BLASTX nr result

ID: Forsythia23_contig00039799 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00039799
         (368 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008354068.1| PREDICTED: uncharacterized protein LOC103417...    55   2e-06
emb|CCH50976.1| T4.15 [Malus x robusta]                                54   4e-06
ref|XP_010107867.1| DNA-directed RNA polymerase II subunit [Moru...    57   6e-06

>ref|XP_008354068.1| PREDICTED: uncharacterized protein LOC103417687 [Malus domestica]
          Length = 907

 Score = 54.7 bits (130), Expect(2) = 2e-06
 Identities = 26/50 (52%), Positives = 31/50 (62%)
 Frame = -1

Query: 260 DVMHRIILGWMKWKSGTRFL*DWNTSIKLKSVFYRTFTRLDMLCGSELWS 111
           D+ HRI  GWMKWKS +  L D    +KLK  FYRT  R  ML G+E W+
Sbjct: 734 DLNHRIQAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRXAMLYGTECWA 783



 Score = 23.5 bits (49), Expect(2) = 2e-06
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 112 HQHAKCVYNMKIAEMRAPR*LFGYT 38
           HQH   V+ M +AEMR  R + G+T
Sbjct: 786 HQH---VHKMXVAEMRMLRWMCGHT 807


>emb|CCH50976.1| T4.15 [Malus x robusta]
          Length = 986

 Score = 53.9 bits (128), Expect(2) = 4e-06
 Identities = 26/50 (52%), Positives = 31/50 (62%)
 Frame = -1

Query: 260 DVMHRIILGWMKWKSGTRFL*DWNTSIKLKSVFYRTFTRLDMLCGSELWS 111
           D+ HRI  GWMKWKS +  L D    +KLK  FYRT  R  ML G+E W+
Sbjct: 813 DLNHRIQAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAMLYGTECWA 862



 Score = 23.1 bits (48), Expect(2) = 4e-06
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 112 HQHAKCVYNMKIAEMRAPR*LFGYT 38
           HQH   V+ M +AEMR  R + G+T
Sbjct: 865 HQH---VHKMGVAEMRMLRWMCGHT 886


>ref|XP_010107867.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
           gi|587930138|gb|EXC17267.1| DNA-directed RNA polymerase
           II subunit [Morus notabilis]
          Length = 588

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 28/57 (49%), Positives = 37/57 (64%)
 Frame = -1

Query: 281 QFVNFVKDVMHRIILGWMKWKSGTRFL*DWNTSIKLKSVFYRTFTRLDMLCGSELWS 111
           Q+ +  +D+ H+I +GW+KWK+ T  L D    IKLK  FYRT  RL ML GSE W+
Sbjct: 397 QYEDIEEDIQHKIKVGWVKWKNATGVLCDDKMPIKLKGKFYRT-VRLAMLYGSERWA 452


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