K  GQN VK+YGV+ECDP++ +GLDR+  H           PKKWKGYDK
Sbjct: 360  AFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDK 419

Query: 769  GGYLFLPSYLMRTHGSRQQQDAIKCAPVKQMQKVYEALDTLGNTKWRVNRRILNVVETVW 590
            GG+ FLPSY+MRTHGS +QQDA+K    KQMQKV+EALD LG+TKWRVNR +L+VVE++W
Sbjct: 420  GGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLW 479

Query: 589  GGGGNIAGMVNRNDVPIPELHSDSAEEIXXXXXXXXXXXXXNQERHSQRCDIELKLSVAH 410
              GGN AG+V+R DVPIPE       E+             NQE HSQRCD+ELKLSVA 
Sbjct: 480  AQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVAR 539

Query: 409  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLA 230
            KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSG++WLKIHLA
Sbjct: 540  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLA 599

Query: 229  NLYGGAVKKLSYDQRLAFVENHLHEVLDSADNPLNGNCWWLNAEDPFQCLAACMNLSEAL 50
            NLY G V+KLSYD+RLAFV++HL  + DSA NP+NG+ WWL AEDPFQCLAACMNLSEAL
Sbjct: 600  NLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEAL 659

Query: 49   KSSSPHTVISHLPIHQ 2
            KSS+PHTVIS+LPIHQ
Sbjct: 660  KSSAPHTVISYLPIHQ 675