BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00002002
         (2340 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP05091.1| unnamed protein product [Coffea canephora]            839   0.0  
ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,...   704   0.0  
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   703   0.0  
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   701   0.0  
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   699   0.0  
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   688   0.0  
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   669   0.0  
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   667   0.0  
ref|XP_012858574.1| PREDICTED: RNA polymerase sigma factor sigE,...   662   0.0  
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   657   0.0  
ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,...   655   0.0  
ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,...   655   0.0  
ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,...   655   0.0  
ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,...   652   0.0  
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   648   0.0  
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     648   0.0  
ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   647   0.0  
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   646   0.0  
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   644   0.0  
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   644   0.0  

>emb|CDP05091.1| unnamed protein product [Coffea canephora]
          Length = 530

 Score =  839 bits (2168), Expect = 0.0
 Identities = 442/531 (83%), Positives = 464/531 (87%), Gaps = 13/531 (2%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSAARSPLGLNAKLATRISQPRRPSL+ FK GKTKNAALVAPRESLSLPVEGS
Sbjct: 1    MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLVPFKNGKTKNAALVAPRESLSLPVEGS 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
            N+N+K LKR VK PERVKAVS  E A ST E+DYNEAAAKLENIYKLSPAT VSD EV +
Sbjct: 61   NVNEKRLKRVVKRPERVKAVSALEAASSTLELDYNEAAAKLENIYKLSPATKVSDMEVND 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
            LGM          KEAN E EKGTNYT+VRSP KKSKRLSLD+RV+ RKKRDSE I+SSQ
Sbjct: 121  LGMKRDQQRRKRMKEANVEAEKGTNYTVVRSPRKKSKRLSLDKRVTLRKKRDSEAISSSQ 180

Query: 1461 KRKSSE-------------DDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSW 1321
            KRKSSE             DDEDEKINRL+REYSGSTDFTSLDWKKMKIPPVLPSSEHSW
Sbjct: 181  KRKSSEGDEDEEINRKSSEDDEDEKINRLLREYSGSTDFTSLDWKKMKIPPVLPSSEHSW 240

Query: 1320 LFKLMQPMKAIIRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHN 1141
            LFKLMQPMKAII+VKE+L NDLGREPTDGELAEATNLDVLHLR+DI+VG+AARNKLIKHN
Sbjct: 241  LFKLMQPMKAIIQVKENLPNDLGREPTDGELAEATNLDVLHLRKDIKVGQAARNKLIKHN 300

Query: 1140 LRLVLFVLNKYFQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAII 961
            LRLVLFV+NKYFQDF NGPKFQDLCQAG KGLITAIDRFEPKRKFRLSTYGLFWIRHAII
Sbjct: 301  LRLVLFVMNKYFQDFTNGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAII 360

Query: 960  RSMTLSSFTKVSFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVS 781
            RSMTLSS TKVSFGL+SVR+EIQRAKLEL+FELQRMPT+DEIIERVGISP RYHEVMRVS
Sbjct: 361  RSMTLSSLTKVSFGLDSVRIEIQRAKLELLFELQRMPTEDEIIERVGISPERYHEVMRVS 420

Query: 780  KPISSLHARHTTTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQ 601
             PI SLHARH+ TQEEFINGITDVDGVEG+K                  LKPKESLVIRQ
Sbjct: 421  NPILSLHARHSATQEEFINGITDVDGVEGEK-RRQPALLRLALDDVLDSLKPKESLVIRQ 479

Query: 600  RYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            RYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY
Sbjct: 480  RYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 530


>ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Sesamum indicum]
          Length = 518

 Score =  704 bits (1816), Expect = 0.0
 Identities = 369/519 (71%), Positives = 424/519 (81%), Gaps = 1/519 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSAAR+PLGL+A+  TR+S  RR  +LSFK  K KN AL+APRES++LP+E  
Sbjct: 1    MGVVTVSSSAARTPLGLDARYLTRVSLCRRQVILSFKNDKNKNIALIAPRESVALPLEAK 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
               +K  ++  K  ERV AVS  E +PST ++DYNEAAAKLE IYK SPAT+VS  EVK+
Sbjct: 61   KEKEKRSRKVKKLVERVSAVSTDEASPSTIDLDYNEAAAKLEYIYKRSPATTVSLEEVKD 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVI-TSS 1465
              +           EA EE EK T   +VRS  KK +RL+L++R++ +  ++ + + +SS
Sbjct: 121  QRVKRRRPLRKRTGEA-EEAEKKTADDVVRSKRKKERRLTLEKRIALKTNKEVDFLASSS 179

Query: 1464 QKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAII 1285
            QKRK  ++DEDEKI+RLVR+YS STD  SLDWKKMKIPPVLPSSEH+WLFKLMQPMKAI+
Sbjct: 180  QKRKQRKNDEDEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAIL 239

Query: 1284 RVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYF 1105
            +VKE+LQNDLGRE TD ELAEAT  + + LR+ +EVGRAARNKLIKHNLRLVLFV+NKYF
Sbjct: 240  QVKENLQNDLGREVTDDELAEATKTNAVQLRKQLEVGRAARNKLIKHNLRLVLFVMNKYF 299

Query: 1104 QDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVS 925
            QDF+NGP+FQDLCQAG KGLITAIDRFEPKRKFRLSTY LFWIRHAIIRSMTLSSFTKVS
Sbjct: 300  QDFSNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYSLFWIRHAIIRSMTLSSFTKVS 359

Query: 924  FGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTT 745
            FGLESVRVEIQ+AKLEL+FELQR+P+D+EI+ RVGISP RYHEVMRVSKPISSLHARH  
Sbjct: 360  FGLESVRVEIQKAKLELLFELQRLPSDEEIVNRVGISPERYHEVMRVSKPISSLHARHAV 419

Query: 744  TQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 565
            TQEEFINGI+DVD VEGDK                  LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 420  TQEEFINGISDVDDVEGDK-RRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 478

Query: 564  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            GEIAGNLNISREMVRKHEVKALMKLKHPAR+DYLRRY+Y
Sbjct: 479  GEIAGNLNISREMVRKHEVKALMKLKHPARIDYLRRYIY 517


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  703 bits (1815), Expect = 0.0
 Identities = 365/520 (70%), Positives = 421/520 (80%), Gaps = 2/520 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSA+RSPLGL+   +  +   +RP ++SFK  KTK   LVAP+ES+SLP+E S
Sbjct: 1    MGVVTVSSSASRSPLGLSTSFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQ-ETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVK 1645
              N+K  +R  K  ERV AVS   E +PST E+DY+EAAAKLE+IYK S  T  SDTE K
Sbjct: 61   KENEKRSRRVSKRTERVHAVSIDIEASPSTLELDYSEAAAKLESIYKRSLETDSSDTEAK 120

Query: 1644 ELGMXXXXXXXXXXK-EANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITS 1468
            +  +            E NEE +KG    +V++  KKSKRL+LD+R++  K ++ E++ S
Sbjct: 121  DHQIVKRRQRTRKRIIEGNEEAKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVAS 180

Query: 1467 SQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAI 1288
            SQKR+  ED EDEKI++LVREYSG+TD  SLDWKKMKIPPVLPSSEH+WLFKLMQPMKAI
Sbjct: 181  SQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAI 240

Query: 1287 IRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKY 1108
            ++VKE+LQNDLGREPTD E+AEATN+D   LR+++EVGRAARNKLIKHNLRLVLFV+NKY
Sbjct: 241  LQVKENLQNDLGREPTDAEVAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 1107 FQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKV 928
            FQDFANGPKFQDLCQAG KGLITAIDRFEP RKFRLSTYGLFWIRHAIIRSMT SSFTKV
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKV 360

Query: 927  SFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHT 748
             FGLES+RVEIQ+AKL+L+FELQRMPTD+EIIERV +SP RYHEVM+VSKP+ SLHARH 
Sbjct: 361  PFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHM 420

Query: 747  TTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 568
            TTQEEFINGITDVDGV+G K                  LKPKESLVIRQRYGLDGKG+RT
Sbjct: 421  TTQEEFINGITDVDGVDGVK-RKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRT 479

Query: 567  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            LGEIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRY++
Sbjct: 480  LGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIF 519


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  701 bits (1809), Expect = 0.0
 Identities = 364/520 (70%), Positives = 420/520 (80%), Gaps = 2/520 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSA+RSPLGL+ + +  +   +RP ++SFK  KTK   LVAP+ES+SLP+E S
Sbjct: 1    MGVVTVSSSASRSPLGLSTRFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQ-ETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVK 1645
              N+K  +R  K  ERV AVS   E + S  E+DY+EAAAKLE+IYK S  T  SDTE K
Sbjct: 61   KENEKRSRRVSKRTERVHAVSIDIEASTSPLELDYSEAAAKLESIYKRSLETDSSDTEAK 120

Query: 1644 ELGMXXXXXXXXXXK-EANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITS 1468
            +  +            E +EET+KG    +V++  KKSKRL+LD+R++  K ++ E++ S
Sbjct: 121  DHQIVKRRQRTRKRIVEGDEETKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVAS 180

Query: 1467 SQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAI 1288
            SQKR+  ED EDEKI++LVREYSG+TD  SLDWKKMKIPPVLPSSEH+WLFKLMQPMKAI
Sbjct: 181  SQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAI 240

Query: 1287 IRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKY 1108
            ++VKE+LQNDLGREPTD E AEATN+D   LR+++EVGRAARNKLIKHNLRLVLFV+NKY
Sbjct: 241  LQVKENLQNDLGREPTDAEAAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 1107 FQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKV 928
            FQDFANGPKFQDLCQAG KGLITAIDRFEP RKFRLSTYGLFWIRHAIIRSMT SSFTKV
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKV 360

Query: 927  SFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHT 748
             FGLES+RVEIQ+AKL+L+FELQRMPTD+EIIERV +SP RYHEVM+VSKP+ SLHARH 
Sbjct: 361  PFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHM 420

Query: 747  TTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 568
            TTQEE INGITDVDGV+GDK                  LKPKESLVIRQRYGLDGKGDRT
Sbjct: 421  TTQEELINGITDVDGVDGDK-RRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 479

Query: 567  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            LGEIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRY++
Sbjct: 480  LGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIF 519


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  699 bits (1805), Expect = 0.0
 Identities = 359/518 (69%), Positives = 424/518 (81%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSA+RSPLGL+++ +TR+   +RP ++SFK  KTKN  L+AP+ES+SL +E S
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              N+K  +R  K  ERV AV+  E +PST E+DY+EAAAKLE+IYK S  T+ S+TEV++
Sbjct: 61   KENEKRSRRVSKRSERVHAVAI-EASPSTLELDYSEAAAKLESIYKRSLETASSNTEVQD 119

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
              +           E +EE +K     +V++  K SKRL+LD+R++  K ++ E++ SS+
Sbjct: 120  HLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSE 179

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
            +RK  ED EDEKI++LVREYSG+TD  SLDWKKMKIPPVLPSSEH WLFKLMQPMKAI++
Sbjct: 180  RRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQ 239

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
            VKE+LQNDLGREPTDGE+AEATN+D   LR+ +EVGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFANG +FQDLCQAG KGLITAIDRFEP RKFRLSTYGLFWIRHAIIRSMT SSFTKV F
Sbjct: 300  DFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPF 359

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLES+RVEIQ+AKLEL+FELQR+PTD+EII RVG+SP RYHEVM+VSKP+SSLHAR+ TT
Sbjct: 360  GLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTT 419

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEE INGITDVDGV+GDK                  LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEELINGITDVDGVDGDK-RKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            EIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRY++
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  688 bits (1776), Expect = 0.0
 Identities = 355/518 (68%), Positives = 420/518 (81%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSA+RSPLGL+++ + R+   +RP ++SFK   TKN  LV+P+ES+S P+E S
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              N+K  +R  K  ERV AV+  E  PST E+DY+EAAAKLE+IYK S  T+  +TEVK+
Sbjct: 61   KENEKRSRRVSKRTERVHAVTI-EAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKD 119

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
              +           E++EE +K     +V++  KKSKRL+LD+R++  K ++ +++ SS+
Sbjct: 120  HLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSE 179

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
            +RK +ED EDEKI++LVREYSG+TD  SLDWKKMKIPPVLPSSEH+WLFKLMQPMKAI++
Sbjct: 180  RRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 239

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
            VKE+LQNDLGREPTDGE+AEATN+D   LR+ +E GRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFAN  +FQDLCQAG KGLITAIDRFEP RKFRLSTYGLFWIRHAIIR MT SSFTKV F
Sbjct: 300  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPF 359

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLES+RVEIQ+AKLEL+FELQR+PTDDEII+RVG SP RYHEVM+VSKPI SLHAR+ TT
Sbjct: 360  GLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTT 419

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEE INGITDVDGV+GDK                  LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEELINGITDVDGVDGDK-RKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            EIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRY++
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  669 bits (1726), Expect = 0.0
 Identities = 349/520 (67%), Positives = 412/520 (79%), Gaps = 2/520 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAA--RSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVE 1828
            MGVVTVSSSA+  R+P GLNAK +   +  RRP +L+FK  K KN ALV P E + LP+E
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1827 GSNMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEV 1648
             S  +KK L+RA K  +RVKAVS  E +P + E+DYNEAAAKLENIYKLSPAT VS+ E 
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 1647 KELGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITS 1468
             E  +            A+++ EK  +  +VR   KK KRLSL++R++  K +  + + S
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS 180

Query: 1467 SQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAI 1288
             QK++ S++ EDE I+ LVREYS STD  SLDWKKMKIPPVLP SEH+WLFKLMQPMK +
Sbjct: 181  IQKKRDSKN-EDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGL 239

Query: 1287 IRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKY 1108
            + VK++LQ DLGREPTDGELAEA ++  + +R  +EVG+AARNKLIKHNLRLVLFV+NKY
Sbjct: 240  LEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKY 299

Query: 1107 FQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKV 928
            FQ+FANGPKFQDLCQAG KGLITAIDRFEPKR FRLSTYGLFWIRHAI+RSMTLSSFT+V
Sbjct: 300  FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRV 359

Query: 927  SFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHT 748
            SFGLESVRVEIQRAKLEL+F+LQR+PT++EIIE+VGISP RYHEVMR SK + SLHARH 
Sbjct: 360  SFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHA 419

Query: 747  TTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 568
            TTQEE+INGITDV+GV GD+                  LKPKESLV+RQRYGLDGKGDRT
Sbjct: 420  TTQEEYINGITDVEGVGGDR-GRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRT 478

Query: 567  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            LGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLR+Y++
Sbjct: 479  LGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF 518


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  667 bits (1721), Expect = 0.0
 Identities = 350/519 (67%), Positives = 413/519 (79%), Gaps = 2/519 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSA+R+PLGL+ KL  + S  R+P +++FKT +    ALVAP+E + LP+E  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSV-SDTEVK 1645
              ++K L +A K  + VK+ +    +P T EVDYNEAAAKLEN+YK SP T   SD E  
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 1644 ELGMXXXXXXXXXXKEAN-EETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITS 1468
            +  M           E++ ++ E  T+ T+VR+ TKK+KRLSL++RV+ +  +D +VI+S
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 1467 SQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAI 1288
              +++ S  +E+EKI  LVREYS STD  SLDWKKMKIPPVL SSEH+WLFKLMQPMK +
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1287 IRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKY 1108
            + VKE+LQ DLGREPT+GELAEATN+ V+ +++ +EVGRAAR+KLIKHNLRLVLFV+NKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 1107 FQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKV 928
            FQDFANGPKFQDLCQAG KGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSFT+V
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 360

Query: 927  SFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHT 748
            SFGLESVR EIQ+AKL ++F L+RMPT+DEIIE+VGISP RYHEVMR SKP+ SLH+RHT
Sbjct: 361  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 420

Query: 747  TTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 568
            TTQEEFINGITDVDGVEGD                   LKPKESLVIRQRYGLDGKGDRT
Sbjct: 421  TTQEEFINGITDVDGVEGDN-RQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 479

Query: 567  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 480  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 518


>ref|XP_012858574.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Erythranthe guttatus]
            gi|604299780|gb|EYU19623.1| hypothetical protein
            MIMGU_mgv1a020453mg [Erythranthe guttata]
          Length = 515

 Score =  662 bits (1707), Expect = 0.0
 Identities = 345/518 (66%), Positives = 412/518 (79%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVS+SA+R+ LGLN +  TR+S  RRP + +FK  K K   L++PRES +LP+E +
Sbjct: 1    MGVVTVSTSASRTSLGLNERYLTRVSILRRPVVFAFKNDKIKKIVLISPRESAALPLEAT 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              N+K L++  K  ERV AVS  E  PST ++DYNEAAAKLE I+K SP   +S  EVK+
Sbjct: 61   KDNEKRLRKVKKRAERVNAVSTDEAPPSTIDLDYNEAAAKLEYIFKQSPTVEISVDEVKD 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
            + +           E  +E EK  +  +VRS   K +RL+L++R++ R K++ E     Q
Sbjct: 121  VRVKRRQPRKRT--EYADEAEKIAD-NVVRSRRSKDRRLNLEKRIALRTKKEDESTAIFQ 177

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
            +RK+ ++DEDEKI+RLVR+YS S+D  SLDWKKMKIPPVLPS+EH WLFKLMQP+KAI+ 
Sbjct: 178  RRKTGKNDEDEKIDRLVRDYSASSDLVSLDWKKMKIPPVLPSAEHVWLFKLMQPVKAILD 237

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
            VKE ++N+LGREPTD +LA A N+D + LR+ +E+GRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 238  VKETIENNLGREPTDEKLATAINMDTVQLRKQLEIGRAARNKLIKHNLRLVLFVMNKYFQ 297

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DF+NG +FQDLCQAGAKGLITAIDRFEPKRK RLSTYGLFWIRH+IIRSMTLSSFTKVSF
Sbjct: 298  DFSNGSRFQDLCQAGAKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTKVSF 357

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEI++AKLELMFEL+R+PTD+EI+ RVGIS  RYHEVMRVSKPI SLHARH+ T
Sbjct: 358  GLESVRVEIRKAKLELMFELKRLPTDEEIVGRVGISQERYHEVMRVSKPIISLHARHSVT 417

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEEFINGITDVDGVEGD+                  LKPKE+LVIRQRYGLDGKGDRTLG
Sbjct: 418  QEEFINGITDVDGVEGDR-RKQPALLRLALDDVLDSLKPKENLVIRQRYGLDGKGDRTLG 476

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            EIAGNLNISREMVRK+EVKALMKLKH ARVDYLRRYV+
Sbjct: 477  EIAGNLNISREMVRKYEVKALMKLKHRARVDYLRRYVF 514


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  657 bits (1695), Expect = 0.0
 Identities = 342/517 (66%), Positives = 407/517 (78%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVV+VSSSAAR+PLGL+ K +T+    RRP  ++FK  K+ N ALV P+E + LP+E +
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              + K   +A K P+ V  V   + +P T EVDYNEAAAKLENIYKLSPAT  SD E  E
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
              +          KE++E+     +  +VR+ T + KRLSLD R++ +K R+ + + S +
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
            ++KSSE+ E EKI+RLVR+YS STD  SLDW+KMKIPPVLPS EH+WLFKLMQPMKA+++
Sbjct: 181  RKKSSEN-ESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQ 239

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
             KE+LQ DLGR+PT+ ELAEATN+    +R+ +EVG+AARNKLIKHNLRLVLF +NKYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQ 299

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFANGP+FQDLCQAG KGLITAIDRFEP+R+FRLSTY LFWIRHAIIRSMTLSSFT+VSF
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSF 359

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEIQRAKLEL+FEL R PT++EII++VGISP RY EVMR SKP++SLH+RH+ T
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVT 419

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEEFINGITD+DGV GD                   LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEEFINGITDIDGVGGD-HRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  655 bits (1689), Expect = 0.0
 Identities = 346/521 (66%), Positives = 411/521 (78%), Gaps = 4/521 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVS+SAAR+PLGL+ K  ++ S  R+P +++FKT ++   ALVAP+  + LP+E  
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTS-EVDYNEAAAKLENIYKLSPATSVSDTEVK 1645
              ++K + +A K  + VK+ +    AP T+ EVDYNEAAAKLEN+YK SP    +D +V+
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIE-ADVDVE 119

Query: 1644 E---LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVI 1474
            +   L            +  +E+ EK T+  +VRS TKK+KRL+LD+RV+ +  +D +V+
Sbjct: 120  DADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVV 179

Query: 1473 TSSQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMK 1294
            +S QKRK  ++ E EKI  LVREYS STD  SLDWKKMKIPPVL SSEH+WLFKLMQPMK
Sbjct: 180  SSVQKRKDQKN-ETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMK 238

Query: 1293 AIIRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLN 1114
             +  V+E LQ DLG EPT+GELAEATN+ V+ +++  EVGRAARNKLIKHNLRLVLFV+N
Sbjct: 239  GLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVIN 298

Query: 1113 KYFQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFT 934
            KYFQDFANGPKFQDLCQAG +GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFT
Sbjct: 299  KYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFT 358

Query: 933  KVSFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHAR 754
            +VSFGLESVR EIQ+AKLE+MF L+RMPTD+EIIE+VGISP RYHEVMR SKP+SSLH+R
Sbjct: 359  RVSFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSR 418

Query: 753  HTTTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGD 574
            H TTQEE+INGITDVDGVEGD                   LKPKESLVIRQRYGLDGKGD
Sbjct: 419  HATTQEEYINGITDVDGVEGDN-RRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGD 477

Query: 573  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 478  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 518


>ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Malus domestica]
          Length = 519

 Score =  655 bits (1689), Expect = 0.0
 Identities = 347/520 (66%), Positives = 409/520 (78%), Gaps = 3/520 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVS+SAAR+PLGL+AK  ++ S  R+P +++FKT ++   ALVAP+  + LP+E  
Sbjct: 1    MGVVTVSTSAARTPLGLSAKSTSQRSTFRKPLIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTS-EVDYNEAAAKLENIYKLSPATSVS-DTEV 1648
              ++K + +A K  + VK+ +    AP T+ EVDYNEAAAKLEN+YK SP      D E 
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1647 KELGMXXXXXXXXXXKEAN-EETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVIT 1471
             +  M           E+N E+ EK T+  +VRS TKK+KRL+LD+RVS +  +D +V++
Sbjct: 121  ADGLMRRGRKRRKKTSESNHEKEEKRTSDIVVRSKTKKAKRLNLDKRVSLKWNKDEKVVS 180

Query: 1470 SSQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKA 1291
            S QKRK  ++ E EKI  LVREYS STD  SLDWKKMKIPPVL SSEH+WLFKLMQPMK 
Sbjct: 181  SVQKRKDQKN-EMEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKG 239

Query: 1290 IIRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNK 1111
            +   +E LQ DLG EPT+GELAEATN+ V+ +++  EVGRAARNKLIKHNLRLVLFV+NK
Sbjct: 240  LHEAREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINK 299

Query: 1110 YFQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTK 931
            YFQDFANGPKFQDLCQAG +GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFT+
Sbjct: 300  YFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTR 359

Query: 930  VSFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARH 751
            VSFGLESVR EIQ+AKLE++F L+R+PTD+EIIE+VGISP RYHEVMR SKP+SSLH+RH
Sbjct: 360  VSFGLESVRAEIQKAKLEMIFSLKRIPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRH 419

Query: 750  TTTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 571
             TTQEE+INGITDVDGVEGD                   LKPKESLVIRQRYGLDGKGDR
Sbjct: 420  ATTQEEYINGITDVDGVEGDN-RRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 478

Query: 570  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 479  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 518


>ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Prunus mume]
          Length = 507

 Score =  655 bits (1689), Expect = 0.0
 Identities = 346/519 (66%), Positives = 404/519 (77%), Gaps = 2/519 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSSA+R+PLGL+ KL ++ S  R+P +++FKT +    ALVAP+E + LP+E  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTSQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIEXX 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSV-SDTEVK 1645
                             K+ +    +P T EVDYNEAAAKLEN+YK SP T   SD E  
Sbjct: 61   XXXXX------------KSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 108

Query: 1644 ELGMXXXXXXXXXXKEANEETEKG-TNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITS 1468
            +  M           E++ + E+  T+ T+VR+ TKK+KRLSLD+RV+ +  +D +VI S
Sbjct: 109  DGLMRRGRKRRKKTSESDADKEENRTSNTVVRNRTKKAKRLSLDKRVTLKWNKDEKVIAS 168

Query: 1467 SQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAI 1288
              +++ S  +E+EKI  LVREYS STD  SLDWKKMKIPPVL SSEH+WLFKLMQPMK +
Sbjct: 169  IVRKRKSRKNENEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 228

Query: 1287 IRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKY 1108
            + VKE+LQ DLGREPT+GELAEATN+ V+ +++ +EVGRAAR+KLIKHNLRLVLFV+NKY
Sbjct: 229  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 288

Query: 1107 FQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKV 928
            FQDFANGPKFQDLCQAG KGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSFT+V
Sbjct: 289  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 348

Query: 927  SFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHT 748
            SFGLESVR EIQ+AKL ++F L+RMPT+DEIIE+VGISP RYHEVMR SKP+ SLH+RHT
Sbjct: 349  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 408

Query: 747  TTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 568
            TTQEEFINGITDVDGVEGD                   LKPKESLVIRQRYGLDGKGDRT
Sbjct: 409  TTQEEFINGITDVDGVEGDN-RQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 467

Query: 567  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 468  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 506


>ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  652 bits (1682), Expect = 0.0
 Identities = 345/521 (66%), Positives = 411/521 (78%), Gaps = 4/521 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVS+SAAR+PLGL+ K  ++ S  R+P +++FKT ++   ALVAP+ ++ LP+E  
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNIPLPIETR 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTS-EVDYNEAAAKLENIYKLSPATSVSDTEVK 1645
               +K + +A K  + VK+ +    AP T+ EVDYNEAAAKLEN+YK SP    +D +V+
Sbjct: 61   KKLQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIE-ADVDVE 119

Query: 1644 E---LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVI 1474
            +   L            +  +E+ EK T+  +VRS TKK+KRL+LD+RV+ +  +D +V+
Sbjct: 120  DADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVV 179

Query: 1473 TSSQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMK 1294
            +S QKRK  ++ E EKI  LVREYS STD  SLDWKKMKIPPVL SSEH+WLFKLMQPMK
Sbjct: 180  SSVQKRKDQKN-ETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMK 238

Query: 1293 AIIRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLN 1114
             +  V+E LQ DLG EPT+GELAEATN+ V+ +++  EVGRAARNKLIKHNLRLVLFV+N
Sbjct: 239  GLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVIN 298

Query: 1113 KYFQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFT 934
            KYFQDFANGPKFQDLCQAG +GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFT
Sbjct: 299  KYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFT 358

Query: 933  KVSFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHAR 754
            +VSFGLESVR EIQ+AKLE++F L+RMPTD+EIIE+VGISP RYHEVMR SKP+SSLH+R
Sbjct: 359  RVSFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSR 418

Query: 753  HTTTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGD 574
            H TTQEE+INGITDVDGVEGD                   LKPKESLVIRQRYGLDGKGD
Sbjct: 419  HATTQEEYINGITDVDGVEGDN-RRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGD 477

Query: 573  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 478  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 518


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  648 bits (1672), Expect = 0.0
 Identities = 339/517 (65%), Positives = 397/517 (76%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVV+VSSSAAR+P+GL  K +T+    RRP +++FK  K+ N ALV  R+   LPVE +
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIMAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              + K   +A K  + V      E +P T +VDYNEAAAKLENIYKLSP+T   D +  E
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
                          E++ + + G +  +VRS TKK++RL LD+R+  +K R+ + + S Q
Sbjct: 121  GETKGRHLRRKRSTESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
             +K   + E EKI+RLVR+YS STD  SLDWKKMKIPPVLPS+EH+WLFKLMQPMKA++ 
Sbjct: 181  SKKGISN-ESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
             KE+LQ DLGR+PT+ ELAEATN     +R  +EVGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFQ 299

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFANGP+FQDLCQAG KGLITAIDRFEP+R+FRLSTYGLFWIRHAIIRSMTLSSFT+VSF
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 359

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEIQRAKLEL+FEL R PTDDE+I+RVGISP RY EVMR SKP++SLH RH+ T
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVT 419

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEEFI+GITDVDGV GD                   LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEEFISGITDVDGVGGD-HRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            EI+GNLNISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 479  EISGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  648 bits (1671), Expect = 0.0
 Identities = 341/517 (65%), Positives = 402/517 (77%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSS ARSPLGL+ K +T     +RPS++S K  KT N ALVAP+E + LP++  
Sbjct: 1    MGVVTVSSSPARSPLGLSTKFSTHRCTLKRPSIVSLKADKTNNIALVAPQEQIPLPIQTP 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
               +K L RA+K  +RVKAVS   T+P T E+D+NEAAAKLENIYKLSP T  SDTE  +
Sbjct: 61   KKQRKRLGRAIKTSKRVKAVSTDVTSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDID 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
             GM           +  +  EK T+  +VR+ TKK KRLSLD R+S  + ++ +   SS 
Sbjct: 121  -GMKSRHRKRMNGGD--DTGEKRTSDNVVRNRTKKVKRLSLDRRISLIRNKEGDA-DSSS 176

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
            + K  + +E+  ++ LVREYS STD  SLDWKKMKIPPVL S EH+WLFKLMQPMK +++
Sbjct: 177  RSKIDQKNENYSVDWLVREYSASTDLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQ 236

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
            +KE+L  D  REPTD ELAEA N++V+ +R+D++VGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 237  LKENLHKDFSREPTDYELAEALNMNVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQ 296

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFANGP+FQDLCQAG KGLITAIDRFEPKR+ RLSTYGLFWIRHAI RS+TLSSFT+VSF
Sbjct: 297  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRVRLSTYGLFWIRHAITRSLTLSSFTRVSF 356

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEIQRAKLEL+FEL R+PT+DEIIE+VGIS  RYHEVMR +KP+ SLHA+H  T
Sbjct: 357  GLESVRVEIQRAKLELLFELHRLPTEDEIIEKVGISFERYHEVMRAAKPVYSLHAKHMIT 416

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
             EEFIN +TDVDG+ GD+                  LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 417  HEEFINALTDVDGIHGDQ-RRQPALFRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 475

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 476  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 512


>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  647 bits (1669), Expect = 0.0
 Identities = 333/518 (64%), Positives = 408/518 (78%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVVTVSSS++++PLGL+++ +   +Q +RP +L+FKT K K+ ALV   E + LP++  
Sbjct: 1    MGVVTVSSSSSQTPLGLSSRFSVHQTQLKRPLILAFKTDKAKDRALVTHHEPIPLPMDTP 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              N+K L+RA K  +RVK V   E +  T E+DYN+ AAKLE+IYKLSP T VSD +  +
Sbjct: 61   KENQKRLRRATKPSKRVKVVCSDEASSCTIEMDYNDVAAKLESIYKLSPPTDVSDVDDTD 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
                          EA+ +T K ++  ++R+  K +KRLSLD R++ R+K++   +  S 
Sbjct: 121  RVGRRRRRTRKKLGEADRKTGKESSDNVIRNHNK-NKRLSLDRRIALRRKKEEGAVQLSG 179

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
             ++ S++D D  +++LV EYS STD  SLDWKKMKIPPVLPSSEH+WLFKLMQPM A+ +
Sbjct: 180  VKEGSKEDGD--VDKLVGEYSVSTDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMNALFQ 237

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
            +KE+L  DLGREPTDGELA++TN+ V  +R  IEVGRAARN+LIKHNLRLVLFV+NKYFQ
Sbjct: 238  MKENLHRDLGREPTDGELADSTNMSVFQVRRCIEVGRAARNRLIKHNLRLVLFVINKYFQ 297

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            +FANGPKFQDLCQAG KGLITAIDRFEPKR+FRLSTYGLFWIRHAI+RSMTLSSFT+VSF
Sbjct: 298  EFANGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTRVSF 357

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEIQRAKLELMFEL+R+PT++EII++VGISP RYHEV++ SKP+ SLH+RH  T
Sbjct: 358  GLESVRVEIQRAKLELMFELERLPTEEEIIKKVGISPERYHEVIKASKPVFSLHSRHAIT 417

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEEFINGITD++GV GDK                  LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 418  QEEFINGITDIEGVGGDK-RRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 476

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 448
            EIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRY++
Sbjct: 477  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIF 514


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  646 bits (1666), Expect = 0.0
 Identities = 340/520 (65%), Positives = 405/520 (77%), Gaps = 3/520 (0%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKL-ATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEG 1825
            MGVVTVSSS +R+PLGL+  L +++ S  R+P +++F+T K+   ALVAP+E + LP+E 
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 1824 SNMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTE-V 1648
                +K L +A K P+ VKA   +E      E+DYNEAAAKLEN+YK SP T  SD E V
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENV 120

Query: 1647 KELGMXXXXXXXXXXKEANEETEKGTNYTMV-RSPTKKSKRLSLDERVSSRKKRDSEVIT 1471
              L +           E +++ EK T+  +V RS TKK+KRLSLD+RV+ +  +D +V  
Sbjct: 121  DGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAA 180

Query: 1470 SSQKRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKA 1291
            S  +++  +  E+E +  LVREYS STD  SLDWKKM+IPPVL SSEH+WLFKLMQPMK 
Sbjct: 181  SVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKG 240

Query: 1290 IIRVKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNK 1111
            ++ VKE LQ DLGREP  GELAEATN+ V+ ++  +EVGRAARNKLIKHNLRLVLFV+NK
Sbjct: 241  LLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINK 300

Query: 1110 YFQDFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTK 931
            YFQDFANGPKFQDLCQAG KGLITAIDRFEP+R+FRLSTYGLFWIRHAIIRSMTLSSFT+
Sbjct: 301  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTR 360

Query: 930  VSFGLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARH 751
            VSFGLESVR EIQ+AKLE++ +L+RMPT+DEIIE+VGISP RYHEVMR SKP+ SL++RH
Sbjct: 361  VSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRH 420

Query: 750  TTTQEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 571
            + TQEEFINGITDVDGV+GD                   LKPKESLVIRQRYGLDGKGDR
Sbjct: 421  SVTQEEFINGITDVDGVDGDN-RRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 479

Query: 570  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 480  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 519


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  644 bits (1660), Expect = 0.0
 Identities = 338/517 (65%), Positives = 397/517 (76%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVV+VSSSAAR+P+GL  K +T+    RRP +++FK  K+ N ALV  R+   LPVE +
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              + K   +A K  + V      E +P T +VDYNEAAAKLENIYKLSP+T   D +  E
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
                         KE++ + + G +  +VRS TKK++RL LD+R+  +K R+ + + S Q
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
             +K   + E EKI+RLVR+YS STD  SLDWKKMK+PPVLPS+EH+WLFKLMQPMKA++ 
Sbjct: 181  SKKGISN-ESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
             KE+LQ DLGR+PT+ ELAEATN     +R  +EVGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQ 299

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFANGP+FQDLCQAG KGLITAIDRFEP+R+FRLSTYGLFWIRHAIIRSMTLSSFT+VSF
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 359

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEIQRAKLEL+FEL R PTDDE+I+RVGISP RY EVMR SKP++SLH RH+ T
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVT 419

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEEFI+GITDVDGV GD                   LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEEFISGITDVDGVGGD-HRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            EIAGNL+ISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 479  EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  644 bits (1660), Expect = 0.0
 Identities = 338/517 (65%), Positives = 397/517 (76%)
 Frame = -1

Query: 2001 MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLLSFKTGKTKNAALVAPRESLSLPVEGS 1822
            MGVV+VSSSAAR+P+GL  K +T+    RRP +++FK  K+ N ALV  R+   LPVE +
Sbjct: 32   MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 91

Query: 1821 NMNKKGLKRAVKHPERVKAVSFQETAPSTSEVDYNEAAAKLENIYKLSPATSVSDTEVKE 1642
              + K   +A K  + V      E +P T +VDYNEAAAKLENIYKLSP+T   D +  E
Sbjct: 92   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 151

Query: 1641 LGMXXXXXXXXXXKEANEETEKGTNYTMVRSPTKKSKRLSLDERVSSRKKRDSEVITSSQ 1462
                         KE++ + + G +  +VRS TKK++RL LD+R+  +K R+ + + S Q
Sbjct: 152  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 211

Query: 1461 KRKSSEDDEDEKINRLVREYSGSTDFTSLDWKKMKIPPVLPSSEHSWLFKLMQPMKAIIR 1282
             +K   + E EKI+RLVR+YS STD  SLDWKKMK+PPVLPS+EH+WLFKLMQPMKA++ 
Sbjct: 212  SKKGISN-ESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLE 270

Query: 1281 VKEHLQNDLGREPTDGELAEATNLDVLHLREDIEVGRAARNKLIKHNLRLVLFVLNKYFQ 1102
             KE+LQ DLGR+PT+ ELAEATN     +R  +EVGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 271  AKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQ 330

Query: 1101 DFANGPKFQDLCQAGAKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 922
            DFANGP+FQDLCQAG KGLITAIDRFEP+R+FRLSTYGLFWIRHAIIRSMTLSSFT+VSF
Sbjct: 331  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 390

Query: 921  GLESVRVEIQRAKLELMFELQRMPTDDEIIERVGISPGRYHEVMRVSKPISSLHARHTTT 742
            GLESVRVEIQRAKLEL+FEL R PTDDE+I+RVGISP RY EVMR SKP++SLH RH+ T
Sbjct: 391  GLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVT 450

Query: 741  QEEFINGITDVDGVEGDKXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 562
            QEEFI+GITDVDGV GD                   LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 451  QEEFISGITDVDGVGGD-HRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 509

Query: 561  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 451
            EIAGNL+ISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 510  EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYV 546