BLASTX nr result
ID: Forsythia23_contig00028330
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00028330
(710 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Me... 94 6e-17
ref|XP_012083790.1| PREDICTED: sm-like protein LSM4 [Jatropha cu... 94 1e-16
ref|XP_010088503.1| hypothetical protein L484_001116 [Morus nota... 92 2e-16
ref|XP_012082737.1| PREDICTED: sm-like protein LSM4 [Jatropha cu... 92 2e-16
gb|KJB49937.1| hypothetical protein B456_008G146200 [Gossypium r... 92 2e-16
gb|KJB49936.1| hypothetical protein B456_008G146200 [Gossypium r... 92 2e-16
gb|KJB49935.1| hypothetical protein B456_008G146200 [Gossypium r... 92 2e-16
gb|KJB49934.1| hypothetical protein B456_008G146200 [Gossypium r... 92 2e-16
gb|KJB22526.1| hypothetical protein B456_004G052500 [Gossypium r... 92 2e-16
ref|XP_012473489.1| PREDICTED: sm-like protein LSM4 [Gossypium r... 92 2e-16
ref|XP_011087432.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
ref|XP_011079681.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
ref|XP_011008047.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
ref|XP_010910837.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
ref|XP_011033554.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
ref|XP_011033553.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
ref|XP_010938405.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
gb|KHN46573.1| Putative U6 snRNA-associated Sm-like protein LSm4... 92 2e-16
gb|KHN20408.1| Putative U6 snRNA-associated Sm-like protein LSm4... 92 2e-16
ref|XP_010684532.1| PREDICTED: probable U6 snRNA-associated Sm-l... 92 2e-16
>ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 94.4 bits (233), Expect = 6e-17
Identities = 48/66 (72%), Positives = 49/66 (74%), Gaps = 12/66 (18%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE-- 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVC 76
Query: 557 ---DWL 549
DWL
Sbjct: 77 NGVDWL 82
>ref|XP_012083790.1| PREDICTED: sm-like protein LSM4 [Jatropha curcas]
Length = 100
Score = 93.6 bits (231), Expect = 1e-16
Identities = 48/74 (64%), Positives = 51/74 (68%), Gaps = 7/74 (9%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDEDW 552
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 551 LE*RGKELPNWCIF 510
N+C+F
Sbjct: 75 --------VNYCVF 80
>ref|XP_010088503.1| hypothetical protein L484_001116 [Morus notabilis]
gi|587845880|gb|EXB36416.1| hypothetical protein
L484_001116 [Morus notabilis]
Length = 165
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 32 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 89
>ref|XP_012082737.1| PREDICTED: sm-like protein LSM4 [Jatropha curcas]
Length = 148
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>gb|KJB49937.1| hypothetical protein B456_008G146200 [Gossypium raimondii]
Length = 101
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>gb|KJB49936.1| hypothetical protein B456_008G146200 [Gossypium raimondii]
gi|763782868|gb|KJB49939.1| hypothetical protein
B456_008G146200 [Gossypium raimondii]
Length = 90
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>gb|KJB49935.1| hypothetical protein B456_008G146200 [Gossypium raimondii]
Length = 121
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>gb|KJB49934.1| hypothetical protein B456_008G146200 [Gossypium raimondii]
Length = 172
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>gb|KJB22526.1| hypothetical protein B456_004G052500 [Gossypium raimondii]
Length = 135
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_012473489.1| PREDICTED: sm-like protein LSM4 [Gossypium raimondii]
gi|823147160|ref|XP_012473490.1| PREDICTED: sm-like
protein LSM4 [Gossypium raimondii]
gi|823147162|ref|XP_012473491.1| PREDICTED: sm-like
protein LSM4 [Gossypium raimondii]
gi|823147164|ref|XP_012473492.1| PREDICTED: sm-like
protein LSM4 [Gossypium raimondii]
gi|763755191|gb|KJB22522.1| hypothetical protein
B456_004G052500 [Gossypium raimondii]
gi|763755192|gb|KJB22523.1| hypothetical protein
B456_004G052500 [Gossypium raimondii]
gi|763755193|gb|KJB22524.1| hypothetical protein
B456_004G052500 [Gossypium raimondii]
gi|763755194|gb|KJB22525.1| hypothetical protein
B456_004G052500 [Gossypium raimondii]
gi|763755196|gb|KJB22527.1| hypothetical protein
B456_004G052500 [Gossypium raimondii]
Length = 149
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_011087432.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
[Sesamum indicum]
Length = 147
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_011079681.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
[Sesamum indicum] gi|747066030|ref|XP_011079682.1|
PREDICTED: probable U6 snRNA-associated Sm-like protein
LSm4 [Sesamum indicum]
Length = 144
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_011008047.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
[Populus euphratica]
Length = 150
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_010910837.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
[Elaeis guineensis]
Length = 147
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_011033554.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
isoform X2 [Populus euphratica]
Length = 151
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_011033553.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
isoform X1 [Populus euphratica]
Length = 151
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>ref|XP_010938405.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4
[Elaeis guineensis] gi|743844689|ref|XP_010938406.1|
PREDICTED: probable U6 snRNA-associated Sm-like protein
LSm4 [Elaeis guineensis]
Length = 146
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
>gb|KHN46573.1| Putative U6 snRNA-associated Sm-like protein LSm4 [Glycine soja]
Length = 135
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 3 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 60
>gb|KHN20408.1| Putative U6 snRNA-associated Sm-like protein LSm4 [Glycine soja]
Length = 405
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 274 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 331
>ref|XP_010684532.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Beta
vulgaris subsp. vulgaris] gi|870854195|gb|KMT06000.1|
hypothetical protein BVRB_7g164860 [Beta vulgaris subsp.
vulgaris]
Length = 145
Score = 92.4 bits (228), Expect = 2e-16
Identities = 45/58 (77%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Frame = -1
Query: 710 VEKKNGETYNGHLVNCETWMNIHLLEVICTSKDGDRFRIMPEC-------*YLRVPDE 558
VE KNGETYNGHLVNC+TWMNIHL EVICTSKDGDRF MPEC YLRVPDE
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74