BLASTX nr result

ID: Forsythia23_contig00033951 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00033951
         (447 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008339605.1| PREDICTED: pentatricopeptide repeat-containi...    40   1e-06
ref|XP_012845953.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    39   3e-06

>ref|XP_008339605.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Malus domestica]
          Length = 725

 Score = 40.4 bits (93), Expect(3) = 1e-06
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = -2

Query: 386 VL*KMVRYGALPDRIAYNSIIHPDMETGILGKSGSCFKAGILQ-LCACDIHFVIYLFS*R 210
           +L KMVR G +PD I Y SIIH  +E+G L K+   F   + + L    I + + + +  
Sbjct: 544 LLQKMVRDGIVPDHITYTSIIHAHLESGQLMKAREVFYEMLGKGLSPSVITYTVLIHAHA 603

Query: 209 ---RLEEAFRYL*DMEQKGI 159
              RLE A+ Y  +M++K I
Sbjct: 604 AKGRLELAYMYFSEMQEKHI 623



 Score = 34.7 bits (78), Expect(3) = 1e-06
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 151 MIAYNDPINSLCEFRRMDEAYRDSAE-TKLNEHP*IGTIILLINENSDL 8
           ++ YN  IN LC+  RMD+AY+   E  +    P   T  +LINEN ++
Sbjct: 627 VVTYNALINGLCKVMRMDQAYKSFTEMEEKGIAPNKYTYTILINENCNI 675



 Score = 23.1 bits (48), Expect(3) = 1e-06
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
 Frame = -1

Query: 441 YNSFVNGICDF----VIYKKLVSFIEDG 370
           YN FVNGIC        Y  L   + DG
Sbjct: 525 YNIFVNGICKLGNLDEAYTLLQKMVRDG 552


>ref|XP_012845953.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial [Erythranthe guttatus]
          Length = 726

 Score = 38.9 bits (89), Expect(2) = 3e-06
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -2

Query: 386 VL*KMVRYGALPDRIAYNSIIHPDMETGILGKSGSCFK 273
           +L KMVR G +PD I Y SIIH  +E G L K    F+
Sbjct: 540 LLQKMVRNGVVPDHITYTSIIHAHLEIGYLRKGRELFE 577



 Score = 38.5 bits (88), Expect(2) = 3e-06
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
 Frame = -3

Query: 259 SSVPVTYTLLYTCSHKGGWRKHFDIYKIWSRR--EFAIM---IAYNDPINSLCEFRRMDE 95
           S   VTYT+L   SH G  ++  D+ K +     E  I+   I YN  +N LC+ R+MDE
Sbjct: 585 SPTVVTYTVLIH-SHAG--KEKLDLAKNYFSXMLENGILPNVITYNALLNGLCKSRKMDE 641

Query: 94  AYRDSAETKLNE-HP*IGTIILLINENSDL 8
           AYR  +E +     P   T  +LI EN D+
Sbjct: 642 AYRTFSEMQSKGIFPNKYTYTILIYENCDI 671


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