BLASTX nr result
ID: Forsythia23_contig00032270
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00032270
(725 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905... 70 4e-27
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera] 64 6e-23
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 71 5e-22
emb|CAN76388.1| hypothetical protein VITISV_037906 [Vitis vinifera] 62 1e-21
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 54 8e-21
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 54 8e-21
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 72 9e-21
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 71 4e-20
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 71 4e-20
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 58 5e-20
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 57 2e-19
ref|XP_010097937.1| Retrovirus-related Pol polyprotein from tran... 73 3e-19
emb|CAN83832.1| hypothetical protein VITISV_039455 [Vitis vinifera] 61 4e-19
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 69 6e-19
emb|CAN65235.1| hypothetical protein VITISV_040876 [Vitis vinifera] 66 1e-18
emb|CAN81756.1| hypothetical protein VITISV_020923 [Vitis vinifera] 50 4e-18
emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera] 57 5e-18
emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera] 55 6e-18
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 52 7e-18
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 54 1e-17
>ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp.
vulgaris]
Length = 2676
Score = 70.1 bits (170), Expect(3) = 4e-27
Identities = 37/79 (46%), Positives = 51/79 (64%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
++N++K +LNS F+M+ L K+ LGMEI RDR K L L Q YI K L +F ++++K
Sbjct: 879 EVNNLKKLLNSGFDMKNLGEAKKILGMEIWRDRSKGVLYLSQRRYIEKVLERFSMNNAKP 938
Query: 499 VALALACHFKLSKY*YPTS 443
V+ L HFKLSK P S
Sbjct: 939 VSTPLGSHFKLSKELCPQS 957
Score = 60.1 bits (144), Expect(3) = 4e-27
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Frame = -3
Query: 297 HWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y-------KSTIAYVFTP 139
HW+ALKWL+RYLK CL+ G+ G + Y KST YVFT
Sbjct: 1005 HWEALKWLLRYLKGTSHVCLEFGQDANGVIGYYD------SDYGGDLDDRKSTSGYVFTL 1058
Query: 138 CTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEINA 1
T +SW+ LQ +VALS E++A E+ KEA LK ++ EI++
Sbjct: 1059 GGTAVSWQSLLQDVVALSTTEAEFIAITESFKEAKRLKGLVGEISS 1104
Score = 39.3 bits (90), Expect(3) = 4e-27
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
+ Y++ VGS++Y MVC D+A +S +SR M+ PG
Sbjct: 967 IPYTSAVGSVMYAMVCSRPDIAQAVSIMSRYMSRPG 1002
>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
Length = 1317
Score = 63.9 bits (154), Expect(3) = 6e-23
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I+++K L+ F M+ L VKR LG+ I RDR + LC+ Q YI K L+KF + +K
Sbjct: 951 RIDNLKKQLSKSFAMKDLGPVKRILGIRIERDRASKKLCMLQKQYIEKVLAKFNMSKAKV 1010
Query: 499 VALALACHFKLSKY*YPTS 443
V+ LA HFKLS P++
Sbjct: 1011 VSSPLASHFKLSSRHNPST 1029
Score = 47.0 bits (110), Expect(3) = 6e-23
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = -3
Query: 297 HWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y-------KSTIAYVFTP 139
HW+A+KW+MRYL+ + ++ G G +L+ + +ST +Y+ T
Sbjct: 1077 HWEAVKWIMRYLRG-----ISKLKLTFG-SGKPILVGYTDSDMAGDVDNRRSTSSYLMTF 1130
Query: 138 CTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+SW+ +LQ VALS EY+AA EA KE L +K + E+
Sbjct: 1131 SGGAVSWQSRLQKCVALSTTEAEYIAAAEACKELLWMKCFMQEL 1174
Score = 44.3 bits (103), Expect(3) = 6e-23
Identities = 17/38 (44%), Positives = 30/38 (78%)
Frame = -1
Query: 422 KKVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
++V Y++VVGS++Y MVCI D+A+ + +SR +++PG
Sbjct: 1037 RRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPG 1074
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 71.2 bits (173), Expect(3) = 5e-22
Identities = 33/72 (45%), Positives = 50/72 (69%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
++N +K++L+ EF+M+ LD K+ +GMEIHRDR R L L Q SY+ + +F + D+K
Sbjct: 373 EVNKLKSLLSKEFDMKELDAAKKIIGMEIHRDRASRRLWLSQYSYVKRVFERFNMDDAKP 432
Query: 499 VALALACHFKLS 464
V+ LA HF+LS
Sbjct: 433 VSTPLANHFRLS 444
Score = 43.9 bits (102), Expect(3) = 5e-22
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -1
Query: 419 KVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
KV Y++ VG +Y MVCI D+AHT+S +S+ +++PG
Sbjct: 460 KVPYASAVGCFMYAMVCIRPDLAHTVSVVSKFLSNPG 496
Score = 37.0 bits (84), Expect(3) = 5e-22
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Frame = -3
Query: 297 HWKALKWLMRYLKEN*--A*CLKQVVKE*GLKGMWMLILW**R*Y------------KST 160
HW A+KW+ RYL+ + + ++G Y +ST
Sbjct: 499 HWDAIKWIFRYLRGXTYYGIMFSKQQSDPSIRG-----------YVDADYAGDLDDRRST 547
Query: 159 IAYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL 34
YVFT I WK +Q +VAL EY+A EA KE+L
Sbjct: 548 TGYVFTLGGGPICWKSMVQSLVALFTTESEYMAIAEATKESL 589
>emb|CAN76388.1| hypothetical protein VITISV_037906 [Vitis vinifera]
Length = 1148
Score = 62.4 bits (150), Expect(3) = 1e-21
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
KIN++K L+ +F M+ L K+ LGM I RD+ L L QS Y+ K LS+F ++++K
Sbjct: 922 KINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKL 981
Query: 499 VALALACHFKLSK 461
++ L HFKLSK
Sbjct: 982 MSTPLGSHFKLSK 994
Score = 45.8 bits (107), Expect(3) = 1e-21
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CL----KQVVKE*GLKGMWMLILW**R*YKSTIAYVFTPCT 133
+HW+A+KW++RYLK + CL + + KST +VFT
Sbjct: 1047 QHWEAVKWILRYLKGSLDTCLCFTDADFASDIDSR-------------KSTTGFVFTLDD 1093
Query: 132 TCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
ISW +Q IV LS EYV EA K+ + L L+++
Sbjct: 1094 ITISWASNIQKIVNLSTTEAEYVTPTEAGKKMIWLHGFLDQL 1135
Score = 42.7 bits (99), Expect(3) = 1e-21
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = -1
Query: 419 KVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
KV Y++ +GS++Y MVC D+AH + +SR M+ PG
Sbjct: 1009 KVPYASAIGSLMYVMVCTRPDIAHAVGVVSRFMSRPG 1045
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 54.3 bits (129), Expect(3) = 8e-21
Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y------------KSTI 157
EHWKA++W+ RYL + CL+ GL G Y +S
Sbjct: 1057 EHWKAVQWIFRYLHGTSSACLQFGRSRDGLVG-----------YVDSDFAGDLDRRRSLT 1105
Query: 156 AYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
YVFT +SWK LQ VALS EY+A EA KEA+ L+ + E+
Sbjct: 1106 GYVFTIGGCAVSWKASLQATVALSTTEAEYIAISEACKEAIWLRDLYTEL 1155
Score = 52.0 bits (123), Expect(3) = 8e-21
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K L+SEFEM+ L K+ LGMEI R+R L L Q YI K L +F +HD+K
Sbjct: 952 EIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAKP 1011
Query: 499 V 497
+
Sbjct: 1012 I 1012
Score = 41.6 bits (96), Expect(3) = 8e-21
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
V YS+ VGS++Y M+C D++H +S +SR M +PG
Sbjct: 1020 VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPG 1055
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 54.3 bits (129), Expect(3) = 8e-21
Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y------------KSTI 157
EHWKA++W+ RYL + CL+ GL G Y +S
Sbjct: 889 EHWKAVQWIFRYLHGTSSACLQFGRSRDGLVG-----------YVDSDFAGDLDRRRSLT 937
Query: 156 AYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
YVFT +SWK LQ VALS EY+A EA KEA+ L+ + E+
Sbjct: 938 GYVFTIGGCAVSWKASLQATVALSTTEAEYIAISEACKEAIWLRDLYTEL 987
Score = 52.0 bits (123), Expect(3) = 8e-21
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K L+SEFEM+ L K+ LGMEI R+R L L Q YI K L +F +HD+K
Sbjct: 784 EIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAKP 843
Query: 499 V 497
+
Sbjct: 844 I 844
Score = 41.6 bits (96), Expect(3) = 8e-21
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
V YS+ VGS++Y M+C D++H +S +SR M +PG
Sbjct: 852 VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPG 887
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 72.4 bits (176), Expect(2) = 9e-21
Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K +L+SEF+M+ L K+ LGMEI RDR L L Q +YI K L +F + ++K+
Sbjct: 1029 EITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKA 1088
Query: 499 VALALACHFKLSKY*YPTSVFDIGYIKRF-----ITLMLWALSCTQWCVSY*M 356
V+ +A HFKLS P++ +I Y+ R + +++A+ C++ +SY M
Sbjct: 1089 VSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1141
Score = 55.5 bits (132), Expect(2) = 9e-21
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGM----WMLILW**R*YKSTIAYVFTPCT 133
EHW+AL+W+ RYL+ CLK + GL G + L +S YVFT +
Sbjct: 1154 EHWRALQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADL---DRRRSLTGYVFTIGS 1210
Query: 132 TCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEIN 4
+SW+ LQ +VALS EY+A EA KE + LK + E++
Sbjct: 1211 CAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1253
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 71.2 bits (173), Expect(2) = 4e-20
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K +L+SEF+M+ L K+ LGMEI RDR L L Q +YI K L +F + ++K+
Sbjct: 1027 EITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKA 1086
Query: 499 VALALACHFKLSKY*YPTSVFDIGYIKRF-----ITLMLWALSCTQWCVSY*M 356
V+ +A HFKLS P+ +I Y+ R + +++A+ C++ +SY M
Sbjct: 1087 VSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1139
Score = 54.3 bits (129), Expect(2) = 4e-20
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGM----WMLILW**R*YKSTIAYVFTPCT 133
EHW+A++W+ RYL+ CLK + GL G + L +S YVFT +
Sbjct: 1152 EHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADL---DRRRSLTGYVFTIGS 1208
Query: 132 TCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEIN 4
+SW+ LQ +VALS EY+A EA KE + LK + E++
Sbjct: 1209 CAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1251
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 71.2 bits (173), Expect(2) = 4e-20
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K +L+SEF+M+ L K+ LGMEI RDR L L Q +YI K L +F + ++K+
Sbjct: 1027 EITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKA 1086
Query: 499 VALALACHFKLSKY*YPTSVFDIGYIKRF-----ITLMLWALSCTQWCVSY*M 356
V+ +A HFKLS P+ +I Y+ R + +++A+ C++ +SY M
Sbjct: 1087 VSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1139
Score = 54.3 bits (129), Expect(2) = 4e-20
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGM----WMLILW**R*YKSTIAYVFTPCT 133
EHW+A++W+ RYL+ CLK + GL G + L +S YVFT +
Sbjct: 1152 EHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADL---DRRRSLTGYVFTIGS 1208
Query: 132 TCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEIN 4
+SW+ LQ +VALS EY+A EA KE + LK + E++
Sbjct: 1209 CAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1251
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 58.2 bits (139), Expect(3) = 5e-20
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = -2
Query: 676 INHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKSV 497
I+ +K L EFEM+ L + LGM+IHRDR R + L Q +Y+ K LS+F + D KS+
Sbjct: 992 IDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSI 1051
Query: 496 ALALACHFKLSKY*YPTS 443
+ L + K+S P++
Sbjct: 1052 STPLPINLKVSSSMSPSN 1069
Score = 47.4 bits (111), Expect(3) = 5e-20
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = -3
Query: 168 KSTIAYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
KST YVF +SW +LQ +VA S EYVAA +A KEA+ LK +L E+
Sbjct: 1161 KSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEEL 1214
Score = 39.7 bits (91), Expect(3) = 5e-20
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 419 KVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPGL-IWNIGK 288
+V Y++ VGS+++ M+C D+A + +SR MA+PG WN K
Sbjct: 1078 RVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVK 1122
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103833265
[Brassica rapa]
Length = 3353
Score = 57.4 bits (137), Expect(3) = 2e-19
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K+ L+ EFEM+ L + R LGM+I RDR K L L Q +YI K L F + +SK
Sbjct: 982 EIQIMKDRLSREFEMKDLGKASRILGMDIIRDRKKGTLVLSQENYIEKVLKSFGMENSKP 1041
Query: 499 VALALACHFKL 467
V LA FKL
Sbjct: 1042 VTTPLATQFKL 1052
Score = 57.4 bits (137), Expect(3) = 2e-19
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K+ L+ EFEM+ L + R LGM+I RDR K L L Q +YI K L F + +SK
Sbjct: 3057 EIQIMKDRLSREFEMKDLGKASRILGMDIIRDRKKGTLVLSQENYIEKVLKSFGMENSKP 3116
Query: 499 VALALACHFKL 467
V LA FKL
Sbjct: 3117 VTTPLATQFKL 3127
Score = 49.3 bits (116), Expect(3) = 2e-19
Identities = 30/99 (30%), Positives = 49/99 (49%)
Frame = -3
Query: 303 LEHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*YKSTIAYVFTPCTTCI 124
++HW+A+KW+M+YL+++ + + +S YVF +
Sbjct: 1106 MDHWQAVKWIMKYLRDS------DYSADLDRR-------------RSVTGYVFKVWGNTV 1146
Query: 123 SWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
SW+ LQ +VALS EY+A A KEA+ LK + E+
Sbjct: 1147 SWRSNLQSVVALSTTEAEYMALSTATKEAIWLKAICEEL 1185
Score = 49.3 bits (116), Expect(3) = 2e-19
Identities = 30/99 (30%), Positives = 49/99 (49%)
Frame = -3
Query: 303 LEHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*YKSTIAYVFTPCTTCI 124
++HW+A+KW+M+YL+++ + + +S YVF +
Sbjct: 3181 MDHWQAVKWIMKYLRDS------DYSADLDRR-------------RSVTGYVFKVWGNTV 3221
Query: 123 SWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
SW+ LQ +VALS EY+A A KEA+ LK + E+
Sbjct: 3222 SWRSNLQSVVALSTTEAEYMALSTATKEAIWLKAICEEL 3260
Score = 36.2 bits (82), Expect(3) = 2e-19
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPGL 306
V Y++ VGS++Y M+ D+AH + +SR M+ PG+
Sbjct: 1070 VPYASAVGSLMYAMIGSRPDLAHAVGVVSRFMSKPGM 1106
Score = 36.2 bits (82), Expect(3) = 2e-19
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPGL 306
V Y++ VGS++Y M+ D+AH + +SR M+ PG+
Sbjct: 3145 VPYASAVGSLMYAMIGSRPDLAHAVGVVSRFMSKPGM 3181
Score = 57.4 bits (137), Expect(3) = 3e-19
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K+ L+ EFEM+ L + R LGM+I RDR K L L Q +YI K L F + +SK
Sbjct: 1681 EIQIMKDRLSREFEMKDLGKASRILGMDIIRDRKKGTLVLSQENYIEKVLKSFGMENSKP 1740
Query: 499 VALALACHFKL 467
V LA FKL
Sbjct: 1741 VTTPLATQFKL 1751
Score = 48.9 bits (115), Expect(3) = 3e-19
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = -3
Query: 303 LEHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGM----WMLILW**R*YKSTIAYVFTPC 136
++HW+A+KW+M+YL+ L+ ++G + L +S YVF
Sbjct: 1805 MDHWQAVKWIMKYLRGESKTSLRFKSSVRSIEGFSDSDYSADL---DRRRSVTGYVFKVW 1861
Query: 135 TTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+SW+ LQ +VALS EY+A A KEA+ LK + E+
Sbjct: 1862 GNTVSWRSNLQSVVALSTTEAEYMALSTATKEAIWLKAICEEL 1904
Score = 36.2 bits (82), Expect(3) = 3e-19
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPGL 306
V Y++ VGS++Y M+ D+AH + +SR M+ PG+
Sbjct: 1769 VPYASAVGSLMYAMIGSRPDLAHAVGVVSRFMSKPGM 1805
>ref|XP_010097937.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis] gi|587884397|gb|EXB73293.1|
Retrovirus-related Pol polyprotein from transposon TNT
1-94 [Morus notabilis]
Length = 1822
Score = 72.8 bits (177), Expect(2) = 3e-19
Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K L SEFEM+ L K+ LGMEI RDR + L + Q Y+ K L +F + +SKS
Sbjct: 374 EIQKLKRQLGSEFEMKDLGPAKKILGMEIIRDRKQGTLFVSQCGYLWKVLKRFGMLESKS 433
Query: 499 VALALACHFKLSKY*YP------TSVFDIGYIKRFITLMLWALSCTQWCVSY*MWPIQLV 338
V LA HFKLS P SV I Y +LM +A+ CT+ + L
Sbjct: 434 VQTPLAGHFKLSTRMSPMTDEEKVSVEKIPYASAVDSLM-YAMVCTR---------LNLA 483
Query: 337 H*ADLWPTLV*FGTLESIKMVDEIF-ERKLGLVFKTS-SEGVRLKGYVDADF 188
+ A L + E + V + +GL++K ++G +L+GYVDADF
Sbjct: 484 YSASLVSRFMSNSGKEHWEAVKWVQGASNVGLLYKRMRNDGEKLRGYVDADF 535
Score = 49.7 bits (117), Expect(2) = 3e-19
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = -3
Query: 168 KSTIAYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+S Y+FT +SWK QLQ +VALS EY+AA E +KEA+ LK ++ E+
Sbjct: 543 RSLSGYIFTLFGCTVSWKAQLQLVVALSTTEAEYIAATEGVKEAMWLKGLIGEL 596
>emb|CAN83832.1| hypothetical protein VITISV_039455 [Vitis vinifera]
Length = 319
Score = 61.2 bits (147), Expect(3) = 4e-19
Identities = 28/68 (41%), Positives = 46/68 (67%)
Frame = -2
Query: 688 SAHKINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHD 509
S ++N +K++L+ EF+M+ LD K+ LGMEIH+DR LCL Q SY+ + L +F + +
Sbjct: 79 SMSEVNKLKSLLSKEFDMKDLDATKKILGMEIHKDRALGRLCLSQHSYVERVLERFNMDN 138
Query: 508 SKSVALAL 485
+K ++ L
Sbjct: 139 AKPLSTPL 146
Score = 43.1 bits (100), Expect(3) = 4e-19
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -3
Query: 168 KSTIAYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+ST+ YVFT I WK +Q +VALS I EY+A E KE+L L ++ E+
Sbjct: 244 RSTMGYVFTFGGGLICWKFMIQSLVALSTIESEYMAVAEVAKESLSLTGLVKEL 297
Score = 37.7 bits (86), Expect(3) = 4e-19
Identities = 15/45 (33%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = -1
Query: 419 KVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPGLI-WNIGK 288
KV Y++ VG ++Y MVC ++ +S +S+ +++PG++ W++ K
Sbjct: 159 KVPYASAVGCLMYAMVCTRPNLVQVVSVVSKFLSNPGILHWDVVK 203
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 68.9 bits (167), Expect(2) = 6e-19
Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I +K +L+SEF+M+ L K+ L MEI RDR L L Q +YI K L +F + ++K+
Sbjct: 1027 EITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKA 1086
Query: 499 VALALACHFKLSKY*YPTSVFDIGYIKRF-----ITLMLWALSCTQWCVSY*M 356
V+ +A HFKLS P++ +I Y+ R + +++A+ C++ +SY M
Sbjct: 1087 VSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1139
Score = 52.8 bits (125), Expect(2) = 6e-19
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGM----WMLILW**R*YKSTIAYVFTPCT 133
EHW+ ++W+ RYL+ CLK + GL G + L +S YVFT +
Sbjct: 1152 EHWRVVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADL---DRRRSLTGYVFTIGS 1208
Query: 132 TCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEIN 4
+SW+ LQ +VALS EY+A EA KE + LK + E++
Sbjct: 1209 CAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELS 1251
>emb|CAN65235.1| hypothetical protein VITISV_040876 [Vitis vinifera]
Length = 1379
Score = 65.9 bits (159), Expect(2) = 1e-18
Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
KIN++K L+ +F M+ L K+ LGM I RD+ L L QS Y+ K LS+F ++++K
Sbjct: 535 KINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKP 594
Query: 499 VALALACHFKLSKY*YPTSVFDIGYIKRF-----ITLMLWALSCTQ 377
V+ L HFKLSK P + + ++ + I +++A+ CT+
Sbjct: 595 VSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTR 640
Score = 55.1 bits (131), Expect(2) = 1e-18
Identities = 40/98 (40%), Positives = 51/98 (52%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*YKSTIAYVFTPCTTCIS 121
+HW+A+KW++RYLK + CL + G KST +VFT T IS
Sbjct: 660 QHWEAVKWILRYLKGSLDTCL--CFTDADFAGDIDS-------RKSTTGFVFTLGGTXIS 710
Query: 120 WK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
W LQ IV LS EYVAA EA KE + L L+E+
Sbjct: 711 WTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDEL 748
>emb|CAN81756.1| hypothetical protein VITISV_020923 [Vitis vinifera]
Length = 256
Score = 50.4 bits (119), Expect(3) = 4e-18
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
KI+ +K L+ FEM+ L + L ++I +DR L L Q SY+ K L KF + +K
Sbjct: 30 KIDKLKKELSKSFEMKDLGPASQILSIKIFQDRTNVKLWLSQESYMEKVLDKFNMGKAKP 89
Query: 499 VALALACHFKLSKY*YPTS 443
V+ L H KLS P+S
Sbjct: 90 VSYPLRSHLKLSSKQSPSS 108
Score = 46.6 bits (109), Expect(3) = 4e-18
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CL-----KQVVKE*GLKGMWMLILW**R*YKSTIAYVFTPC 136
EHW A+KW+ R+L+ CL K V+ M + KST Y+ T
Sbjct: 155 EHWAAVKWIHRFLRGTSKTCLCFGTNKLVLVRCTDADMARDV----DSRKSTSGYLITFS 210
Query: 135 TTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+SW+ +LQ VALS + EY+A +A KE L +K L E+
Sbjct: 211 GGAVSWQSRLQKYVALSTMEVEYIAFTKASKELLWMKKFLQEL 253
Score = 41.6 bits (96), Expect(3) = 4e-18
Identities = 15/37 (40%), Positives = 28/37 (75%)
Frame = -1
Query: 422 KKVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADP 312
+KV Y++ VGS++Y MVC LD+AH + +++ +++P
Sbjct: 116 RKVPYASAVGSLMYVMVCTRLDIAHVVRVVNKFLSNP 152
>emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]
Length = 809
Score = 56.6 bits (135), Expect(3) = 5e-18
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
+I+ +K L+ F M+ L VK+ LG+ I RDR + L + Q YI K L +F + +K
Sbjct: 500 RIDKLKKQLSKSFSMKDLGPVKKILGIRIERDRASKKLYMSQEQYIEKVLERFNMSKAKV 559
Query: 499 VALALACHFKLSK 461
V LA HFKLS+
Sbjct: 560 VNSPLASHFKLSR 572
Score = 44.3 bits (103), Expect(3) = 5e-18
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = -3
Query: 297 HWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y-------KSTIAYVFTP 139
HW+A+KW+MRYL+ LK + G +L+ + + T+ Y+ T
Sbjct: 626 HWEAVKWIMRYLQGTSK--LKLTFES----GKPVLVSYTDSNMAGDVDNRRPTLGYLMTF 679
Query: 138 CTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+ W+ +LQ VALS EY+AA EA KE L +K ++E+
Sbjct: 680 SGGAVFWQSRLQKSVALSTTEAEYIAAAEACKELLWMKRFIHEL 723
Score = 37.4 bits (85), Expect(3) = 5e-18
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -1
Query: 422 KKVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG-LIWNIGK 288
++V Y++ VGS++ MVC D+A+ I +SR +++PG L W K
Sbjct: 586 RRVPYASAVGSLMNPMVCTRPDIAYVIGVVSRFLSNPGRLHWEAVK 631
>emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera]
Length = 328
Score = 54.7 bits (130), Expect(3) = 6e-18
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = -2
Query: 679 KINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKS 500
KI+ +KN L+ FEM+ L + L ++I +DR R L L Q SYI K L KF + +K
Sbjct: 57 KIDKLKNELSKSFEMKDLGSASQILSIKISQDRTYRKLWLSQESYIEKVLDKFNMGKAKL 116
Query: 499 VALALACHFKLS 464
V+ L H KLS
Sbjct: 117 VSSPLGSHLKLS 128
Score = 50.4 bits (119), Expect(3) = 6e-18
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = -3
Query: 300 EHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWML-ILW**R*YKSTIAYVFTPCTTCI 124
EHW +KW++RYL+ CL + L G ++ KST Y+ T +
Sbjct: 181 EHWVIVKWILRYLRNTSKTCLCFGTDKLVLVGCTDANMVGDIDSRKSTFGYLITFSRRIV 240
Query: 123 SWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
SW+ +LQ VALS I EY+ EA E L +K L E+
Sbjct: 241 SWQSRLQKYVALSTIKVEYIVITEASNELLWMKMFLQEL 279
Score = 33.1 bits (74), Expect(3) = 6e-18
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = -1
Query: 422 KKVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
+KV Y++V G ++YT +C D+A+ + +SR +++PG
Sbjct: 143 RKVPYASVTGILMYT-ICTGPDIANVVGVVSRFISNPG 179
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 52.4 bits (124), Expect(3) = 7e-18
Identities = 29/69 (42%), Positives = 40/69 (57%)
Frame = -2
Query: 676 INHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHDSKSV 497
+ +K L+SEFEM+ L ++ LGMEI R+R + L L Q SY+ K L F + + K V
Sbjct: 531 VKELKERLSSEFEMKDLGPARKILGMEITRNREENILELSQRSYLQKVLKTFRMDECKPV 590
Query: 496 ALALACHFK 470
LA H K
Sbjct: 591 KTPLAPHMK 599
Score = 47.8 bits (112), Expect(3) = 7e-18
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Frame = -3
Query: 336 IKQIYGRPWFNLEHWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y---- 169
I + +P N HW +KW++RY+K + L Q +E G +++ + +
Sbjct: 645 ISRFMSKPLMN--HWLGVKWVLRYIKGSIDSRL-QYKRE----GDFVVTGYCDSDHSGDR 697
Query: 168 ---KSTIAYVFTPCTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+ST Y FT +SW+ LQ +VALS EY+A EA KEA LK ++NE+
Sbjct: 698 DRSRSTTGYTFTVGGNIVSWRSCLQPVVALSSTEAEYIALTEAAKEAYWLKDLMNEL 754
Score = 37.7 bits (86), Expect(3) = 7e-18
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -1
Query: 422 KKVHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADP 312
K + Y+N VGSI+Y+M+ D+AH + +SR M+ P
Sbjct: 616 KSIPYANAVGSIMYSMIGSRPDLAHPVGVISRFMSKP 652
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 54.3 bits (129), Expect(3) = 1e-17
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = -2
Query: 688 SAHKINHIKNVLNSEFEMEYLDRVKRTLGMEIHRDRIKRFLCLKQSSYITKSLSKFYVHD 509
S +IN +K L++EFEM+ + R LG++I+RDR L L Q YI K L +F +
Sbjct: 1047 SKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSG 1106
Query: 508 SKSVALALACHFKLS 464
+K + HFKL+
Sbjct: 1107 AKMTNAPVGAHFKLA 1121
Score = 48.1 bits (113), Expect(3) = 1e-17
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = -3
Query: 297 HWKALKWLMRYLKEN*A*CLKQVVKE*GLKGMWMLILW**R*Y-------KSTIAYVFTP 139
HW+A+KW+MRYLK A L V + + + + + Y +S YVFT
Sbjct: 1173 HWEAVKWVMRYLKG--AQDLNLVFTK---EKDFTVTGYCDSNYAADLDRRRSISGYVFTI 1227
Query: 138 CTTCISWK*QLQYIVALSIIGFEYVAAREAMKEAL*LKWVLNEI 7
+SWK LQ +VA+S EY+A EA KEA+ +K +L ++
Sbjct: 1228 GGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDM 1271
Score = 34.7 bits (78), Expect(3) = 1e-17
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -1
Query: 416 VHYSNVVGSIVYTMVCIILDVAHTISTLSRSMADPG 309
V YS+ VGSI+Y M+ D+A+ I +SR M+ PG
Sbjct: 1135 VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPG 1170