BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gardenia21_contig00001620
         (1866 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP17818.1| unnamed protein product [Coffea canephora]            730   0.0  
ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD,...   395   e-107
ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD,...   392   e-106
ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD,...   389   e-105
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   388   e-104
ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD,...   383   e-103
ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,...   375   e-101
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              375   e-101
ref|XP_012849780.1| PREDICTED: RNA polymerase sigma factor sigD,...   375   e-101
ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD,...   366   3e-98
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   337   3e-89
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   335   1e-88
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun...   330   3e-87
ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus nota...   326   5e-86
ref|XP_012065613.1| PREDICTED: RNA polymerase sigma factor sigD,...   325   1e-85
ref|XP_008231483.1| PREDICTED: RNA polymerase sigma factor sigD,...   323   3e-85
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu...   322   6e-85
ref|XP_011025491.1| PREDICTED: RNA polymerase sigma factor sigD,...   322   1e-84
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr...   321   1e-84
ref|XP_009354359.1| PREDICTED: RNA polymerase sigma factor sigD,...   321   2e-84

>emb|CDP17818.1| unnamed protein product [Coffea canephora]
          Length = 445

 Score =  730 bits (1885), Expect = 0.0
 Identities = 378/445 (84%), Positives = 395/445 (88%)
 Frame = -1

Query: 1791 MAISGCSSTNHSSTLPTISFFNYSPTKSCHQVFNTLHLPASFSSSKHALKSAPEVTFATS 1612
            MAISGCSSTNHSSTLPTISF  YSPTKSCHQVFN LHLP S SSSKHALKS PE TFATS
Sbjct: 1    MAISGCSSTNHSSTLPTISFSYYSPTKSCHQVFNNLHLPPSHSSSKHALKSTPEATFATS 60

Query: 1611 TATDEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKTWRNGVLMXXXXXXXXX 1432
            TAT EGVTLTID           AFEIENFLDF E KKDDEEKTWRNGVLM         
Sbjct: 61   TATHEGVTLTIDAAKAARAAVASAFEIENFLDFREWKKDDEEKTWRNGVLMRRKRRRKRR 120

Query: 1431 KAFPESLENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEI 1252
            KAF ESLENEKVI NVAI+ TN GQYLTPKQEAEYT CLKEEARV AVRKRIEET+ NE+
Sbjct: 121  KAFSESLENEKVIMNVAIKPTNSGQYLTPKQEAEYTLCLKEEARVEAVRKRIEETTENEV 180

Query: 1251 TLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQEGN 1072
            T AQWAK AGMS+NSLDKVLC+GREAQERIT CYRRLVISVASSYQGKGLSLQDLIQEGN
Sbjct: 181  TFAQWAKAAGMSKNSLDKVLCDGREAQERITRCYRRLVISVASSYQGKGLSLQDLIQEGN 240

Query: 1071 LGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEANSV 892
            LGLLHGAKKFNPEKGYKLSTYVYWWIRQAIT+AIAKKS+ITRLPGS+SELVPRICEAN+V
Sbjct: 241  LGLLHGAKKFNPEKGYKLSTYVYWWIRQAITKAIAKKSKITRLPGSVSELVPRICEANAV 300

Query: 891  LSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGPNET 712
            LSRRLRKLPTCQEIAEAV +D+ TV LALERNREPISLDQPIVAGASMSLQEIVAGP+ET
Sbjct: 301  LSRRLRKLPTCQEIAEAVKRDMSTVWLALERNREPISLDQPIVAGASMSLQEIVAGPDET 360

Query: 711  TPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQ 532
            TPEA+VKK F KRDI+KLLKGLCDREVNILRLYYGLNG+TPQSFEEIGR L+LSRERVRQ
Sbjct: 361  TPEAIVKKQFMKRDIEKLLKGLCDREVNILRLYYGLNGNTPQSFEEIGRQLELSRERVRQ 420

Query: 531  ISYAALTKLRETSMVNDLRAYILHS 457
            IS  ALTKLR+TSMVNDL  YILHS
Sbjct: 421  ISCTALTKLRQTSMVNDLITYILHS 445


>ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 423

 Score =  395 bits (1015), Expect = e-107
 Identities = 225/448 (50%), Positives = 293/448 (65%), Gaps = 6/448 (1%)
 Frame = -1

Query: 1791 MAISGCSSTNHSSTLPTISFFNYSPTKSCHQVF---NTLHLP--ASFSSSKHALKSAPEV 1627
            MA++  S +NHS      S F Y P+K   Q F   + L+ P   SF    HAL     +
Sbjct: 1    MAMAAWSCSNHSPA----SLFPY-PSKLSTQPFFAYSILYCPKNCSFLDPIHALT----I 51

Query: 1626 TFATSTATDEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKTWRNGVLMXXXX 1447
              A    T EG +L  D            F+ +  L    +K+    +            
Sbjct: 52   EAANEAFTIEGSSLVFDTDFEESSDKVEMFDEKIELALRRKKRRKRRRC----------- 100

Query: 1446 XXXXXKAFPESLENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEET 1267
                   + E LE EK      ++    G YLT K+EA+Y+  LKEEAR+  +RK +EET
Sbjct: 101  ------CYSECLEMEKEDNIFNLKPLKTGFYLTHKEEAKYSWYLKEEARIEILRKMVEET 154

Query: 1266 SGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDL 1087
            S  +++  Q AK AGMS   LDK+L N +E+Q++I  CYR LV+SVA+SYQGKGLSLQDL
Sbjct: 155  SEIDLSSKQLAKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDL 214

Query: 1086 IQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRIC 907
            IQEG++GLLHGAKKFNP+KGYKLSTY YWWIRQAI+RA+A KSR+ RLPGSISELVP+IC
Sbjct: 215  IQEGSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKIC 274

Query: 906  EANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVA 727
             AN+ LSR+LR++P+  EIAEA+  DV TV L +ERNR PIS+DQ +     MSLQ I++
Sbjct: 275  NANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTTQGYMSLQNIIS 334

Query: 726  GPNETTPEAMVKKHFRKRDIDKLLKG-LCDREVNILRLYYGLNGSTPQSFEEIGRHLKLS 550
            GP +TTPE  VK+   K+D++K+L+  LCDRE  IL+L++GLNG TPQSFEEIGR LKLS
Sbjct: 335  GPEDTTPEENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQSFEEIGRVLKLS 394

Query: 549  RERVRQISYAALTKLRETSMVNDLRAYI 466
            RER+RQI+  AL+KLRE+SM+++ + YI
Sbjct: 395  RERIRQINCTALSKLRESSMLDNFKMYI 422


>ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Sesamum
            indicum]
          Length = 446

 Score =  392 bits (1007), Expect = e-106
 Identities = 230/453 (50%), Positives = 300/453 (66%), Gaps = 16/453 (3%)
 Frame = -1

Query: 1776 CSSTNHSSTLPTISFFNYSPTKSCHQV--FNTLHLPASFSSSKHALKSAPEVTFATSTAT 1603
            CS +  S  LP ISF  YS TKS  +V  +NTL        +     +  E      +A 
Sbjct: 4    CSCSKQSPALPNISFPYYS-TKSFLKVSSYNTLPTYTQSPCNHTCSYTVQEDAIIIHSAC 62

Query: 1602 DEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEE-KTWRNGVLMXXXXXXXXXKA 1426
             + + +              A ++E  LD    + D +  + W N V +          +
Sbjct: 63   TQHLAVAA-------AAAAPAHDMEKLLDLKGSENDAKRGRFWCNEVAVRRKRRRKLRTS 115

Query: 1425 FPESLENEKVIKNVAI-RLTNPGQYLTPKQEAEY------THCLK-----EEARVAAVRK 1282
              E ++N++  K V + +     +++T K+EA +      T+ L+     E AR+ AV+ 
Sbjct: 116  --ERVKNDEDGKLVFVDKKEGKSRFMTSKEEARFSWIHEDTNSLEYDLQQERARIVAVKT 173

Query: 1281 RI-EETSGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKG 1105
             +  ET   E++ +QWAK AG+S+ +LD++LCNGRE++ERIT+CYRRLV+S+ASSYQGKG
Sbjct: 174  ELLAETGRREVSSSQWAKAAGISQRNLDRILCNGRESEERITSCYRRLVVSIASSYQGKG 233

Query: 1104 LSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISE 925
            LSLQDL QEG++GLL GA KFNPE+GYKLSTY YWWIRQ+ITRAIA KS+I RLPGSISE
Sbjct: 234  LSLQDLTQEGSIGLLRGAIKFNPERGYKLSTYAYWWIRQSITRAIANKSKIIRLPGSISE 293

Query: 924  LVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMS 745
            LVP+ICEAN+ LSRRLR+ PT  EIAEA++ +   V LA+ERNR PISLD+ I +   MS
Sbjct: 294  LVPKICEANAALSRRLRRPPTYDEIAEAIDANSSAVRLAIERNRSPISLDEAITSQGCMS 353

Query: 744  LQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGR 565
            LQ+IVAGP+E TPEAMVKK   K +I KLLK LCDRE +ILRL+YGLNG TP SFEEIGR
Sbjct: 354  LQDIVAGPDEITPEAMVKKDQLKPEIQKLLKPLCDREAHILRLHYGLNGETPWSFEEIGR 413

Query: 564  HLKLSRERVRQISYAALTKLRETSMVNDLRAYI 466
             L+LSRERVRQI+ AAL K+R+TS V DL+ +I
Sbjct: 414  VLELSRERVRQINSAALLKIRQTSKVEDLKHFI 446


>ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 416

 Score =  389 bits (1000), Expect = e-105
 Identities = 221/446 (49%), Positives = 290/446 (65%), Gaps = 4/446 (0%)
 Frame = -1

Query: 1791 MAISGCSSTNHSSTLPTISFFNYSPTKSCHQVFNTLHLP--ASFSSSKHALK-SAPEVTF 1621
            MA   CS+ + +S  P  S F+  P    H +   L+ P   SF    HAL   A  + F
Sbjct: 3    MAAWSCSNQSPASLFPYPSKFSTKPLIHYHPLA-ILYCPKNGSFLDPSHALAIEAKSLFF 61

Query: 1620 ATSTATDEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKTWRNGVLMXXXXXX 1441
             T    +    + I               I   ++ + R+K   ++              
Sbjct: 62   ETDIEEESSSKIEI---------------INEKIELALRRKKRRKRR------------- 93

Query: 1440 XXXKAFPESLENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEETSG 1261
                 + E L+ EK  K    +    G YLT K+E+EY+  LKEEAR+  +RKR+EETS 
Sbjct: 94   ----CYSEFLDMEKEDKISISKPVKTGLYLTLKEESEYSWYLKEEARIETLRKRVEETSE 149

Query: 1260 NEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQ 1081
             E+   Q AK AGMSR  LDK+L N + +Q++I  CYR LV+SVA+SYQGKGLSLQDLIQ
Sbjct: 150  IELNPNQLAKAAGMSRRRLDKLLVNAKISQKKIIKCYRGLVVSVAASYQGKGLSLQDLIQ 209

Query: 1080 EGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEA 901
            EG++GLLHGAKKFNP+KGYKLSTY YWWIRQAITRAIA KSR+ RLPGSISELVP+IC A
Sbjct: 210  EGSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNA 269

Query: 900  NSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGP 721
            N+ LSR+LR++P+  EIAEA++ DV TV L +ERNR PIS+DQ + +   MSLQ+I++GP
Sbjct: 270  NTELSRKLRRMPSYDEIAEALDMDVSTVRLVIERNRAPISIDQIVTSKGYMSLQDIISGP 329

Query: 720  NETTPEAMVKKHFRKRDIDKLLKG-LCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRE 544
             +  PE +VK+   K+D++KLL   LCDRE  IL+L++GLNG TPQSFEEIG+ LKLSRE
Sbjct: 330  EDIIPEEIVKRQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIGKVLKLSRE 389

Query: 543  RVRQISYAALTKLRETSMVNDLRAYI 466
            R+RQI+  AL+KLRE++M++  + YI
Sbjct: 390  RIRQINCTALSKLRESTMLDSFKMYI 415


>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Solanum tuberosum]
          Length = 421

 Score =  388 bits (996), Expect = e-104
 Identities = 221/451 (49%), Positives = 294/451 (65%), Gaps = 9/451 (1%)
 Frame = -1

Query: 1791 MAISGCSSTNHSSTLP------TISFFNYSPTKSCHQVFNTLHLP--ASFSSSKHALKSA 1636
            MA   CS+ + +S  P      T  FF+YS           L+ P   SF    HAL   
Sbjct: 1    MAAWSCSNHSPASLFPYPSKLSTKPFFHYS----------ILYCPKNCSFLDPIHALT-- 48

Query: 1635 PEVTFATSTATDEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKTWRNGVLMX 1456
              +  A    T EG +L  D            F+ +  ++ + R+K+  ++         
Sbjct: 49   --IEAANEAFTIEGSSLVFDTDFEESINKVEMFDEK--IELALRRKNRRKRR-------- 96

Query: 1455 XXXXXXXXKAFPESLENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRI 1276
                      + E LE EK  + +  +    G YLT ++EA+Y+  LKEEAR+  +RK +
Sbjct: 97   -------RCCYSECLEMEKGDRILNSKPLKTGFYLTHEEEAKYSWYLKEEARIEILRKMV 149

Query: 1275 EETSGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSL 1096
            EETS  +++  Q AK AGMS   LDK+L N +E+Q++I  CYR LV+SVA+SYQGKGLSL
Sbjct: 150  EETSEIDLSSKQLAKAAGMSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSL 209

Query: 1095 QDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVP 916
            QDLIQEG++GLLHGAKKFNP+KGYKLSTY YWWIRQAI+RA+A KSR+ RLPGSISELVP
Sbjct: 210  QDLIQEGSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVP 269

Query: 915  RICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQE 736
            +IC AN+ LSR+LR++P+  EIAEA+  DV TV L +ERNR PIS+DQ + +   MSLQ 
Sbjct: 270  KICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTSQGYMSLQN 329

Query: 735  IVAGPNETTPEAMVKKHFRKRDIDKLLKG-LCDREVNILRLYYGLNGSTPQSFEEIGRHL 559
            I++GP +TTPE  VK+   K+D++K+L   LCDRE  IL+L++GLNG  PQSFEEIGR L
Sbjct: 330  IISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQSFEEIGRVL 389

Query: 558  KLSRERVRQISYAALTKLRETSMVNDLRAYI 466
            KLSRER+RQI+  AL+KLRE+SM+++ + YI
Sbjct: 390  KLSRERIRQINCTALSKLRESSMLDNFKMYI 420


>ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nicotiana
            sylvestris]
          Length = 426

 Score =  383 bits (984), Expect = e-103
 Identities = 195/321 (60%), Positives = 249/321 (77%), Gaps = 1/321 (0%)
 Frame = -1

Query: 1425 FPESLENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITL 1246
            + E L+ +K  K    +    G YLT K+E+EY+  LKEEAR+  +RKR+EETS  E+  
Sbjct: 105  YSECLDMDKGDKISISKPVKTGLYLTLKEESEYSWYLKEEARMETLRKRVEETSEIEVNP 164

Query: 1245 AQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLG 1066
             Q AK AGMSR  LDKVL N + +Q++I  CY  LV+SVA+SYQGKGLSLQDLIQEG++G
Sbjct: 165  NQLAKAAGMSRRRLDKVLINAKISQKKIIKCYTGLVVSVAASYQGKGLSLQDLIQEGSIG 224

Query: 1065 LLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEANSVLS 886
            LLHGAKKFNP KGYKLSTY YWWIRQAITRAIA KSR+ RLPGSISELVP+IC AN+ LS
Sbjct: 225  LLHGAKKFNPNKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNANTELS 284

Query: 885  RRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGPNETTP 706
            R+L+++P+  EIAEA++ DV TV L +ERNR PIS+DQ + +   MSLQ+I++GP +  P
Sbjct: 285  RKLQRMPSYDEIAEALDMDVSTVRLVIERNRAPISIDQIVTSQGYMSLQDIISGPEDILP 344

Query: 705  EAMVKKHFRKRDIDKLLKG-LCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQI 529
            E ++K+   K+D++KLL   LCDRE  IL+L++GLNG TPQSFEEIG+ LKLSRER+RQI
Sbjct: 345  EEILKRQMMKQDLEKLLHNVLCDREAKILKLHFGLNGDTPQSFEEIGKVLKLSRERIRQI 404

Query: 528  SYAALTKLRETSMVNDLRAYI 466
            +  AL+KLRE+SM++  + YI
Sbjct: 405  NCTALSKLRESSMLDSFKMYI 425


>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Vitis
            vinifera]
          Length = 442

 Score =  375 bits (964), Expect = e-101
 Identities = 185/297 (62%), Positives = 240/297 (80%)
 Frame = -1

Query: 1353 LTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGREA 1174
            LTP++EAE+  CLKEEA + A R+RI ET  +E T  QWA+  G+ R+SLDK+LCNGRE+
Sbjct: 146  LTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRES 205

Query: 1173 QERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWI 994
            +ERI   YRRLV+S+A+ YQGKGLSLQDLIQEG++GLL GA++F+P++GYKLSTYVYWWI
Sbjct: 206  RERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWI 265

Query: 993  RQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVG 814
            RQAI RAIA KSRI RLPGSI E+V +I EA +VLSRRLR+LPT  EIAE ++ +V TV 
Sbjct: 266  RQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVR 325

Query: 813  LALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDRE 634
            L  ER+R PIS+DQ + +   M+LQEI+ GP+ETTP+ MVK+   K+++++ L  LC+RE
Sbjct: 326  LVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCERE 385

Query: 633  VNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLRAYIL 463
              ILRLY+G+NG TP SFEEIGR +KLSRERVRQI+  AL+KLR+TS+V+ L+ Y++
Sbjct: 386  AYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 442


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  375 bits (964), Expect = e-101
 Identities = 185/297 (62%), Positives = 240/297 (80%)
 Frame = -1

Query: 1353 LTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGREA 1174
            LTP++EAE+  CLKEEA + A R+RI ET  +E T  QWA+  G+ R+SLDK+LCNGRE+
Sbjct: 23   LTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRES 82

Query: 1173 QERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWI 994
            +ERI   YRRLV+S+A+ YQGKGLSLQDLIQEG++GLL GA++F+P++GYKLSTYVYWWI
Sbjct: 83   RERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWI 142

Query: 993  RQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVG 814
            RQAI RAIA KSRI RLPGSI E+V +I EA +VLSRRLR+LPT  EIAE ++ +V TV 
Sbjct: 143  RQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVR 202

Query: 813  LALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDRE 634
            L  ER+R PIS+DQ + +   M+LQEI+ GP+ETTP+ MVK+   K+++++ L  LC+RE
Sbjct: 203  LVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCERE 262

Query: 633  VNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLRAYIL 463
              ILRLY+G+NG TP SFEEIGR +KLSRERVRQI+  AL+KLR+TS+V+ L+ Y++
Sbjct: 263  AYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 319


>ref|XP_012849780.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X2
            [Erythranthe guttatus]
          Length = 436

 Score =  375 bits (963), Expect = e-101
 Identities = 218/460 (47%), Positives = 295/460 (64%), Gaps = 13/460 (2%)
 Frame = -1

Query: 1806 SLQNFMAISGCSSTNHSSTLPTISFFNYSPTKSCHQVFNTLHLPASFSSSKHALKSAPEV 1627
            S  N    S  S+T +SS L  IS +N S         N L   +  SSS +A  +  E 
Sbjct: 10   SSSNLFFSSIHSTTTNSSYLKLISIYNLSN--------NPLLYSSPHSSSNYACVTVRE- 60

Query: 1626 TFATSTATDEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKT--WRNGVLMXX 1453
                    +E   + I              E  +FLD  E ++ + E+   WRNGV +  
Sbjct: 61   --------EEDPLIGI--------------ETASFLDVKEERESEVEREHFWRNGVAIRR 98

Query: 1452 XXXXXXXKAFPESL--------ENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARV 1297
                       E +        +N K +   + + +   +++ PK+EA+++  L+E AR+
Sbjct: 99   KRRRRRRINLLECMNIDDDDDYQNHKFL--FSDKNSGKSRFMNPKEEAKFSWHLQERARI 156

Query: 1296 AAVRKRI---EETSGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVA 1126
             AVR       E   +E++  QWA  AG+S+ +LD+++ NG+++++RIT  Y RLV+SVA
Sbjct: 157  EAVRTEALAKMEEEEHELSSIQWANAAGISQKNLDRIIWNGKQSEKRITKSYLRLVVSVA 216

Query: 1125 SSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITR 946
            SSYQGKGLSLQDL QEG++GLL GA KFNPEKGYKLSTY YWWIRQAITRAI KKS+I R
Sbjct: 217  SSYQGKGLSLQDLTQEGSIGLLRGAIKFNPEKGYKLSTYAYWWIRQAITRAITKKSKIIR 276

Query: 945  LPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPI 766
            LPGSI ELVP+ICEAN+VLSR+LR+ PT +EIAE ++ +  +V LA+ERN+ PISLDQ  
Sbjct: 277  LPGSIHELVPKICEANAVLSRKLRRFPTYEEIAEEIDANASSVRLAIERNKSPISLDQAS 336

Query: 765  VAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQ 586
             +  SMSLQ I+ GP+E TPEAMVKK   K +I+KLL+ LCDRE ++LRL+YGLNG  P+
Sbjct: 337  TSRGSMSLQAIIPGPDEMTPEAMVKKEALKPEIEKLLEPLCDREAHVLRLHYGLNGGAPR 396

Query: 585  SFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLRAYI 466
            SFEEIG+ L+LSRERVRQI+ +AL+KLRE   ++DL+ +I
Sbjct: 397  SFEEIGKLLELSRERVRQINSSALSKLREIVEIDDLKYFI 436


>ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nelumbo
            nucifera]
          Length = 455

 Score =  366 bits (940), Expect = 3e-98
 Identities = 213/457 (46%), Positives = 286/457 (62%), Gaps = 14/457 (3%)
 Frame = -1

Query: 1791 MAISGCSSTNHSSTLPTISFFNYSPTKSCHQVFNTLHLPASFSSSKHALKS-----APEV 1627
            MA    SS+NHS +LPT+S ++     S  +    L  P SFSS+  + K      A + 
Sbjct: 1    MATICSSSSNHSPSLPTVSLYSIPTKSSSVRTLQXLXYPPSFSSATPSSKPGGLGLASDD 60

Query: 1626 TFATSTATDEGVTLTI-------DXXXXXXXXXXXAFEIENFLDFS-ERKKDDEEKTWRN 1471
            + A + A  E V L         D            F   N L  + +R  D  + T   
Sbjct: 61   SLAVAAAA-EAVALASAAAQAARDAASSALALTECQFGGNNMLAGNFDRVSDWADWTRVG 119

Query: 1470 GVLMXXXXXXXXXKAFPESLE-NEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVA 1294
            G                  ++ +   +++ + R +    YLTPK+EAE++  LKEEAR+ 
Sbjct: 120  GAARSRRKKRSKALELSAGVDLSNNCMESCSFRPSR-SMYLTPKEEAEFSLYLKEEARLE 178

Query: 1293 AVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQ 1114
            A R R+ ET+ +E T +QWA+ AGM   +LDK+LC  RE++ERI   YRRL+ S+AS YQ
Sbjct: 179  AARTRLRETNEHEPTSSQWAEAAGMRGATLDKMLCQARESRERIVFSYRRLIFSIASGYQ 238

Query: 1113 GKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGS 934
            GKGLSLQDLIQEG++GLL G ++F+P KGYKLSTYVYWWI+QAI RAIA KSR+ RLPGS
Sbjct: 239  GKGLSLQDLIQEGSIGLLRGXERFDPRKGYKLSTYVYWWIKQAIIRAIASKSRMVRLPGS 298

Query: 933  ISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGA 754
            +SE++ +I EAN+VLS RL ++PT  EIA+ +   V TV L  ER+R P+S+D+      
Sbjct: 299  VSEMMAKIAEANTVLSTRLGRVPTYDEIADMLGICVSTVSLLCERSRPPMSVDRTYSDHG 358

Query: 753  SMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEE 574
             M LQEI++GP ETTPE MV +   K+++++LLK L +RE NILRLY+GLNG TP SFEE
Sbjct: 359  CMKLQEIISGPEETTPETMVNRQLMKQEVERLLKILGEREANILRLYFGLNGETPCSFEE 418

Query: 573  IGRHLKLSRERVRQISYAALTKLRETSMVNDLRAYIL 463
            IGR L LSRERVRQI Y AL KL++++ ++DLR Y L
Sbjct: 419  IGRLLNLSRERVRQIYYIALAKLQQSNTIDDLRLYFL 455


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
            gi|557541154|gb|ESR52198.1| hypothetical protein
            CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  337 bits (863), Expect = 3e-89
 Identities = 174/316 (55%), Positives = 232/316 (73%)
 Frame = -1

Query: 1410 ENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAK 1231
            EN ++  N+ ++      YLTP +EAE  + LKE A++   RK + +   +E    Q AK
Sbjct: 122  ENGELDYNL-VKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAK 180

Query: 1230 TAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGA 1051
              GM ++ +DK+LC  RE+QERI   YR LV+S+A+ YQGKGLSL+DLIQEG++GLL GA
Sbjct: 181  ATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 240

Query: 1050 KKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRK 871
            K+FNPE+GYKLSTYVYWWI+QAI R IA KSR  RLPGS+S +V +I EAN+VLSRRLR+
Sbjct: 241  KRFNPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRR 300

Query: 870  LPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVK 691
            +PT  EIAE +N  V TV LA+ER R PISLD  I     M+LQ+I+ GP+ET PE MV+
Sbjct: 301  MPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITDTGCMTLQDIIPGPDETMPEKMVQ 360

Query: 690  KHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALT 511
            K   K+++ +LL+ L +RE +ILRL++GL+G TP S +EIGR L LSRERVRQI   ALT
Sbjct: 361  KQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQIRGIALT 420

Query: 510  KLRETSMVNDLRAYIL 463
            KL++T++ N+L+ Y++
Sbjct: 421  KLQQTNIRNNLKVYMV 436


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Citrus sinensis]
          Length = 436

 Score =  335 bits (858), Expect = 1e-88
 Identities = 173/316 (54%), Positives = 231/316 (73%)
 Frame = -1

Query: 1410 ENEKVIKNVAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAK 1231
            EN ++  N+ ++      YLTP +EAE  + LKE A++   RK + +   +E    Q AK
Sbjct: 122  ENGELDYNL-VKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAK 180

Query: 1230 TAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGA 1051
              GM ++ +DK+LC  RE+QERI   YR LV+S+A+ YQGKGLSL+DLIQEG++GLL GA
Sbjct: 181  ATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 240

Query: 1050 KKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRK 871
            K+FNPE+GYKLSTYVYWWI+QAI R IA KSR  RLPGS+S +V +I EAN+VLSRRLR+
Sbjct: 241  KRFNPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRR 300

Query: 870  LPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVK 691
            +PT  EIAE +N  V  V LA+ER R PISLD  I     M+LQ+I+ GP+ET PE MV+
Sbjct: 301  MPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITDTGCMTLQDIIPGPDETMPEKMVQ 360

Query: 690  KHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALT 511
            K   K+++ +LL+ L +RE +ILRL++GL+G TP S +EIGR L LSRERVRQI   ALT
Sbjct: 361  KQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQIRGIALT 420

Query: 510  KLRETSMVNDLRAYIL 463
            KL++T++ N+L+ Y++
Sbjct: 421  KLQQTNIRNNLKVYMV 436


>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
            gi|462415663|gb|EMJ20400.1| hypothetical protein
            PRUPE_ppa017025mg [Prunus persica]
          Length = 440

 Score =  330 bits (845), Expect = 3e-87
 Identities = 201/450 (44%), Positives = 277/450 (61%), Gaps = 12/450 (2%)
 Frame = -1

Query: 1776 CSSTNHSSTLPTISF--FNYSPTKSCHQVFNTLHLPASFSSSKHALKSAPEVTFATSTAT 1603
            CSS N    LPT+S     ++P K+ H +   LHLP   SSSK           A + A 
Sbjct: 8    CSSPNQPPILPTLSLPTIPFTPLKTHHPL--QLHLPFPSSSSKSGGNLVSNDALAIAAAA 65

Query: 1602 DEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEE--KTWRNGV----LMXXXXXX 1441
            +  V                   +E  +D     +D  E    W +G     L+      
Sbjct: 66   EALVLARA--------------AVEAAIDAVAVTEDIGEVWSCWESGNESGGLVARRKRR 111

Query: 1440 XXXKAFPESLENEKVIKNVAIRLTNPG----QYLTPKQEAEYTHCLKEEARVAAVRKRIE 1273
               +   E+L+ E++ ++V   + + G    ++L+P++EAE    LKE AR+ + R R+ 
Sbjct: 112  RKRRKGLEALD-EEMKRDVEDGMVSFGFVRYEHLSPREEAECCLSLKEGARLESERFRVV 170

Query: 1272 ETSGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQ 1093
            E   +E T  Q AK  GM   S+DKVLC  RE+QE+I   YR LV+SVASSYQGKGLS Q
Sbjct: 171  EAQKHEPTSKQLAKAMGMKMRSIDKVLCKRRESQEKIIRSYRGLVVSVASSYQGKGLSFQ 230

Query: 1092 DLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPR 913
            DLIQEG++GLL GA+KF+ E+ +KLSTYVYWWIRQAI RAI  KSRI RLPG +  ++ +
Sbjct: 231  DLIQEGSIGLLRGAEKFDHEREWKLSTYVYWWIRQAIIRAIENKSRIIRLPGHVCGMMAK 290

Query: 912  ICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEI 733
            I +A + L++R ++LP+  EIAE +  +  TV L  ER+R PISLD+      SM+LQEI
Sbjct: 291  ITKAQNSLNQRFQRLPSHDEIAEVIKVNASTVKLVCERSRPPISLDRVATVRGSMTLQEI 350

Query: 732  VAGPNETTPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGRHLKL 553
            + GP E  PE M+ +   K++++KLLK L DRE N+LRL++GLNG +PQSFEEIGR LKL
Sbjct: 351  IQGPEEMMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSFEEIGRLLKL 410

Query: 552  SRERVRQISYAALTKLRETSMVNDLRAYIL 463
            SRERVRQI+  AL+KLR+TS++++L+ YI+
Sbjct: 411  SRERVRQINGIALSKLRQTSILDNLKLYIV 440


>ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587907279|gb|EXB95293.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 422

 Score =  326 bits (835), Expect = 5e-86
 Identities = 169/295 (57%), Positives = 221/295 (74%), Gaps = 1/295 (0%)
 Frame = -1

Query: 1356 YLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGRE 1177
            YL+P++EAE    LKE A++ A R R+  +  +E T  + AK  GM   S+DK+LC+ RE
Sbjct: 122  YLSPREEAECCLILKEGAKLEATRLRMTNSEDHEPTSKELAKAMGMEMRSIDKMLCDKRE 181

Query: 1176 AQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWW 997
            +QERI+  YRRLV+SVA+ YQGKGLS  DLIQEG++GLL GA+KF+P++G KLSTYVYWW
Sbjct: 182  SQERISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKFDPQRGNKLSTYVYWW 241

Query: 996  IRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTV 817
            IRQAI RAI  KSR+ RLPG++  +V ++ EAN+VL++RLR+ PT  EIA+ V   V TV
Sbjct: 242  IRQAIIRAIENKSRVVRLPGNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTV 301

Query: 816  GLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKG-LCD 640
             L  ER R PISLD+ I     M+LQEI+ GP E +PE MV+K   K++I+KLLK  L D
Sbjct: 302  RLVSERIRPPISLDRAITERGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSD 361

Query: 639  REVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLR 475
            RE N+LRL++GL+G  P S EEIGR LKLSRER+RQI+  AL+KL++T++VNDLR
Sbjct: 362  REANVLRLHFGLSGDIPLSCEEIGRLLKLSRERIRQINGIALSKLQQTNIVNDLR 416


>ref|XP_012065613.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Jatropha curcas] gi|643737466|gb|KDP43578.1|
            hypothetical protein JCGZ_16865 [Jatropha curcas]
          Length = 429

 Score =  325 bits (832), Expect = 1e-85
 Identities = 169/319 (52%), Positives = 229/319 (71%), Gaps = 1/319 (0%)
 Frame = -1

Query: 1416 SLENEKVIKN-VAIRLTNPGQYLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQ 1240
            ++E EK  +N  A+  ++   YL+P +E E+  CLK++AR+ A R+RI ET  +E TL Q
Sbjct: 111  AVEEEKNGQNETALFQSSSNGYLSPIEETEFCLCLKDQARLEAARRRIAETQEHEPTLKQ 170

Query: 1239 WAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLL 1060
             AK   M R S+ K+ C GRE++ RIT  Y+RLV+S+A SY+GKGLSLQDLIQEG++GLL
Sbjct: 171  LAKALKMRRRSVGKIPCKGRESRRRITYYYKRLVVSIAKSYRGKGLSLQDLIQEGSIGLL 230

Query: 1059 HGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRR 880
             GA++F+P +G KLSTYVYWWIR+AI  +I+ KSRI RLPG + E   +I EA   L +R
Sbjct: 231  RGAERFDPSRGNKLSTYVYWWIREAIITSISNKSRIVRLPGGMREKKKKIAEARIALEKR 290

Query: 879  LRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEA 700
            L +LP+  EIA+A+N  + TV +  E NR P+SLD+ +     M+LQEI+ GP+E  PE 
Sbjct: 291  LGRLPSYDEIAQALNLHISTVRIGFESNRFPVSLDRAMSDQGGMTLQEILPGPDEMMPEY 350

Query: 699  MVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYA 520
            MVK+   K+++DKLL+ L +RE  +LRL +GLNG TPQSFEEIG  LKL RERVRQI+  
Sbjct: 351  MVKRQLLKQELDKLLQTLSEREAYVLRLTFGLNGQTPQSFEEIGGSLKLCRERVRQINSI 410

Query: 519  ALTKLRETSMVNDLRAYIL 463
            AL+KLRE S++ +L  YI+
Sbjct: 411  ALSKLRERSILENLEVYIV 429


>ref|XP_008231483.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Prunus
            mume]
          Length = 442

 Score =  323 bits (829), Expect = 3e-85
 Identities = 197/442 (44%), Positives = 268/442 (60%), Gaps = 6/442 (1%)
 Frame = -1

Query: 1776 CSSTNHSSTLPTISF--FNYSPTKSCHQVFNTLHLPASFSSSKHALKSAPEVTFATSTAT 1603
            CSS N    LPT+S     ++P K+ H +   LHLP   SSSK           A + A 
Sbjct: 8    CSSPNQPPILPTLSLPTIPFTPLKTHHPL--QLHLPFPSSSSKFGGNLVSNDALAIAAAA 65

Query: 1602 DEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKTWRNGVLMXXXXXXXXXKAF 1423
             E + L                EI       E   +      R  +              
Sbjct: 66   -EALVLARAAVEAAIDAVAVTEEIGEVWSCRENGNESSGLVARRKMRRKRRKRL------ 118

Query: 1422 PESLENEKVIKNVAIRLTNPG----QYLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNE 1255
             E+L+ E++ ++V   + + G    ++L+P++EAE    LKE AR+ + R R+ E   +E
Sbjct: 119  -EALD-EEMNRDVEDGMVSFGFVRYEHLSPREEAECCLSLKEGARLESERFRVVEAQKHE 176

Query: 1254 ITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQGKGLSLQDLIQEG 1075
             T  Q AK  GM   S+DKVLC  RE+QE+I   YR LV+SVASSYQGKGLS QDLIQEG
Sbjct: 177  PTSKQLAKAMGMKMRSIDKVLCKRRESQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQEG 236

Query: 1074 NLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSISELVPRICEANS 895
            ++GLL GA+KF+ E+ +KLSTYVYWWIRQAI RAI  KSRI RLPG +  ++ +I +A +
Sbjct: 237  SIGLLRGAEKFDHERKWKLSTYVYWWIRQAIIRAIENKSRIIRLPGHVCGMMAKITKAQN 296

Query: 894  VLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGASMSLQEIVAGPNE 715
             L++RL++LP+  E+AE +  +  TV L  ER+R PISLD+      SM+LQEI+ GP E
Sbjct: 297  SLNQRLQRLPSHDELAEVIKVNASTVKLVCERSRPPISLDRVATVRGSMTLQEIIQGPEE 356

Query: 714  TTPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVR 535
              PE M+ +   K++++KLLK L DRE N+LRL++GLNG +PQSFEEIGR LKLSRERVR
Sbjct: 357  MMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSFEEIGRLLKLSRERVR 416

Query: 534  QISYAALTKLRETSMVNDLRAY 469
            QI+  AL+KLR+TS ++ L ++
Sbjct: 417  QINGIALSKLRQTSTLDILYSF 438


>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
            gi|550331146|gb|ERP56881.1| hypothetical protein
            POPTR_0009s06210g [Populus trichocarpa]
          Length = 423

 Score =  322 bits (826), Expect = 6e-85
 Identities = 166/297 (55%), Positives = 220/297 (74%), Gaps = 1/297 (0%)
 Frame = -1

Query: 1356 YLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGRE 1177
            YL+PK+EAE++ CLK EAR+ A R+RI E    + T  Q AK   M +NS+D VLC GRE
Sbjct: 125  YLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCKGRE 184

Query: 1176 AQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWW 997
            ++E+I   YRRLV+S+A+SYQ KGLSLQDLIQEG++GLL GA++F+P++GYKLSTYVYWW
Sbjct: 185  SREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTYVYWW 244

Query: 996  IRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTV 817
            I++AI  AI+  +R+ RLP     LV +I  AN+ LS +LR+ P+  EIA+ +N  V TV
Sbjct: 245  IKEAILTAISNNTRMVRLPRRWWMLVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTV 304

Query: 816  GLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKG-LCD 640
             L  ER R PISLDQ ++   S++LQEI+ GP+ET PE MVK+   K++++KL +  L +
Sbjct: 305  RLGFERGRSPISLDQAVLGQNSLTLQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTE 364

Query: 639  REVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLRAY 469
            RE +ILRL++GLNG TPQS EEIGR +KLSRERVRQI   AL+KLR   +V  L+AY
Sbjct: 365  REAHILRLHFGLNGQTPQSCEEIGRLVKLSRERVRQIIGTALSKLRHKEIVEPLKAY 421


>ref|XP_011025491.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Populus euphratica]
          Length = 423

 Score =  322 bits (824), Expect = 1e-84
 Identities = 165/297 (55%), Positives = 220/297 (74%), Gaps = 1/297 (0%)
 Frame = -1

Query: 1356 YLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGRE 1177
            YL+PK+EAE++ CLK EAR+ A R+RI +    + T  Q AK   M +N++D VLC GRE
Sbjct: 125  YLSPKEEAEFSMCLKHEARIEAARRRIGDVQELDPTSKQLAKALRMEKNTVDNVLCKGRE 184

Query: 1176 AQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWW 997
            ++E+I   YRRLV+S+A+SYQ KGLSLQDLIQEG++GLL GA++F+P++GYKLSTYVYWW
Sbjct: 185  SREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGYKLSTYVYWW 244

Query: 996  IRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTV 817
            I++AI  AI+  +R+ RLP     LV +I  AN+ LS +LR+ P+  EIAE +N  V TV
Sbjct: 245  IKEAILTAISNNTRMVRLPRRWWMLVAKIAGANNDLSNKLRRSPSYDEIAEVLNMKVSTV 304

Query: 816  GLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKG-LCD 640
             L  ER R PISLDQ ++   S++LQEI+ GP+ET PE MVK+   K++++KL +  L +
Sbjct: 305  RLGFERGRSPISLDQAVLGQNSLTLQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTE 364

Query: 639  REVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLRAY 469
            RE +ILRL++GLNG TPQS EEIGR +KLSRERVRQI   AL+KLR   +V  L+AY
Sbjct: 365  REAHILRLHFGLNGQTPQSCEEIGRLVKLSRERVRQIICTALSKLRHKRIVEPLKAY 421


>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
            gi|557100961|gb|ESQ41324.1| hypothetical protein
            EUTSA_v10013654mg [Eutrema salsugineum]
          Length = 421

 Score =  321 bits (823), Expect = 1e-84
 Identities = 164/296 (55%), Positives = 217/296 (73%)
 Frame = -1

Query: 1356 YLTPKQEAEYTHCLKEEARVAAVRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGRE 1177
            +L+  +E +    LKE A++  V   +EE   NEI     +   G  + S +++LC  RE
Sbjct: 124  FLSRLEEVQLCLYLKEGAKLENVGTSVEE---NEIVSVLLSSGKGKKKRSANEILCRRRE 180

Query: 1176 AQERITACYRRLVISVASSYQGKGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWW 997
            A+E+IT CYRRLV+S+A+ YQGKGL+LQDLIQEG++GLL GA++F+PE+GYKLSTYVYWW
Sbjct: 181  AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYWW 240

Query: 996  IRQAITRAIAKKSRITRLPGSISELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTV 817
            I+QAI RAIA KSR+ +LPGS+ EL  ++ EA++VL+R+L+++P+C+EIAE +N  V  V
Sbjct: 241  IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLKRIPSCEEIAEHLNIHVSAV 300

Query: 816  GLALERNREPISLDQPIVAGASMSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDR 637
             LA+ER R P+SLD+       M+LQEIV GP+ET PE MVK+   K +I++LL  L  R
Sbjct: 301  RLAVERGRSPVSLDRVASLNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTAR 360

Query: 636  EVNILRLYYGLNGSTPQSFEEIGRHLKLSRERVRQISYAALTKLRETSMVNDLRAY 469
            E  +L LY+GLNG TP SFEEIG+ LKLSRERVRQI+  ALTKLR    VNDLR Y
Sbjct: 361  ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALTKLRNVHNVNDLRLY 416


>ref|XP_009354359.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Pyrus x
            bretschneideri]
          Length = 436

 Score =  321 bits (822), Expect = 2e-84
 Identities = 204/456 (44%), Positives = 275/456 (60%), Gaps = 13/456 (2%)
 Frame = -1

Query: 1791 MAISG--CSSTNHSSTLPTISFFNYSPTKSCHQVFNTLHLPASFSSSKHALKSAPEVTFA 1618
            MAI+   CSS N S TLPT+      P K+ H +   LH P   SSS  + K      F 
Sbjct: 1    MAITSSICSSPNQSPTLPTL------PLKTHHPLH--LHFPPLSSSSSSSSK------FG 46

Query: 1617 TSTATDEGVTLTIDXXXXXXXXXXXAFEIENFLDFSERKKDDEEKTWR-------NGVLM 1459
             S  +++ + +                 +E   D +   +D+  K W        +G L+
Sbjct: 47   ASLVSNDALVVAAAAEALALARAA----VEAARD-AAAARDEIVKAWSCRESGNGSGGLV 101

Query: 1458 XXXXXXXXXKAFPESL--ENEKVIKN--VAIRLTNPGQYLTPKQEAEYTHCLKEEARVAA 1291
                     +   E L  E E+ + +  ++  L   G +L+ K+EAE    LKE AR+ +
Sbjct: 102  MRRKGRRQRRRGLEGLGEERERGVGDGKLSFGLVRCG-HLSSKEEAECCLSLKEGARLES 160

Query: 1290 VRKRIEETSGNEITLAQWAKTAGMSRNSLDKVLCNGREAQERITACYRRLVISVASSYQG 1111
             R R+ E    E T  Q AK  GM   S+DKVLC  RE+QERI   YR L++SVASSYQG
Sbjct: 161  RRLRVVEDEEQEPTSKQLAKAMGMKTRSIDKVLCKKRESQERIIRSYRGLIVSVASSYQG 220

Query: 1110 KGLSLQDLIQEGNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITRAIAKKSRITRLPGSI 931
            KGLS QDLIQEG++GLL GA+KF+ E+G KLSTYVYWWIRQAI RA+ KKSRI RLP ++
Sbjct: 221  KGLSFQDLIQEGSIGLLRGAEKFDHERGCKLSTYVYWWIRQAIIRALDKKSRIIRLPVNM 280

Query: 930  SELVPRICEANSVLSRRLRKLPTCQEIAEAVNKDVLTVGLALERNREPISLDQPIVAGAS 751
              ++ +I +A +  ++R+++LPT  EIA+ VN    TV L  ER+R PISLD+ +     
Sbjct: 281  CGMMAKITKAKNSFNQRIQRLPTYDEIAQEVNVHAATVKLVCERSRPPISLDRVVTVQGC 340

Query: 750  MSLQEIVAGPNETTPEAMVKKHFRKRDIDKLLKGLCDREVNILRLYYGLNGSTPQSFEEI 571
            MSLQEI+ GP E  PE M+ K   K++++KLLK L DRE  +LRL +GL+G TP+SFEEI
Sbjct: 341  MSLQEIMQGPEEMMPEKMLTKQLMKQEVEKLLKTLSDREAYVLRLRFGLHGETPKSFEEI 400

Query: 570  GRHLKLSRERVRQISYAALTKLRETSMVNDLRAYIL 463
            GR LKLSRERVRQI+  AL+KL++TS  N+L+ YI+
Sbjct: 401  GRLLKLSRERVRQINGIALSKLKQTSTFNNLKLYIV 436