BLASTX nr result

ID: Forsythia23_contig00034196 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00034196
         (614 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007466061.1| PREDICTED: mucin-5B [Lipotes vexillifer]           60   8e-07
gb|AAW27053.1| unknown [Schistosoma japonicum]                         57   9e-06

>ref|XP_007466061.1| PREDICTED: mucin-5B [Lipotes vexillifer]
          Length = 3975

 Score = 60.1 bits (144), Expect = 8e-07
 Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
 Frame = +3

Query: 192  FSSWCWHNHS----ALHCHPCLNRCFQLQFHFDFHQPVLDLRCTSRLCHHIRGRKSHFHH 359
            +SS C H H       H H     C  +  H      +    C S  CHH+     H HH
Sbjct: 1761 YSSHCHHIHCHSPHGHHLHSHSPHCHHIHCHSHHCGHLYSSHCHSPHCHHLHCHSPHGHH 1820

Query: 360  ---HIRHLHWGNCYRHQSPH---------HRDSCYRHQIHLLH*GNCYLHIHQPLHQSSH 503
               H  H H  +C+ H   H         H  S + H+IH     + +LH H P     H
Sbjct: 1821 FHCHSPHCHCIHCHSHHCDHLYSSHCHHIHCQSPHCHRIHCHRPHSHHLHCHSPHSHHIH 1880

Query: 504  LLSGNCHHRYLQNCH 548
              S +CHH +  + H
Sbjct: 1881 SHSPHCHHIHCHSPH 1895


>gb|AAW27053.1| unknown [Schistosoma japonicum]
          Length = 230

 Score = 56.6 bits (135), Expect = 9e-06
 Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 6/133 (4%)
 Frame = +3

Query: 171 YREYFKGFSSWCWHNHSAL-----HCHPCLNRCFQLQFHFDFHQPVLDLRCTSRLCHHIR 335
           Y      +   C H +  L     HCHPCL       FH + H       C      HI 
Sbjct: 27  YHHLLSRYPCHCHHPYHHLCRRHHHCHPCLPYHDHSSFHSNRHSSHFR-SCRHHTSPHIL 85

Query: 336 GRKSHFHHHIRHLHWGNC-YRHQSPHHRDSCYRHQIHLLH*GNCYLHIHQPLHQSSHLLS 512
             KS  HHH  H    +C +RH   HH    YRH  +L H      HIH   H   H   
Sbjct: 86  CHKSRVHHHNHH----HCNHRHHHFHHH---YRHHNNLDH------HIHHHRHHHIHHHH 132

Query: 513 GNCHHRYLQNCHL 551
              HH YL + +L
Sbjct: 133 SYHHHSYLHHSYL 145


Top