BLASTX nr result
ID: Forsythia23_contig00029952
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00029952
(1081 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 279 3e-72
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 245 2e-65
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 239 1e-64
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 238 2e-64
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 238 2e-64
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 244 3e-64
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 234 1e-62
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 243 1e-61
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 238 3e-61
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 236 9e-61
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera] 229 2e-60
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 220 5e-58
ref|XP_012453597.1| PREDICTED: uncharacterized protein LOC105775... 226 7e-58
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 218 7e-57
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 215 9e-57
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 217 9e-57
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 217 9e-57
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 219 1e-56
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo... 223 1e-56
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 215 2e-56
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 279 bits (713), Expect = 3e-72
Identities = 151/361 (41%), Positives = 215/361 (59%), Gaps = 17/361 (4%)
Frame = -2
Query: 1032 PIKSKI*FACYFQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTH 853
P+ +K F +F++F+E+ ++ IK VQ+DWG E++ L GI RHPCPH H
Sbjct: 17 PLTAKSDALQVFTEFKSFIEKHLQQHIKTVQTDWGGEFRTFASYLTQFGIQFRHPCPHIH 76
Query: 852 RQNGKSERKHRHVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLF 673
QNG+ ERKHRH+V++GLTLLA A++PLKFWW++F T+VFLINRLP+P L++ S Y LF
Sbjct: 77 HQNGRIERKHRHIVDIGLTLLAQANLPLKFWWNAFHTAVFLINRLPTPTLNNISPYQKLF 136
Query: 672 NKKPDYKHFKFFGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQ 493
+ PDY + FGCAC+P+LRPYNRHK+ F ++RCVF+GYS+ HKGY+ L +GR++++
Sbjct: 137 QQVPDYVSLRVFGCACFPYLRPYNRHKLSFRSNRCVFIGYSSSHKGYQCLHSSGRVYVSN 196
Query: 492 SVTFDEYSFPF----SLNFVTSPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSL 325
V FDE SFP+ + + SP +DIS +E+ +L
Sbjct: 197 HVIFDEQSFPYVSGSDFSSIAQSCSP------------------LDIS-----SESKVTL 233
Query: 324 VIVPHIFPNQSPVLESPHSSH-NSDTPAVAAERITQTNLPSTVE-----QQNSSPKQAI- 166
V +P + QSP+ ESP S + +DTP V + T ++ ++ SP +
Sbjct: 234 VPIPQV---QSPLQESPASDYLPADTPQVFSPSSTSSSSSTSTSHTHPIHHTQSPPHILP 290
Query: 165 ------HHMQTRAKSGIHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHALK 4
H M TR+K+GI KPK +FL + EP V AL DPKW +AM E AL+
Sbjct: 291 AAPPIGHPMITRSKAGIFKPK--SFLAALLAIPSEPTSVSAALSDPKWFKAMQEEFQALQ 348
Query: 3 S 1
+
Sbjct: 349 N 349
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 245 bits (626), Expect(2) = 2e-65
Identities = 143/342 (41%), Positives = 193/342 (56%), Gaps = 10/342 (2%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F F+T VE QF+ +IK +Q+DWG E++ + LA GIV R CPHT +QNG +ERKHR
Sbjct: 628 FVNFKTQVELQFDLKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHR 687
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
+VE GLTLL AS+PLKFW +SF T V+L NRLP+ L HK +LF PDY K
Sbjct: 688 TIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKV 747
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFPF 460
FGC+C+P LRPYN HK+ + + C FLGYS KHKGY+ + NGR++I+ V F+E SFP+
Sbjct: 748 FGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPY 807
Query: 459 SLNF-----VTSPVSPHTDHISSQLLPDF*ISTLI-----DISNKVDHTEACSSLVIVPH 310
S + S VSP T H+S P T++ IS+ +E + + PH
Sbjct: 808 SKTIQVSSCLLSTVSPSTSHLSPSASPPVLSPTMLPTPTSPISSARPISEMDNIVSTHPH 867
Query: 309 IFPNQSPVLESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIH 130
PN + +P + S+ A + + + ++V + + H M TRAKSGI
Sbjct: 868 A-PNSADTTLTP-AQVVSNPVATPVQHVVSSIADASVTRTIAKDADNTHPMITRAKSGIV 925
Query: 129 KPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHALK 4
KPK F EP V AL +W +AM AE AL+
Sbjct: 926 KPKIFIAAIR------EPSSVSAALQQDEWKKAMVAEYDALQ 961
Score = 32.7 bits (73), Expect(2) = 2e-65
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSD 1011
YY+HF++ + F+WIF L+ KS+
Sbjct: 601 YYIHFVDAFSRFSWIFLLRNKSE 623
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 239 bits (609), Expect(2) = 1e-64
Identities = 142/345 (41%), Positives = 192/345 (55%), Gaps = 14/345 (4%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F QF+ ++ QF+ IK +QSDWG E++ +L LGI R CPHT QNG ERKHR
Sbjct: 603 FTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHR 662
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLD-HKSHYHMLFNKKPDYKHFK 643
H+VEMGLTLL+ A++PLKFW SF +V+LINRLPS + +S YH L +PDY K
Sbjct: 663 HIVEMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIK 722
Query: 642 FFGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFP 463
FGC C+P LRPYN HK+ + +S CV+LG S +HKG++ L GRI+I++ V F E FP
Sbjct: 723 VFGCLCFPHLRPYNNHKLQYRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFP 782
Query: 462 FSLNFVTSPVSPHTDHI--SSQLLPDF*IST-LIDISNKVDHTEACSSLVIVP-HIFPNQ 295
+ F +S + H H + L P +T L ++ T+ + +P + P+
Sbjct: 783 YLSLFASSSSNSHMSHTYPAQILFPSVNTNTNLHPETSSAPDTDPPDPVSPLPGSVSPSS 842
Query: 294 S---------PVLESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAK 142
S ++ P S+ + P A+ + S QN S A H M TRAK
Sbjct: 843 STPLTISQINSLISQPISTTSPSVPTPPADPVPAIRPAS----QNISHHNA-HPMITRAK 897
Query: 141 SGIHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
+G KPK F +LEP VK AL DP W++AM AE AL
Sbjct: 898 TGNLKPKVFV-------AALEPKSVKSALNDPAWLQAMQAEYKAL 935
Score = 36.6 bits (83), Expect(2) = 1e-64
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSD 1011
YY+ F++ +T FTWI+ LKAKSD
Sbjct: 576 YYITFVDTYTKFTWIYFLKAKSD 598
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 238 bits (608), Expect(2) = 2e-64
Identities = 143/332 (43%), Positives = 184/332 (55%), Gaps = 1/332 (0%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F F++ VE Q +IK VQSDWG EY+ L S GI+ R CP+TH QNG +ERKHR
Sbjct: 611 FLHFKSQVELQLGHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHR 670
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE G+ LLA AS+P K+W ++F TSV+LINRLP+P L +KS +LF++KP Y K
Sbjct: 671 HIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKV 730
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFPF 460
FGC CYP LRP+N HK+ F + C FLGYS HKGY+ L PNG I I++ V FDE +FPF
Sbjct: 731 FGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAFPF 790
Query: 459 S-LNFVTSPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSPVL 283
+ L S + +S LP T + + T +S P IFP
Sbjct: 791 AQLQSQKQXTSSFSSSXTS--LP---CQTSLPLMVLPSSTSCSTSSPTNPSIFP------ 839
Query: 282 ESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIHKPKKFAFLT 103
S+HN VA++ +S+P HHM TR+K GI KPK + T
Sbjct: 840 --ATSNHN-----VASQ-----------XPPSSAPPFPSHHMITRSKXGIFKPKAYLIST 881
Query: 102 SSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
+ P V EAL W +AMT E AL
Sbjct: 882 T-------PTSVPEALQLSHWKQAMTDEYLAL 906
Score = 36.2 bits (82), Expect(2) = 2e-64
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSD 1011
YY+HFI+ ++ FTWI+ LK KS+
Sbjct: 584 YYIHFIDAYSRFTWIYMLKHKSE 606
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 238 bits (607), Expect(2) = 2e-64
Identities = 142/345 (41%), Positives = 191/345 (55%), Gaps = 14/345 (4%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F QF+ ++ QF+ IK +QSDWG E++ +L LGI R CPHT QNG ERKHR
Sbjct: 603 FTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHR 662
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLD-HKSHYHMLFNKKPDYKHFK 643
H+VEMGLTLL+ A +PLKFW SF +V+LINRLPS + +S YH L +PDY K
Sbjct: 663 HIVEMGLTLLSHADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIK 722
Query: 642 FFGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFP 463
FGC C+P LRPYN HK+ + +S CV+LG S +HKG++ L GRI+I++ V F E FP
Sbjct: 723 VFGCLCFPHLRPYNNHKLQYKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFP 782
Query: 462 FSLNFVTSPVSPHTDHI--SSQLLPDF*IST-LIDISNKVDHTEACSSLVIVP-HIFPNQ 295
+ F +S + H H + L P +T L ++ T+ + +P + P+
Sbjct: 783 YLSLFASSSSNSHMSHTYPAQILFPSVNTNTNLHPETSSAPDTDPPDPVSPLPGSVSPSS 842
Query: 294 S---------PVLESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAK 142
S ++ P S+ + P A+ + S QN S A H M TRAK
Sbjct: 843 STPLTISQINSLISQPISTTSPSVPTPPADPVPAIRPAS----QNISHHNA-HPMITRAK 897
Query: 141 SGIHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
+G KPK F +LEP VK AL DP W++AM AE AL
Sbjct: 898 TGNLKPKVFV-------AALEPKSVKSALNDPAWLQAMQAEYKAL 935
Score = 36.6 bits (83), Expect(2) = 2e-64
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSD 1011
YY+ F++ +T FTWI+ LKAKSD
Sbjct: 576 YYITFVDTYTKFTWIYFLKAKSD 598
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 244 bits (623), Expect(2) = 3e-64
Identities = 146/352 (41%), Positives = 192/352 (54%), Gaps = 21/352 (5%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F F+ E QF ++K Q+DWG E++ L+ GI+ R CPHT +QNG ERKHR
Sbjct: 423 FLMFKAQAELQFGCKLKTFQTDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHR 482
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GLTLLA AS+PLK+W D+F+T+VFLINRLP+ L K Y LFN KP+Y K
Sbjct: 483 HIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKV 542
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFPF 460
FGC C+P LRPYN+HK+ F +S C FLGYS+KHKGY+ L GR+FI++SV FDE FPF
Sbjct: 543 FGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVVFDETRFPF 602
Query: 459 -----------SLNFVTSPVSPHTDHISS-QLLPDF*ISTLIDISNKVDHTEACSSLVIV 316
S + V P P ++ + P + T S+ S + +
Sbjct: 603 ADRLQKPVQIVSHSTVGLPCIPLVKNLEPJSVSPSLSLPTSSAQSSHQLDENLGSDIRSI 662
Query: 315 PHIFPNQS-----PVL-ESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSP---KQAIH 163
F N P+L ES +S+ A+ TN E N+ P Q H
Sbjct: 663 QXDFSNTDSSSTVPILXESASIXSSSNLYALPGTIPLSTNSDEPNESINTRPVTXPQQPH 722
Query: 162 HMQTRAKSGIHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
HM TR+K+GI KP + + EP +EA+ PKW EAM E AL
Sbjct: 723 HMVTRSKNGIFKPXVYTVDLNVE----EPNTFQEAISHPKWKEAMDEEFRAL 770
Score = 30.0 bits (66), Expect(2) = 3e-64
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKS 1014
YYV F + ++ +TW++ LK KS
Sbjct: 396 YYVSFXDAYSRYTWVYXLKTKS 417
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 234 bits (598), Expect(2) = 1e-62
Identities = 158/388 (40%), Positives = 202/388 (52%), Gaps = 56/388 (14%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F +FQ VER F R+I QSDWG EY+KL ++GI + CPHTH+QNG +ERKHR
Sbjct: 562 FCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHR 621
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GL LLA +SMPLK+W +F +V+LINR PS + H + H L PDY +
Sbjct: 622 HIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRI 681
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQ-PNGRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN+HK+ F ++RCVFLGYSN HKG++ L GRI+I++ V FDE+ FP
Sbjct: 682 FGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFP 741
Query: 462 F-SLN-----FVTSPV--SPH--------TDHI-----SSQLLPDF*ISTLIDIS----- 361
F SLN TS V PH TDH SS LP L S
Sbjct: 742 FASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPTS 801
Query: 360 ------------NKVDHTEACSSLVIVPHIFPNQSPVL----ESPHSSHNSDTPAVAAER 229
N+V A +VP P + V +P + S P VA E
Sbjct: 802 NNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATES 861
Query: 228 IT---------QTNLPSTVEQQNSSPKQAIHHMQTRAKSGIHKPKKFAFLT----SSNHK 88
+T Q S Q S + +TR + GI KPK+F T ++ +
Sbjct: 862 VTGVPDADPLLQAPGSSVAHQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAAR 921
Query: 87 SLEPPCVKEALLDPKWVEAMTAELHALK 4
EP V EAL DP+W AM AE AL+
Sbjct: 922 ITEPSSVSEALADPQWRAAMEAEFQALQ 949
Score = 34.7 bits (78), Expect(2) = 1e-62
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++++ FTWI+ L+ KSD+
Sbjct: 535 YYVSFIDDYSKFTWIYLLRHKSDV 558
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 243 bits (621), Expect = 1e-61
Identities = 146/364 (40%), Positives = 192/364 (52%), Gaps = 33/364 (9%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F F+ E QF ++ Q DWG E++ L+ GI+ R CPHT +QNG ERKHR
Sbjct: 669 FLMFKAQAELQFGCKLXTFQXDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHR 728
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GLTLLA AS+PLK+W D+F+T VFLINRLP+ L K Y LFN KP+Y K
Sbjct: 729 HIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKV 788
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFPF 460
FGC C+P LRPYN+HK+ F +S C FLGYS+KHKGY+ L GR+FI++SV FDE FPF
Sbjct: 789 FGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVXFDETKFPF 848
Query: 459 SLNFVTSPVS-----------------------------PHTDHISSQLLPDF*ISTLID 367
+ + PV P + SS L + S +
Sbjct: 849 -XDXLQKPVQXVSHSTVGLPCIXLVKNLXPJSXSXSLSLPTSSAQSSHQLDENLGSDIRS 907
Query: 366 ISNKVDHTEACSSLVIVPHIFPNQSPVLESPHSSHNSDTPAVAAERI-TQTNLPSTVEQQ 190
+ + +T++ S++ P+L S +S V I TN E
Sbjct: 908 VQQDLSNTDSSSTV-----------PILNXSASISSSSNLYVLPGTIPLSTNSDEPNESI 956
Query: 189 NSSP---KQAIHHMQTRAKSGIHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAE 19
N+ P Q HHM TR+K+GI KPK + F + EP +EA+ PKW EAM E
Sbjct: 957 NTRPVTLPQQPHHMVTRSKNGIFKPKVYTFDLNVE----EPNTFQEAISHPKWKEAMDEE 1012
Query: 18 LHAL 7
AL
Sbjct: 1013 FRAL 1016
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 238 bits (607), Expect(2) = 3e-61
Identities = 135/332 (40%), Positives = 185/332 (55%), Gaps = 1/332 (0%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F+ F+ VE QFE +IKC+Q D G E++ L GI+ R CP+ QNG+ ERKHR
Sbjct: 589 FKXFKLQVENQFEAKIKCLQXDNGGEFRSFMSFLQESGILHRFSCPYNSSQNGRVERKHR 648
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
HVVE GL LLA A +PLKFW +F T+ FLINR+PS L + S Y LF + PDYK +
Sbjct: 649 HVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLXNASPYFALFKRNPDYKFLRV 708
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQP-NGRIFIAQSVTFDEYSFP 463
FGC CYPF+RPYN HK+ + + +CVFLGYS HKGY L GR++++ V FDE FP
Sbjct: 709 FGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFP 768
Query: 462 FSLNFVTSPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSPVL 283
F+ N +SP +D ++P +S+ + + +S PN + L
Sbjct: 769 FAQNISSSPSKDASD---ESIIPXIIVSSNPSTLSFHGSNHSMAS--------PNLTSTL 817
Query: 282 ESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIHKPKKFAFLT 103
P S ++ T + E + + + +QQ P + TR+ SGI K K L
Sbjct: 818 THPTSPTDTPTTRXSREPVLEAEVXLPAQQQVVVPPPRV---TTRSMSGITKRKPIFNLA 874
Query: 102 SSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
+S K EP +K+A+ DP W EAM E+ AL
Sbjct: 875 AS--KISEPTTLKQAIKDPNWAEAMHTEIAAL 904
Score = 26.2 bits (56), Expect(2) = 3e-61
Identities = 6/21 (28%), Positives = 18/21 (85%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAK 1017
Y++ F+++++ +TW++ L++K
Sbjct: 562 YFILFVDDYSRYTWLYLLQSK 582
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 236 bits (603), Expect(2) = 9e-61
Identities = 134/332 (40%), Positives = 184/332 (55%), Gaps = 1/332 (0%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F+QF+ VE QF+ +IKC+QSD G E++ L GI+ R CP+ QNG+ ERKHR
Sbjct: 539 FKQFKLQVENQFDAKIKCLQSDNGGEFRSFMSFLQESGILHRFSCPYNSSQNGRVERKHR 598
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
HVVE GL LLA A +PLKFW +F T+ FLINR+PS L + S Y LF + PDYK +
Sbjct: 599 HVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLQNASPYFALFKRNPDYKFLRV 658
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQP-NGRIFIAQSVTFDEYSFP 463
FGC CYPF+RPYN HK+ + + +CVFLGYS HKGY L GR++++ V FDE FP
Sbjct: 659 FGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFP 718
Query: 462 FSLNFVTSPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSPVL 283
F+ N +SP +D ++P +S+ + + +S PN + L
Sbjct: 719 FAQNISSSPSKDASD---ESVIPAIIVSSNPSTLSFHGSNHSMAS--------PNLTSAL 767
Query: 282 ESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIHKPKKFAFLT 103
P ++ T E + + + +QQ P + TR+ SGI K K L
Sbjct: 768 THPTPPTDTPTTRSLREXVLEAEVTLPAQQQVVVPPPRV---TTRSMSGITKRKHIFNLA 824
Query: 102 SSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
+ K EP +K+A+ DP W EAM E+ AL
Sbjct: 825 A--FKISEPTTLKQAIKDPNWAEAMQTEIAAL 854
Score = 26.2 bits (56), Expect(2) = 9e-61
Identities = 6/21 (28%), Positives = 18/21 (85%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAK 1017
Y++ F+++++ +TW++ L++K
Sbjct: 512 YFILFVDDYSRYTWLYLLQSK 532
>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
Length = 1211
Score = 229 bits (584), Expect(2) = 2e-60
Identities = 135/337 (40%), Positives = 181/337 (53%), Gaps = 5/337 (1%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F F+T VE QF+ +IK +Q++WG E++ + LA GIV R CP T +QNG E KHR
Sbjct: 449 FVNFKTQVELQFDSKIKSLQTNWGGEFRAFQSYLAENGIVHRVSCPXTQQQNGVVEXKHR 508
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
+VE GLTLL S+PLKFW +SF V+L NRLP+ L HK +LF P+Y K
Sbjct: 509 TIVEHGLTLLHTTSLPLKFWDESFRIVVYLSNRLPTVVLHHKCPIEVLFKSIPBYSFLKV 568
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFPF 460
FGC+C+P LRPYN HK+ + + C FLGYS KHKGY + NGR++I++ V F+E SFP+
Sbjct: 569 FGCSCFPNLRPYNTHKLQYXSEECTFLGYSLKHKGYXCMSSNGRVYISRDVIFNETSFPY 628
Query: 459 SLNF-----VTSPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQ 295
S + S VSP T H+S P T++ T SS + +
Sbjct: 629 SKTIQASSCLPSTVSPFTSHLSPSASPPILSPTMLPTP-----TSPISSARXISEM---D 680
Query: 294 SPVLESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIHKPKKF 115
+ V PH+ ++ DT A +T+ + V+ H M TR KSGI KPK F
Sbjct: 681 NVVSTHPHAPNSXDTTPAPAHNVTR-RIAKDVDN--------THPMITRTKSGIFKPKFF 731
Query: 114 AFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHALK 4
EP V AL +W +AM E AL+
Sbjct: 732 IVAVR------EPSSVATALQQDEWKKAMVVEYDALQ 762
Score = 32.3 bits (72), Expect(2) = 2e-60
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSD 1011
YY+HF++ + F+WIF L+ KS+
Sbjct: 422 YYIHFVDVFSRFSWIFLLRNKSE 444
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 220 bits (561), Expect(2) = 5e-58
Identities = 145/399 (36%), Positives = 200/399 (50%), Gaps = 68/399 (17%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F++FQ VER F+R+I +Q+DWG EY+KL A +GI CPHTH+QNG +ERKHR
Sbjct: 562 FKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGSAERKHR 621
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H++E+GL+LL+ ASMPLKFW ++F + +LINR+PS + + + LFN+KPDY +
Sbjct: 622 HIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLRV 681
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQ-PNGRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN HK+ F + +CVFLG+S HKG++ L +GR++I++ V FDE FP
Sbjct: 682 FGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENIFP 741
Query: 462 FS---------------------LNFVTSPVSPHTDHISSQLLPDF*ISTLIDISNKVD- 349
FS N+ T+ S H+ + + S I IS+ D
Sbjct: 742 FSTLHSNAGARLRSEILLLPSSLTNYETT--STGGTHVVAPVANTPIPSDNIIISDATDA 799
Query: 348 -----------------HTEACSSLVIVPHIFPNQSPVLESPHSSH--------NSDTPA 244
H E S V+ H + S + S +S + A
Sbjct: 800 VSGENGTAHEREVENVLHEEVPSGTVLESHPHADSSTATDQEAGSSDAASGTGGDSVSGA 859
Query: 243 VAAERITQTNLPSTVE-------------QQNSSPKQAIHHMQTRAKSGIHKPK------ 121
A+ +Q PS E ++P H TR +SGI K K
Sbjct: 860 EASGAESQPVQPSPPETTATGDDATTATGDATAAPAPRPH---TRLRSGIRKEKVYTDGT 916
Query: 120 -KFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
K+ TS+ EP KEAL D W AM AE AL
Sbjct: 917 VKYGCFTSTG----EPQNDKEALGDKNWKAAMEAEYDAL 951
Score = 33.1 bits (74), Expect(2) = 5e-58
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++ + FTWI+ LK KS++
Sbjct: 535 YYVSFIDDFSKFTWIYLLKYKSEV 558
>ref|XP_012453597.1| PREDICTED: uncharacterized protein LOC105775649 [Gossypium raimondii]
Length = 619
Score = 226 bits (575), Expect(2) = 7e-58
Identities = 135/355 (38%), Positives = 190/355 (53%), Gaps = 24/355 (6%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F QFQ ++ QF + IK QSDWG +Y+ +LAS GI+ R CPHT QNG +E KHR
Sbjct: 275 FIQFQKLIQNQFGKTIKQFQSDWGGKYRAFASVLASQGIIHRISCPHTSEQNGVAEHKHR 334
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VEM LTLLA A + ++FW +F +V LINRLP+P LD K+ Y L +P Y H +
Sbjct: 335 HIVEMRLTLLALAGLSMEFWAYAFTCAVHLINRLPTPVLDCKTPYRALHGTEPTYDHLRI 394
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPNGRIFIAQSVTFDEYSFPF 460
FGC CYP+LRP+ RHK+ F + C FLGYS+ HKGY+ L P+GRI I++ V F+E FP
Sbjct: 395 FGCYCYPYLRPFQRHKLEFRSQPCTFLGYSSCHKGYQCLLPDGRIIISRHVEFNESRFP- 453
Query: 459 SLNFVTSPVSPHTDHISS--QLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSPV 286
+ +S T +S+ P F +L ++ + C S V I Q+ V
Sbjct: 454 ----SPTSLSRSTREVSTIPTCFPVFKTKSLCQRNSVT--SPICPSTVHGSSI--PQNGV 505
Query: 285 LESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSS----------------------PKQ 172
SP +++ S+TP + I Q + S+ +SS P
Sbjct: 506 DNSPENTNGSNTPYLTRSSIPQNGVDSSQNNFSSSGDQSPTHVVPVPSVPTGPEVSVPDM 565
Query: 171 AIHHMQTRAKSGIHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
+H M TR+K+GI KPK A + +EP ++EA +W ++ AL
Sbjct: 566 NVHSMTTRSKAGIFKPKVLAI------EVVEPSTIEEAFTSLEWQTTAQSKYDAL 614
Score = 27.3 bits (59), Expect(2) = 7e-58
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKS 1014
YYV FI+ FTW++ ++ KS
Sbjct: 248 YYVSFIDMSFRFTWVYLIRQKS 269
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 218 bits (555), Expect(2) = 7e-57
Identities = 139/387 (35%), Positives = 197/387 (50%), Gaps = 56/387 (14%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
FQ+FQ VER F R+I +Q+DWG EY+KL +GI CPHTH+QNG +ERKHR
Sbjct: 391 FQEFQCLVERMFNRKIISMQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHR 450
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GL+LLA AS+PLKFW +++ + V+LINR+P+ L + S LF + PDY+ +
Sbjct: 451 HIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRT 510
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPN-GRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN HK+ F + RC FLGYS HKG+R L + GRI+I++ V FDE FP
Sbjct: 511 FGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFP 570
Query: 462 FS--------------------------------LNF----------VTSPVSPHTDHIS 409
F+ +N+ +PV ++++
Sbjct: 571 FAELNPNAGTNLRKEVNLLPADMLNPGDVQLNDHVNYYPTAPANMVAAENPVENTEENLA 630
Query: 408 SQL--LPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSPVLESPHSSHNSDTPAVAA 235
S D S ISN +A + P++ N S ES S+ S +
Sbjct: 631 STRDDAADSGGSDTGTISNADPADDAAGDMTANPNL--NDSSTHESSISASASPASQSSV 688
Query: 234 ERITQTNLPSTVEQQ----NSSPKQAIHHMQTRAKSGIHKPK-------KFAFLTSSNHK 88
+ LP+ + Q +S+P+ T + GI K K K+ LT++
Sbjct: 689 ATAPEATLPNPQQHQQALRSSTPEGEASRPVTHLQKGIRKEKIYTDRTVKYGCLTTTG-- 746
Query: 87 SLEPPCVKEALLDPKWVEAMTAELHAL 7
EP + +AL D W AM A+ AL
Sbjct: 747 --EPRDLHDALHDTNWKHAMDAKFTAL 771
Score = 31.6 bits (70), Expect(2) = 7e-57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI+ + FTWI+ LK KS++
Sbjct: 364 YYVSFIDAFSRFTWIYFLKYKSEV 387
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 215 bits (547), Expect(2) = 9e-57
Identities = 136/394 (34%), Positives = 198/394 (50%), Gaps = 63/394 (15%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F +FQ+ VER F R+I +Q+DWG EY+KL +GI CPHTH+QNG +ERKHR
Sbjct: 560 FHEFQSLVERLFNRKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHR 619
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GL LLA +SMPLKFW ++F ++V+LINR PS L S L KPDY +
Sbjct: 620 HIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRV 679
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQPN-GRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN+HK+ F ++ C FLGYS HKG++ L P+ GR++I++ V FDE FP
Sbjct: 680 FGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFP 739
Query: 462 FS---------------------------LNFVTSPV-SPHTDHISSQLLPDF*ISTLID 367
F+ L ++S + +P ++S++ + + D
Sbjct: 740 FTKLHPNVGAKLRAEIALVPELAASLPRGLQQISSVINTPENANVSNENMQQ---DSTYD 796
Query: 366 ISNKVDHTEACSSLVIVPHIFPNQSPVLE---SPHSSHNSDTPAVAAERITQTNLPSTVE 196
+ + A ++ + SP + SP +S T + A+ + P
Sbjct: 797 NEPETETDGAPDTVSANAPAESSGSPPINEPASPFGESDSATASPASAPVNSAPHPDAAA 856
Query: 195 QQNSSPK------------------------QAIHHMQTRAKSGIHKPK-------KFAF 109
+S+P+ Q +TR +SGI K K K+
Sbjct: 857 SGSSAPRGSTSQGGTPSVAIDDPHPATTVTGQEAQRPRTRLQSGIRKEKVYTDGTVKWGM 916
Query: 108 LTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
LTS+ EP +++AL + W AM AE AL
Sbjct: 917 LTSTG----EPENLQDALQNNNWKCAMDAEYMAL 946
Score = 34.3 bits (77), Expect(2) = 9e-57
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++++ FTWI+ LK KS++
Sbjct: 533 YYVSFIDDYSKFTWIYLLKYKSEV 556
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 217 bits (553), Expect(2) = 9e-57
Identities = 99/182 (54%), Positives = 135/182 (74%), Gaps = 1/182 (0%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F++FQ+ VERQF R+I +Q+DWG EY+KL +GI + CPHTH+QNG ERKHR
Sbjct: 550 FKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFFKQIGIAHQVSCPHTHQQNGAVERKHR 609
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GL+LLA ASMPLKFW ++F + +LINRLP +D + LF+++PDYK +
Sbjct: 610 HIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYKSLRT 669
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQ-PNGRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN HK+ F + +CVFLG+SN HKG++ L+ G+++I++ VTFDE FP
Sbjct: 670 FGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKCLEVATGQVYISRDVTFDEQEFP 729
Query: 462 FS 457
FS
Sbjct: 730 FS 731
Score = 32.0 bits (71), Expect(2) = 9e-57
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++++ F WI+ LK KS++
Sbjct: 523 YYVSFIDDYSKFVWIYFLKFKSEV 546
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 217 bits (553), Expect(2) = 9e-57
Identities = 99/182 (54%), Positives = 135/182 (74%), Gaps = 1/182 (0%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F++FQ+ VERQF R+I +Q+DWG EY+KL +GI + CPHTH+QNG ERKHR
Sbjct: 439 FKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFFKQIGIAHQVSCPHTHQQNGAVERKHR 498
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GL+LLA ASMPLKFW ++F + +LINRLP +D + LF+++PDYK +
Sbjct: 499 HIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYKSLRT 558
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQ-PNGRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN HK+ F + +CVFLG+SN HKG++ L+ G+++I++ VTFDE FP
Sbjct: 559 FGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKCLEVATGQVYISRDVTFDEQEFP 618
Query: 462 FS 457
FS
Sbjct: 619 FS 620
Score = 32.0 bits (71), Expect(2) = 9e-57
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++++ F WI+ LK KS++
Sbjct: 412 YYVSFIDDYSKFVWIYFLKFKSEV 435
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 219 bits (557), Expect(2) = 1e-56
Identities = 118/293 (40%), Positives = 167/293 (56%), Gaps = 3/293 (1%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
FQ+FQ VERQF+R+I +Q+DWG EY+ L + +GIV CPHTH+QNG +ERKHR
Sbjct: 556 FQEFQVMVERQFDRKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHR 615
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VE+GL+LL+ ASMPLKFW ++F + +LINR+PS + + S LF +KPDY +
Sbjct: 616 HIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRI 675
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQ-PNGRIFIAQSVTFDEYSFP 463
FGCAC+P LRPYN HK+ F + RCVFLG+S HKG++ L+ GRI+I++ V FDE FP
Sbjct: 676 FGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFP 735
Query: 462 FSLNFVT--SPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSP 289
F+ + + D ++ +LL + + N E C V P + + S
Sbjct: 736 FTELHANAGARLRSEIDILTPELL-----GPIRSVGN-----EQCMHPVNNP-LSADVSA 784
Query: 288 VLESPHSSHNSDTPAVAAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIH 130
L + + + D A+ P P + +HH SG H
Sbjct: 785 ALSNRANEPHRDGAVHPADAEDPPATPPLDASSGPEPDRVVHHSPAATSSGRH 837
Score = 30.0 bits (66), Expect(2) = 1e-56
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++ + FTWI+ ++ KS +
Sbjct: 529 YYVSFIDDFSKFTWIYLIQHKSQV 552
>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1429
Score = 223 bits (567), Expect(2) = 1e-56
Identities = 131/345 (37%), Positives = 188/345 (54%), Gaps = 12/345 (3%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F+QF+ E Q +IK +QSDWG E++ L+ LGI+ R CPHTH QNG ERKHR
Sbjct: 618 FKQFKALAELQLNTKIKAIQSDWGGEFRSFTSYLSQLGIIHRIICPHTHHQNGVVERKHR 677
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H+VEMGL+LL+ +S+P +W +F T+V++INRLP+ + +H +LFN PDY +
Sbjct: 678 HIVEMGLSLLSHSSLPYHYWDHAFHTAVYIINRLPASH-NHCIPLKVLFNNVPDYNFLRA 736
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYL-QPNGRIFIAQSVTFDEYSFP 463
FGCACYP L PYN K + + C+FLGYS +GY+ L +GRI+I++ V F+E FP
Sbjct: 737 FGCACYPLLTPYNNPKFQYRSKECIFLGYST--RGYKCLDNKSGRIYISKDVLFNEKHFP 794
Query: 462 FSLNFVTSPVSPHTDHISSQLLPDF*ISTLIDISNKVDHTEACSSLVIVPHIFPNQSPVL 283
+ +T P + + + P + + I + HT ++ PN P
Sbjct: 795 YQ---ITPPTTCSPNQTVTSAAP---LGVVNHIPQQTPHTP--------NNLTPNNQPTP 840
Query: 282 ESPHS--SHNSDTPAVAAERITQTNLPSTVEQ---------QNSSPKQAIHHMQTRAKSG 136
+P + SH S +P ++A LPST + SP HHM TR+K+G
Sbjct: 841 HTPTTFPSHTS-SPYISASASPTPTLPSTASSTIDPNSTPTSSPSPTTNTHHMLTRSKTG 899
Query: 135 IHKPKKFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHALKS 1
KP F + N + EP V++AL W EAM E AL++
Sbjct: 900 HLKPPLFPTI---NLTTTEPTTVQQALSSIHWTEAMQQEYQALQA 941
Score = 26.2 bits (56), Expect(2) = 1e-56
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDLPAISNNSKPL 978
YY+ FI+ + + W++ L KS+ I K L
Sbjct: 591 YYISFIDAFSKYIWVYFLHDKSETLTIFKQFKAL 624
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 215 bits (548), Expect(2) = 2e-56
Identities = 139/403 (34%), Positives = 199/403 (49%), Gaps = 72/403 (17%)
Frame = -2
Query: 999 FQQFQTFVERQFERRIKCVQSDWGEEYKKLEPILASLGIVCRHPCPHTHRQNGKSERKHR 820
F++FQ VER F+R+I +Q+DWG EY+KL A +GI CPHTH+QNG +ERKH+
Sbjct: 565 FKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHK 624
Query: 819 HVVEMGLTLLA*ASMPLKFWWDSFATSVFLINRLPSPNLDHKSHYHMLFNKKPDYKHFKF 640
H++E+GL+LL+ ASMPLKFW ++F + +LINR+PS + + + LFN+KPDY +
Sbjct: 625 HIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRV 684
Query: 639 FGCACYPFLRPYNRHKVGFHTSRCVFLGYSNKHKGYRYLQ-PNGRIFIAQSVTFDEYSFP 463
F C C+P L PYN HK+ F + +CVFLG+S HKG+++L +GR++I++ V FDE FP
Sbjct: 685 FSCTCWPHLHPYNTHKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFP 744
Query: 462 FS-------------LNFVTSP------VSPHTDHI-----SSQLLPDF*ISTLIDISNK 355
FS + + SP VS HI ++ L D IS D+++
Sbjct: 745 FSTLHSNAGARLRSEILLLPSPLTNYNTVSAGGTHIVAPVANTPLPSDNLISNAADVTSG 804
Query: 354 VD-----------------------HTEACSSLVI---------VPHIFPNQSPVLESPH 271
+ H +A S V+ P N S +
Sbjct: 805 ENSAAHEQEMENEQEIENVMHGNDVHGDAASGPVLDQPTADSSTAPDQGANTSDAVSGAA 864
Query: 270 SSHNSDTPAV--------AAERITQTNLPSTVEQQNSSPKQAIHHMQTRAKSGIHKPK-- 121
S DT + AA +P V ++ TR +SGI K K
Sbjct: 865 SDAGGDTATLGAGAANGAAAGGEESQPVPPDVTGTVAATVAPASRPHTRLRSGIRKEKVY 924
Query: 120 -----KFAFLTSSNHKSLEPPCVKEALLDPKWVEAMTAELHAL 7
K+ +S+ EP KEAL D W +AM E +AL
Sbjct: 925 TNGTVKYGCFSSTG----EPQNDKEALGDKNWRDAMETEYNAL 963
Score = 33.1 bits (74), Expect(2) = 2e-56
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 1079 YYVHFIEEHTGFTWIFPLKAKSDL 1008
YYV FI++ + FTWI+ LK KS++
Sbjct: 538 YYVSFIDDFSKFTWIYLLKYKSEV 561