BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00034431
         (1064 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   227   1e-56
ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF,...   197   1e-47
ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF,...   192   3e-46
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   182   3e-43
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              182   3e-43
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   163   2e-37
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   162   3e-37
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   162   4e-37
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   160   1e-36
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   160   1e-36
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   159   3e-36
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   157   9e-36
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   156   2e-35
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   155   4e-35
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   155   6e-35
gb|KDO48081.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   155   6e-35
gb|KDO48080.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   155   6e-35
gb|KDO48079.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   155   6e-35
gb|KDO48078.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   155   6e-35
gb|KDO48077.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   155   6e-35

>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Sesamum indicum]
          Length = 561

 Score =  227 bits (579), Expect = 1e-56
 Identities = 138/273 (50%), Positives = 167/273 (61%), Gaps = 5/273 (1%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           MEAGRSL+SSP QFPPRTH+RNC   SSSSVL+LH+QV PA+TSLST+ L RH P+S+L 
Sbjct: 1   MEAGRSLVSSPPQFPPRTHLRNC---SSSSVLLLHDQVTPALTSLSTT-LARHSPTSVLT 56

Query: 626 QEHYDKSQPLLQQKEDITFQ--STLDRR---LTGAPSGNEANNILDSNQYVNDFQLQLQH 462
           Q+ +++S+ +L  KED  FQ   TL  R   +  A S N+ N  +D +QYVN+FQLQL  
Sbjct: 57  QDQHNESRSMLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLR 116

Query: 461 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 282
              LWYL PSLQTKE Q   +TM+SI  K EK + VE   VV                  
Sbjct: 117 RPELWYLWPSLQTKE-QLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVK 175

Query: 281 STKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRS 102
             +L G  LDDS S R L   P Q  RTV              +PK  IEVQE NH  + 
Sbjct: 176 DAELFGARLDDSSSIRSLTGVPAQ--RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKP 233

Query: 101 EVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           E QRK  +GFDPNDPLRLFL  PETR+LLT+K+
Sbjct: 234 ESQRKSDEGFDPNDPLRLFLRGPETRQLLTSKE 266


>ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Erythranthe guttatus] gi|604329105|gb|EYU34473.1|
           hypothetical protein MIMGU_mgv1a003862mg [Erythranthe
           guttata]
          Length = 559

 Score =  197 bits (500), Expect = 1e-47
 Identities = 121/272 (44%), Positives = 152/272 (55%), Gaps = 4/272 (1%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           ME  RSL+SSP QFP RTH+RNC  SS SSVL+LHEQV PA+TSLST SL RH  +S+LI
Sbjct: 1   METVRSLVSSPPQFPLRTHVRNCS-SSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLI 59

Query: 626 QEHYDKSQPLLQQKEDITFQSTLDRR----LTGAPSGNEANNILDSNQYVNDFQLQLQHC 459
           Q+  ++S+PLL  K+D TFQ T DRR       + S NE N+ +D +QY ND QLQL   
Sbjct: 60  QDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRR 119

Query: 458 SALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXS 279
             LWYL  SLQ KE      T  S+    E   G E ++V+                   
Sbjct: 120 PELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAED 179

Query: 278 TKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSE 99
            +L     D+S S R LV +PVQ    +               PK  +E QE NH  + E
Sbjct: 180 ARL----YDNSSSTRSLVGSPVQ---RIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLE 232

Query: 98  VQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
             +K  +G+DPNDPLRLFL  PET +LL+AK+
Sbjct: 233 PHKKSSEGYDPNDPLRLFLWGPETTQLLSAKE 264


>ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Erythranthe guttatus]
          Length = 558

 Score =  192 bits (489), Expect = 3e-46
 Identities = 119/272 (43%), Positives = 150/272 (55%), Gaps = 4/272 (1%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           ME  RSL+SSP QFP RTH+RNC  SS SSVL+LHEQV PA+TSLST SL RH  +S+LI
Sbjct: 1   METVRSLVSSPPQFPLRTHVRNCS-SSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLI 59

Query: 626 QEHYDKSQPLLQQKEDITFQSTLDRR----LTGAPSGNEANNILDSNQYVNDFQLQLQHC 459
           Q+  ++S+PLL  K+D TFQ T DRR       + S NE N+ +D +QY ND QLQL   
Sbjct: 60  QDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRR 119

Query: 458 SALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXS 279
             LWYL  SLQ KE      T  S+    E   G E ++V+                   
Sbjct: 120 PELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAED 179

Query: 278 TKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSE 99
            +L      D+ S   LV +PVQ    +               PK  +E QE NH  + E
Sbjct: 180 ARLY-----DNSSSTSLVGSPVQ---RIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLE 231

Query: 98  VQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
             +K  +G+DPNDPLRLFL  PET +LL+AK+
Sbjct: 232 PHKKSSEGYDPNDPLRLFLWGPETTQLLSAKE 263


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
           vinifera]
          Length = 567

 Score =  182 bits (463), Expect = 3e-43
 Identities = 119/273 (43%), Positives = 159/273 (58%), Gaps = 5/273 (1%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           MEAG +++SS   FPPRTH RN    SSSSVLMLH+QVAPAV S+ T+ + R  P+S+L+
Sbjct: 7   MEAGTNILSSTPSFPPRTHFRN----SSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLL 61

Query: 626 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTGAPSGNEANNILDSNQYVNDFQLQLQHCSAL 450
           QE  D+ +P  Q  K++ TFQ+TL++R        +  N  D NQY+ +F+ QL     L
Sbjct: 62  QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 121

Query: 449 WYLLPSLQTKEAQS-SPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 273
           WY LPS QT E    S   M+SI    E +M V+P +V+                  + K
Sbjct: 122 WYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAK 181

Query: 272 LLGVDLDDSLSPR-GLVNTP--VQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRS 102
           LLG DL+DS SP  G +++P    +++TV               PK  + V EN+   R+
Sbjct: 182 LLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPK--VAVHENHGSRRA 239

Query: 101 EVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           EVQRKI +G+DP DPLRLFL  PETRKLLTAK+
Sbjct: 240 EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKE 272


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  182 bits (463), Expect = 3e-43
 Identities = 119/273 (43%), Positives = 159/273 (58%), Gaps = 5/273 (1%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           MEAG +++SS   FPPRTH RN    SSSSVLMLH+QVAPAV S+ T+ + R  P+S+L+
Sbjct: 1   MEAGTNILSSTPSFPPRTHFRN----SSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLL 55

Query: 626 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTGAPSGNEANNILDSNQYVNDFQLQLQHCSAL 450
           QE  D+ +P  Q  K++ TFQ+TL++R        +  N  D NQY+ +F+ QL     L
Sbjct: 56  QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 115

Query: 449 WYLLPSLQTKEAQS-SPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 273
           WY LPS QT E    S   M+SI    E +M V+P +V+                  + K
Sbjct: 116 WYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAK 175

Query: 272 LLGVDLDDSLSPR-GLVNTP--VQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRS 102
           LLG DL+DS SP  G +++P    +++TV               PK  + V EN+   R+
Sbjct: 176 LLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPK--VAVHENHGSRRA 233

Query: 101 EVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           EVQRKI +G+DP DPLRLFL  PETRKLLTAK+
Sbjct: 234 EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKE 266


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
           mume]
          Length = 573

 Score =  163 bits (413), Expect = 2e-37
 Identities = 118/280 (42%), Positives = 158/280 (56%), Gaps = 12/280 (4%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSS--SSVLMLHEQVAPAVTSLSTSSLGRHLPSSI 633
           MEAGR  +SS S FP  TH+R+ + SSS  +SVLMLHEQ  PAVTS+  +S+ RH P+S+
Sbjct: 1   MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 632 LIQEHYDKSQPLLQQ-KEDITFQSTLDRRL--TGAPSGNEANNILDSNQYVNDFQLQLQH 462
           L+QE  D+ +PLL   KED T ++TLDR    TGA S +E  +I D    VN  + QL +
Sbjct: 61  LLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGA-SVHEDLDIDDFYPLVNGSKPQLLN 119

Query: 461 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 282
              L  +  SLQT    S+PVT++S+     K M VEP NVV                  
Sbjct: 120 PDIL-DVFSSLQTGAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 281 STKLLGVDLDDSLSP----RGLVNTPVQDKRTVXXXXXXXXXXXXXXL---PKSNIEVQE 123
            ++ +G D D+SLS       L N  V++++TV                  PKS +   E
Sbjct: 179 DSQSMGADFDESLSLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHE 238

Query: 122 NNHPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           +N    S+V +KI +GF+PNDPLRLFL  PETR+LLTAK+
Sbjct: 239 SNSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKE 278


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  162 bits (411), Expect = 3e-37
 Identities = 105/275 (38%), Positives = 149/275 (54%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +TV              + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFDPNDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADE 274


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
           gi|462400636|gb|EMJ06193.1| hypothetical protein
           PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  162 bits (410), Expect = 4e-37
 Identities = 115/276 (41%), Positives = 156/276 (56%), Gaps = 8/276 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSS--SSVLMLHEQVAPAVTSLSTSSLGRHLPSSI 633
           MEAGR  +SS S FP  TH+R+ + SSS  +SVLMLHEQ  PAVTS+  +S+ RH P+S+
Sbjct: 1   MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 632 LIQEHYDKSQPLLQQ-KEDITFQSTLDRRL--TGAPSGNEANNILDSNQYVNDFQLQLQH 462
           L+QE  D+ +PLL   KED T ++ LDR    TGA S +E  +I D    VN  + QL +
Sbjct: 61  LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGA-SVHEDLDIDDFYPLVNSSKPQLLN 119

Query: 461 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 282
              L  +  SLQT    S+P+T++S+     K M VEP NVV                  
Sbjct: 120 HDIL-DVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 281 STKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXL---PKSNIEVQENNHP 111
            ++ +G D DD L    L N  V++++TV                  PKS +   E+N  
Sbjct: 179 DSQSMGADFDD-LGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSF 237

Query: 110 GRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
             S+V++KI +GF+PNDPLRLFL  PETR+LLTAK+
Sbjct: 238 TGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKE 273


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Populus euphratica]
          Length = 557

 Score =  160 bits (406), Expect = 1e-36
 Identities = 102/270 (37%), Positives = 148/270 (54%), Gaps = 2/270 (0%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           MEAGR+L+SS   FP RTH++N   S  SSVL+L EQ  PAVT++ T+S  +H P+S+L+
Sbjct: 1   MEAGRTLLSSSPSFPTRTHLKN---SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLL 57

Query: 626 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTG-APSGNEANNILDSNQYVNDFQLQLQHCSA 453
           QE  D+ +PL    KED   Q+TLDRR T    SG+E  +  + +Q V +F+ QL H   
Sbjct: 58  QEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPT 117

Query: 452 LWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 273
            W LLP  Q  +  S   T QS+ R  +K + VEP +V+                  ++ 
Sbjct: 118 YWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLADNST 177

Query: 272 LLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSEVQ 93
            L     D+L+     +  +++ R V              +PK+   + E      ++VQ
Sbjct: 178 DL-----DNLASTSSSSFSLEEVRIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSADVQ 232

Query: 92  RKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           +++ QGFDPNDPLRLFL  PET++LLTAK+
Sbjct: 233 KRLSQGFDPNDPLRLFLWGPETKQLLTAKE 262


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Pyrus x bretschneideri]
          Length = 573

 Score =  160 bits (405), Expect = 1e-36
 Identities = 110/279 (39%), Positives = 153/279 (54%), Gaps = 11/279 (3%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCV------FSSSSSVLMLHEQVAPAVTSLSTSSLGRHL 645
           ME GR  +SS S FP  TH+R+ +       SSS+SVLMLHEQ   AV S+  + + RH 
Sbjct: 1   MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSSTSVLMLHEQATAAVPSVPITFVARHF 60

Query: 644 PSSILIQEHYDKSQPLLQQ-KEDITFQSTLDR-RLTGAPSGNEANNILDSNQYVNDFQLQ 471
           P+S+L+QE  D+ +PLL   KE+ T Q+TLDR ++    S NE  +I    Q V D + Q
Sbjct: 61  PTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIETKASLNEDLDIDGFYQLVKDSEHQ 120

Query: 470 LQHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXX 291
           L + S L  +  SLQT    S+P+T++ I     K M ++P + V               
Sbjct: 121 LLNRSGLLDVFSSLQTGVKLSAPLTVEPITTASSKHMDIKPSDAVALAKKALSASKEAVS 180

Query: 290 XXXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLP---KSNIEVQEN 120
               +K +G D DDSLS  GL N  V+D++TV                   KS + + E 
Sbjct: 181 FADGSKSMGYDFDDSLSI-GLDNWLVEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHET 239

Query: 119 NHPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           N P  S+V+RKI +GF+ NDPLRLFL  PET++LLTA++
Sbjct: 240 NSPPSSDVRRKINEGFNQNDPLRLFLWGPETKQLLTAEE 278


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  159 bits (402), Expect = 3e-36
 Identities = 104/275 (37%), Positives = 148/275 (53%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +TV              + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  157 bits (398), Expect = 9e-36
 Identities = 103/276 (37%), Positives = 148/276 (53%), Gaps = 8/276 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSS------VLMLHEQVAPAVTSLSTSSLGRHL 645
           MEAGR+L+SSP  FP RT +++ + SS+SS      VLM +EQ APAV S+ TSS+ RH 
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 644 PSSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQ 471
           P+S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q
Sbjct: 61  PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 470 LQHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXX 291
             H   LW L P ++  E  S  +TMQS+    E+++  EP + V               
Sbjct: 121 FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 290 XXXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHP 111
              + KL G +  D +S    +  P+++ +TV              + K  +   E  + 
Sbjct: 181 LAENPKLNGAEFTD-ISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNS 239

Query: 110 GRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
            ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 275


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Nicotiana sylvestris]
          Length = 572

 Score =  156 bits (395), Expect = 2e-35
 Identities = 104/274 (37%), Positives = 146/274 (53%), Gaps = 8/274 (2%)
 Frame = -1

Query: 800 AGRSLISSP-SQFPPRTHI-RNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           AGR+L+SSP + F  +T + R+   S SSSVLML+E VAPA+TS+  + L RH+P+S++ 
Sbjct: 4   AGRNLLSSPPTTFSHKTQLSRSSPSSISSSVLMLYEHVAPALTSVPHAYLVRHVPASVIN 63

Query: 626 QEH-YDKSQPLLQQKEDITFQSTLDRRLT-GAPSGNEANNILDSNQYVNDFQLQLQHCSA 453
            E  ++    L   KE+ T  +T+DRRL   A S  E N+ +DS Q +N  Q+QL     
Sbjct: 64  PEQQFENRLQLHSVKEEKTSLATIDRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPG 123

Query: 452 LWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 273
           L YL  S   KE     +  +S+  K EK M  EPHNVV                   +K
Sbjct: 124 LSYLFSSYHLKEKVPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSK 183

Query: 272 LLGVDLDDSLSPR----GLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGR 105
           LLG + DDS+ P      L +  ++D+R                 P S  +VQE N   R
Sbjct: 184 LLGTNFDDSIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSER 243

Query: 104 SEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
            +V+R++ +  D NDPLR+FL  PETR+LLT K+
Sbjct: 244 PDVRRRVNESIDLNDPLRMFLWGPETRQLLTVKE 277


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Populus euphratica] gi|743810385|ref|XP_011018729.1|
           PREDICTED: RNA polymerase sigma factor sigF,
           chloroplastic isoform X1 [Populus euphratica]
           gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
           polymerase sigma factor sigF, chloroplastic isoform X1
           [Populus euphratica]
          Length = 570

 Score =  155 bits (393), Expect = 4e-35
 Identities = 102/283 (36%), Positives = 148/283 (52%), Gaps = 15/283 (5%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 627
           MEAGR+L+SS   FP RTH++N   S  SSVL+L EQ  PAVT++ T+S  +H P+S+L+
Sbjct: 1   MEAGRTLLSSSPSFPTRTHLKN---SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLL 57

Query: 626 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTG--------------APSGNEANNILDSNQY 492
           QE  D+ +PL    KED   Q+TLDRR T                 SG+E  +  + +Q 
Sbjct: 58  QEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQM 117

Query: 491 VNDFQLQLQHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXX 312
           V +F+ QL H    W LLP  Q  +  S   T QS+ R  +K + VEP +V+        
Sbjct: 118 VENFEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALS 177

Query: 311 XXXXXXXXXXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIE 132
                     ++  L     D+L+     +  +++ R V              +PK+   
Sbjct: 178 ASKHAAFLADNSTDL-----DNLASTSSSSFSLEEVRIVRSRRHLARQSLNRRVPKTKDM 232

Query: 131 VQENNHPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           + E      ++VQ+++ QGFDPNDPLRLFL  PET++LLTAK+
Sbjct: 233 IFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKE 275


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
           chloroplastic-like [Malus domestica]
          Length = 571

 Score =  155 bits (391), Expect = 6e-35
 Identities = 107/278 (38%), Positives = 149/278 (53%), Gaps = 10/278 (3%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCV-----FSSSSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           ME GR  +SS S FP  TH+R+ +      SSS+SVLMLHEQ  PAVTS+  + + RH P
Sbjct: 1   MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSTSVLMLHEQATPAVTSVPITFVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLDR-RLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KE+ T Q+TLDR ++    S NE   I    Q V D + QL
Sbjct: 61  TSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIEARASLNEDLKIDGFYQLVKDSEHQL 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            + S L  +  SLQT+   S+ +TM+ I     K M ++P + V                
Sbjct: 121 LNRSGLLDVFSSLQTRVKSSALLTMEPITTASSKHMDIKPSDAVALAKKALSASKEAVSF 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLP---KSNIEVQENN 117
              +K +G  L       GL N  V+D++TV                   KS + + E N
Sbjct: 181 AEDSKSMGDXL--MTVSEGLDNWLVEDEKTVRSARLLERRRRRLKKKRVSKSKVLIHETN 238

Query: 116 HPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
            P  S+V++KI +G +PNDPLRLFL  PET++LLTAK+
Sbjct: 239 GPTSSDVRKKINEGLNPNDPLRLFLWGPETKQLLTAKE 276


>gb|KDO48081.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 378

 Score =  155 bits (391), Expect = 6e-35
 Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +                + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274


>gb|KDO48080.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 361

 Score =  155 bits (391), Expect = 6e-35
 Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +                + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274


>gb|KDO48079.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 428

 Score =  155 bits (391), Expect = 6e-35
 Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +                + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274


>gb|KDO48078.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 429

 Score =  155 bits (391), Expect = 6e-35
 Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +                + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274


>gb|KDO48077.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 488

 Score =  155 bits (391), Expect = 6e-35
 Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 7/275 (2%)
 Frame = -1

Query: 806 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 642
           MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1   MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 641 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 468
           +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61  TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 467 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 288
            H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 287 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 108
             + KL G +  D +S    +  P+++ +                + K  +   E  +  
Sbjct: 181 AENPKLNGAEFTD-ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239

Query: 107 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQ 3
           ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +
Sbjct: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274