BLASTX nr result
ID: Forsythia23_contig00044168
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00044168
(439 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 79 1e-22
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 80 2e-21
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 72 2e-20
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 72 4e-20
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 67 2e-19
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 78 2e-19
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 79 4e-19
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 74 2e-18
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 73 3e-18
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 71 3e-18
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 71 3e-18
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 71 3e-18
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 75 5e-18
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 72 5e-18
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 73 8e-18
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 77 1e-17
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] 76 3e-17
emb|CAN72238.1| hypothetical protein VITISV_010775 [Vitis vinifera] 69 3e-17
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 74 3e-17
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 74 5e-17
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 78.6 bits (192), Expect(4) = 1e-22
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +2
Query: 119 WLP--MEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFA 292
WL +EM SL +N TW L+P P ++ ++ CKW++K NEG ++PP++K RLVARGF
Sbjct: 829 WLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFT 888
Query: 293 QRE 301
QRE
Sbjct: 889 QRE 891
Score = 33.1 bits (74), Expect(4) = 1e-22
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE I M Q
Sbjct: 921 ELEQMDVKTAFLHGNLEEQILMAQ 944
Score = 32.3 bits (72), Expect(4) = 1e-22
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 4 RLGYIEYLSAALMSFHEA*NHEPKSYKNAMESKQDDDWLVA 126
R GY + ++ AL+ E EP ++ AMES D WL A
Sbjct: 792 RYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEA 832
Score = 28.5 bits (62), Expect(4) = 1e-22
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
RE +D+NE FSP+ VK++S+R+
Sbjct: 890 REGVDFNEIFSPV---VKHSSIRI 910
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 80.1 bits (196), Expect(4) = 2e-21
Identities = 34/57 (59%), Positives = 43/57 (75%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
+EM SL KN TWDLV KP D+ I+GC+WL+KL G ++P RFK RLVA+G+ QRE
Sbjct: 860 DEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQRE 916
Score = 37.4 bits (85), Expect(4) = 2e-21
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKTTFL+GDLEE + M+Q
Sbjct: 946 ELEQMDVKTTFLHGDLEEELYMEQ 969
Score = 25.8 bits (55), Expect(4) = 2e-21
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSL 359
RE +DY E F+P+VK V L
Sbjct: 915 REGVDYQEIFAPVVKHVSIRIL 936
Score = 25.4 bits (54), Expect(4) = 2e-21
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 67 EPKSYKNAMESKQDDDWLVA 126
EP+SY+ AMES+ + W +A
Sbjct: 838 EPQSYQEAMESQDCEKWDMA 857
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 72.0 bits (175), Expect(4) = 2e-20
Identities = 31/57 (54%), Positives = 43/57 (75%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM SL+KN TW+LV P + +VGCKW++K EG++ + R+K RLVA+GF+QRE
Sbjct: 925 EEMESLHKNQTWELVRIPQGRKVVGCKWVFKRKEGTSEGESVRYKARLVAKGFSQRE 981
Score = 36.6 bits (83), Expect(4) = 2e-20
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +1
Query: 349 ITHLG*ELEHFDVKTTFLNGDLEEIICMDQ 438
+ H ELE DVKT FL+G+LEE I M Q
Sbjct: 1005 VAHFDLELEQLDVKTAFLHGELEEDILMSQ 1034
Score = 28.9 bits (63), Expect(4) = 2e-20
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
RE +DYNE FSP+ V++ S+RV
Sbjct: 980 REGVDYNEIFSPV---VRHTSIRV 1000
Score = 27.7 bits (60), Expect(4) = 2e-20
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 19 EYLSAALMSFHEA*NHEPKSYKNAMESKQDDDWLVA 126
E + AL + + EP SYK A+ S + WLVA
Sbjct: 887 EMIGYALHVAEDIESPEPMSYKEAVSSNESAKWLVA 922
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 72.4 bits (176), Expect(4) = 4e-20
Identities = 31/57 (54%), Positives = 43/57 (75%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM SL KN TW+LV KP D+ +VG KW++K +G+ + PR+K RLVA+GF+Q+E
Sbjct: 792 EEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKE 848
Score = 32.7 bits (73), Expect(4) = 4e-20
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 349 ITHLG*ELEHFDVKTTFLNGDLEEIICM 432
+ H EL+ DVKT FL+G+L+E+I M
Sbjct: 872 VAHEDLELDQLDVKTAFLHGELDELIYM 899
Score = 30.4 bits (67), Expect(4) = 4e-20
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 4 RLGYIEYLSAALMSFHEA*NHEPKSYKNAMESKQDDDWLVA 126
R G E + AL E + EPK+Y+ A+ S + D W+ A
Sbjct: 749 RYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKA 789
Score = 28.1 bits (61), Expect(4) = 4e-20
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
+E +DYNE FSP+ VK++S+R+
Sbjct: 847 KEGVDYNEIFSPV---VKHSSIRL 867
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 67.4 bits (163), Expect(4) = 2e-19
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
+EM SL+KN TWDLV +P + I+ CKW++K EG + + ++K R+VARGF QRE
Sbjct: 812 DEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQRE 868
Score = 35.4 bits (80), Expect(4) = 2e-19
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +1
Query: 349 ITHLG*ELEHFDVKTTFLNGDLEEIICMDQ 438
+ H ELE DVKT FL+G+LEE I M Q
Sbjct: 892 VAHQNLELEQLDVKTAFLHGELEEEIYMTQ 921
Score = 30.0 bits (66), Expect(4) = 2e-19
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 1 TRLGYIEYLSAALMSFHEA*NHEPKSYKNAMESKQDDDWLVA 126
TR G+ + + AL E EP +YK A+ S + W A
Sbjct: 768 TRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAA 809
Score = 28.9 bits (63), Expect(4) = 2e-19
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
RE +DYNE FSP+ V++ S+RV
Sbjct: 867 REGVDYNEIFSPV---VRHTSIRV 887
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 77.8 bits (190), Expect(4) = 2e-19
Identities = 30/58 (51%), Positives = 45/58 (77%)
Frame = +2
Query: 128 MEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
+EEM S+ KN TWD++ KP+ + ++GCKW++K G ++PPR+K RLVA+GF+QRE
Sbjct: 843 IEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQRE 900
Score = 33.5 bits (75), Expect(4) = 2e-19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+L+E I M Q
Sbjct: 930 ELEQLDVKTAFLHGNLDEYILMSQ 953
Score = 27.3 bits (59), Expect(4) = 2e-19
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSL 359
RE IDY E FSP+VK V L
Sbjct: 899 REGIDYQEIFSPVVKHVSIRYL 920
Score = 22.7 bits (47), Expect(4) = 2e-19
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 64 HEPKSYKNAMESKQDDDW 117
+EP++Y+ AM S + + W
Sbjct: 821 YEPETYEEAMRSPECEKW 838
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 79.0 bits (193), Expect(3) = 4e-19
Identities = 34/57 (59%), Positives = 43/57 (75%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM SL KN TWDLV KP ++ I+GC+WL+KL G ++P RFK RLVA+G+ QRE
Sbjct: 538 EEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQRE 594
Score = 35.4 bits (80), Expect(3) = 4e-19
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+GDLEE + M+Q
Sbjct: 624 ELEQMDVKTAFLHGDLEEELYMEQ 647
Score = 26.6 bits (57), Expect(3) = 4e-19
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
RE +DY E F+P+ VK+ S+RV
Sbjct: 593 REGVDYQEIFAPV---VKHTSIRV 613
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 73.9 bits (180), Expect(4) = 2e-18
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +2
Query: 128 MEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
+EEM SL KN TWD+V KP +Q ++ C WLYK G ++ PR+K RLVARGF+ RE
Sbjct: 695 IEEMDSLLKNATWDIVDKPKNQKVISCHWLYKKKLGIPGVELPRYKARLVARGFSHRE 752
Score = 32.3 bits (72), Expect(4) = 2e-18
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+L++ + M+Q
Sbjct: 782 ELEQMDVKTAFLHGELDQTLFMEQ 805
Score = 31.2 bits (69), Expect(4) = 2e-18
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 291 HREKIDYNETFSPIVK*VKYNSLRV 365
HRE IDY E FSP+ VK+ S+R+
Sbjct: 750 HREGIDYQEVFSPV---VKHTSIRI 771
Score = 20.4 bits (41), Expect(4) = 2e-18
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +1
Query: 16 IEYLSAALMSFHEA*NHEPKSYKNAMESKQDDDW 117
+E + AL+ E + EP + + E K + W
Sbjct: 657 VEGFAFALVMAEEVESEEPVCFHDVKEDKDWEKW 690
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 72.8 bits (177), Expect(4) = 3e-18
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM S K++TWDL+ KP+ Q ++GCKW++KL G ++ R+K RLVA+GF+Q+E
Sbjct: 754 EEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQE 810
Score = 33.9 bits (76), Expect(4) = 3e-18
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE I M Q
Sbjct: 840 ELEQMDVKTAFLHGNLEERILMSQ 863
Score = 26.6 bits (57), Expect(4) = 3e-18
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 19 EYLSAALMSFHEA*NHEPKSYKNAMESKQDDDW 117
++++ AL + + EPKSY+ A++S + W
Sbjct: 716 DFVAYALATAEDLEEEEPKSYEEALKSSKRKQW 748
Score = 24.3 bits (51), Expect(4) = 3e-18
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
+E IDYNE FS +VK
Sbjct: 809 QEGIDYNEVFSLVVK 823
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 71.2 bits (173), Expect(4) = 3e-18
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQ 295
EEM SL KN TW++VP P + + CKW++K EG +S +PP++K RLVARG++Q
Sbjct: 838 EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892
Score = 36.2 bits (82), Expect(4) = 3e-18
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE I MDQ
Sbjct: 924 ELEQLDVKTAFLHGELEEDIYMDQ 947
Score = 25.0 bits (53), Expect(4) = 3e-18
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 303 IDYNETFSPIVK 338
+DYN+ FSP+VK
Sbjct: 896 VDYNDVFSPVVK 907
Score = 24.6 bits (52), Expect(4) = 3e-18
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 64 HEPKSYKNAMESKQDDDWLVA 126
HEP +YK A+ ++W+ A
Sbjct: 815 HEPATYKEAVRCGDSENWISA 835
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 71.2 bits (173), Expect(4) = 3e-18
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQ 295
EEM SL KN TW++VP P + + CKW++K EG +S +PP++K RLVARG++Q
Sbjct: 838 EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892
Score = 36.2 bits (82), Expect(4) = 3e-18
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE I MDQ
Sbjct: 924 ELEQLDVKTAFLHGELEEDIYMDQ 947
Score = 25.0 bits (53), Expect(4) = 3e-18
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 303 IDYNETFSPIVK 338
+DYN+ FSP+VK
Sbjct: 896 VDYNDVFSPVVK 907
Score = 24.6 bits (52), Expect(4) = 3e-18
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 64 HEPKSYKNAMESKQDDDWLVA 126
HEP +YK A+ ++W+ A
Sbjct: 815 HEPATYKEAVRCGDSENWISA 835
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 71.2 bits (173), Expect(4) = 3e-18
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQ 295
EEM SL KN TW++VP P + + CKW++K EG +S +PP++K RLVARG++Q
Sbjct: 838 EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892
Score = 36.2 bits (82), Expect(4) = 3e-18
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE I MDQ
Sbjct: 924 ELEQLDVKTAFLHGELEEDIYMDQ 947
Score = 25.0 bits (53), Expect(4) = 3e-18
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 303 IDYNETFSPIVK 338
+DYN+ FSP+VK
Sbjct: 896 VDYNDVFSPVVK 907
Score = 24.6 bits (52), Expect(4) = 3e-18
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 64 HEPKSYKNAMESKQDDDWLVA 126
HEP +YK A+ ++W+ A
Sbjct: 815 HEPATYKEAVRCGDSENWISA 835
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 75.5 bits (184), Expect(3) = 5e-18
Identities = 35/72 (48%), Positives = 52/72 (72%)
Frame = +2
Query: 86 MQWKASKMMIGWLPMEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFK 265
M+ K SK + + +EMASL KN TW+LVP P+ V CKWL+K+ +G + +PP++K
Sbjct: 921 MESKDSKKWLSSMD-DEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYK 979
Query: 266 TRLVARGFAQRE 301
+RLVA+GF+Q+E
Sbjct: 980 SRLVAKGFSQKE 991
Score = 32.0 bits (71), Expect(3) = 5e-18
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
EL+ DVKT FL+G+LEE I M Q
Sbjct: 1021 ELDQLDVKTAFLHGNLEEEIYMKQ 1044
Score = 29.6 bits (65), Expect(3) = 5e-18
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
+E IDYNE FSP+ VK+ S+RV
Sbjct: 990 KEGIDYNEVFSPV---VKHKSIRV 1010
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103833265 [Brassica rapa]
Length = 3353
Score = 71.6 bits (174), Expect(4) = 5e-18
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM SL +N+TWDL+ +P Q VGCKW++K G ++P R K RLVA+GF+Q+E
Sbjct: 792 EEMDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKGFSQKE 848
Score = 71.6 bits (174), Expect(4) = 5e-18
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM SL +N+TWDL+ +P Q VGCKW++K G ++P R K RLVA+GF+Q+E
Sbjct: 1491 EEMDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKGFSQKE 1547
Score = 71.6 bits (174), Expect(4) = 5e-18
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM SL +N+TWDL+ +P Q VGCKW++K G ++P R K RLVA+GF+Q+E
Sbjct: 2867 EEMDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKGFSQKE 2923
Score = 35.0 bits (79), Expect(4) = 5e-18
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+L+E I MDQ
Sbjct: 878 ELEQLDVKTAFLHGNLDERILMDQ 901
Score = 35.0 bits (79), Expect(4) = 5e-18
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+L+E I MDQ
Sbjct: 1577 ELEQLDVKTAFLHGNLDERILMDQ 1600
Score = 35.0 bits (79), Expect(4) = 5e-18
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+L+E I MDQ
Sbjct: 2953 ELEQLDVKTAFLHGNLDERILMDQ 2976
Score = 28.5 bits (62), Expect(4) = 5e-18
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
+E IDYNE FSP+VK
Sbjct: 847 KEGIDYNEVFSPVVK 861
Score = 28.5 bits (62), Expect(4) = 5e-18
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
+E IDYNE FSP+VK
Sbjct: 1546 KEGIDYNEVFSPVVK 1560
Score = 28.5 bits (62), Expect(4) = 5e-18
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
+E IDYNE FSP+VK
Sbjct: 2922 KEGIDYNEVFSPVVK 2936
Score = 21.2 bits (43), Expect(4) = 5e-18
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 67 EPKSYKNAMESKQDDDW 117
EPKS++ A +SK W
Sbjct: 770 EPKSFEEAKKSKDWKHW 786
Score = 21.2 bits (43), Expect(4) = 5e-18
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 67 EPKSYKNAMESKQDDDW 117
EPKS++ A +SK W
Sbjct: 1469 EPKSFEEAKKSKDWKHW 1485
Score = 21.2 bits (43), Expect(4) = 5e-18
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 67 EPKSYKNAMESKQDDDW 117
EPKS++ A +SK W
Sbjct: 2845 EPKSFEEAKKSKDWKHW 2861
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 72.8 bits (177), Expect(4) = 8e-18
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
EEM S K++TWDL+ KP+ Q ++GCKW++KL G ++ R+K RLVA+GF+Q+E
Sbjct: 226 EEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQE 282
Score = 34.7 bits (78), Expect(4) = 8e-18
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 349 ITHLG*ELEHFDVKTTFLNGDLEEIICMDQ 438
+ ++ ELE DVKT+FL+G+LEE I M Q
Sbjct: 306 VVNMDYELEQMDVKTSFLHGNLEERILMSQ 335
Score = 24.3 bits (51), Expect(4) = 8e-18
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 19 EYLSAALMSFHEA*NHEPKSYKNAMESKQDDDW 117
++++ AL + + EPKSY+ AM+ + W
Sbjct: 188 DFVAYALATEEDLEIEEPKSYEEAMKRSKRKQW 220
Score = 24.3 bits (51), Expect(4) = 8e-18
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
+E IDYNE FS +VK
Sbjct: 281 QEGIDYNEVFSLVVK 295
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 76.6 bits (187), Expect(3) = 1e-17
Identities = 35/71 (49%), Positives = 47/71 (66%)
Frame = +2
Query: 89 QWKASKMMIGWLPMEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKT 268
+WK K+ EEM SL KN TW LV KP D+ I+GC+WL+K+ G ++P R+K
Sbjct: 81 EWKKWKLATH----EEMDSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKA 136
Query: 269 RLVARGFAQRE 301
RLVA+G+ QRE
Sbjct: 137 RLVAKGYTQRE 147
Score = 33.9 bits (76), Expect(3) = 1e-17
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE + M+Q
Sbjct: 177 ELEQMDVKTAFLHGELEEELYMEQ 200
Score = 25.4 bits (54), Expect(3) = 1e-17
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
RE +DY E F+P+VK
Sbjct: 146 REGVDYQEIFAPVVK 160
>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
Length = 494
Score = 76.3 bits (186), Expect(3) = 3e-17
Identities = 35/71 (49%), Positives = 47/71 (66%)
Frame = +2
Query: 89 QWKASKMMIGWLPMEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKT 268
+WK K+ EEM SL KN TW LV KP D+ I+GC+WL+K+ G ++P R+K
Sbjct: 82 EWKKWKLATH----EEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKA 137
Query: 269 RLVARGFAQRE 301
RLVA+G+ QRE
Sbjct: 138 RLVAKGYTQRE 148
Score = 33.9 bits (76), Expect(3) = 3e-17
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE + M+Q
Sbjct: 178 ELEQMDVKTAFLHGELEEELYMEQ 201
Score = 24.6 bits (52), Expect(3) = 3e-17
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
RE +DY E F+P+ K+ S+R+
Sbjct: 147 REGVDYQEIFAPV---AKHTSIRI 167
>emb|CAN72238.1| hypothetical protein VITISV_010775 [Vitis vinifera]
Length = 807
Score = 68.9 bits (167), Expect(4) = 3e-17
Identities = 29/57 (50%), Positives = 42/57 (73%)
Frame = +2
Query: 131 EEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKTRLVARGFAQRE 301
E+M SL KN TW+LV KP D+ + G KW++K +G+ + PR+K RLVA+GF+Q+E
Sbjct: 552 EKMDSLRKNETWELVTKPKDRKLAGSKWVFKRKQGTLGEEAPRYKARLVAKGFSQKE 608
Score = 32.7 bits (73), Expect(4) = 3e-17
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 349 ITHLG*ELEHFDVKTTFLNGDLEEIICM 432
I H +L+ DVKTTFL+G+L+E+I M
Sbjct: 632 IGHEDLKLDQLDVKTTFLHGELDELIYM 659
Score = 28.1 bits (61), Expect(4) = 3e-17
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 4 RLGYIEYLSAALMSFHEA*NHEPKSYKNAMESKQDDDWL 120
R G + + AL E + EPK+Y+ A+ S + D W+
Sbjct: 509 RYGQAKMTTFALSVAEEIVDMEPKTYQEAINSNEADQWV 547
Score = 24.3 bits (51), Expect(4) = 3e-17
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 294 REKIDYNETFSPIVK 338
+E + YNE FSP+VK
Sbjct: 607 KEGVVYNEIFSPVVK 621
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 73.9 bits (180), Expect(3) = 3e-17
Identities = 34/71 (47%), Positives = 46/71 (64%)
Frame = +2
Query: 89 QWKASKMMIGWLPMEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKT 268
+WK K+ EE SL KN TW LV KP D+ I+GC+WL+K+ G ++P R+K
Sbjct: 757 EWKKWKLATH----EEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKA 812
Query: 269 RLVARGFAQRE 301
RLVA+G+ QRE
Sbjct: 813 RLVAKGYTQRE 823
Score = 35.8 bits (81), Expect(3) = 3e-17
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKTTFL+G+LEE + M+Q
Sbjct: 853 ELEQMDVKTTFLHGELEEELYMEQ 876
Score = 24.6 bits (52), Expect(3) = 3e-17
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 294 REKIDYNETFSPIVK*VKYNSLRV 365
RE +DY E F+P+ K+ S+R+
Sbjct: 822 REGVDYQEIFAPV---AKHTSIRI 842
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 74.3 bits (181), Expect(3) = 5e-17
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +2
Query: 89 QWKASKMMIGWLPMEEMASLYKNYTWDLVPKPDDQSIVGCKWLYKLNEGSTSIDPPRFKT 268
+WK K+ EEM SL KN TW LV KP ++ I+GC+WL+KL GS ++P R+K
Sbjct: 857 EWKKWKLATH----EEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKA 912
Query: 269 RLVARGFAQRE 301
+LVA+G+ RE
Sbjct: 913 QLVAKGYTHRE 923
Score = 33.9 bits (76), Expect(3) = 5e-17
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 367 ELEHFDVKTTFLNGDLEEIICMDQ 438
ELE DVKT FL+G+LEE + M+Q
Sbjct: 953 ELEQMDVKTAFLHGELEEELYMEQ 976
Score = 25.4 bits (54), Expect(3) = 5e-17
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 291 HREKIDYNETFSPIVK*VKYNSLRV 365
HRE +DY E F+ + VK+ S+R+
Sbjct: 921 HREGVDYQEIFALV---VKHTSIRI 942