BLASTX nr result

ID: Forsythia23_contig00026688 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00026688
         (701 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_588284.1| hypothetical protein ZeamMp020 [Zea mays subsp....    70   5e-19
ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncat...   101   5e-19
gb|AFW86835.1| hypothetical protein ZEAMMB73_214691 [Zea mays]         73   2e-10
gb|KJB09778.1| hypothetical protein B456_001G164600 [Gossypium r...    49   1e-06

>ref|YP_588284.1| hypothetical protein ZeamMp020 [Zea mays subsp. mays]
           gi|94502700|ref|YP_588308.1| hypothetical protein
           ZeamMp046 [Zea mays subsp. mays]
           gi|40795138|gb|AAR91182.1| hypothetical protein
           (mitochondrion) [Zea mays] gi|40795139|gb|AAR91183.1|
           hypothetical protein (mitochondrion) [Zea mays]
          Length = 99

 Score = 69.7 bits (169), Expect(2) = 5e-19
 Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 7/72 (9%)
 Frame = -3

Query: 261 IKHGNKKK-KCLFDYFDRGGWRKWTKQTRISHR------TNTGKESY*KLS*PTFVEPCI 103
           IKHGNKK  KCLF +F RGGW KW KQT I         ++  ++++ + +   FV PCI
Sbjct: 4   IKHGNKKHLKCLFYHFYRGGWIKWAKQTHIFQSKRWVPFSSRQRKNHLENAPNPFVGPCI 63

Query: 102 VSDPNLPGASLP 67
           VSDPNLPGAS P
Sbjct: 64  VSDPNLPGASPP 75



 Score = 52.4 bits (124), Expect(2) = 5e-19
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -2

Query: 79  SEPPIEASEVGEPYDGQLSPAVRRGL 2
           + PP+EASEVGEPYDGQLSPAVRRGL
Sbjct: 72  ASPPLEASEVGEPYDGQLSPAVRRGL 97


>ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncatula]
          Length = 1094

 Score =  101 bits (251), Expect = 5e-19
 Identities = 50/66 (75%), Positives = 53/66 (80%)
 Frame = -3

Query: 573  YPKHWSNPVAGKGPRSAYYYTTLHLALHIYKANPCPVPGRAKGASILTLYPHLRPG*RAL 394
            YPK+WS PVAGKGPRSA YYTTLH ALHIY+ANPCPVPGR KGASIL  Y  L     AL
Sbjct: 883  YPKNWSGPVAGKGPRSANYYTTLHSALHIYRANPCPVPGRVKGASILIPY-SLAQANGAL 941

Query: 393  LIQGGD 376
            LIQGG+
Sbjct: 942  LIQGGE 947


>gb|AFW86835.1| hypothetical protein ZEAMMB73_214691 [Zea mays]
          Length = 77

 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 42/75 (56%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
 Frame = -2

Query: 205 MEKVDKTDSHFSSNKY-------RKRIILKTFLTHLRRAVYCK*SEPARSEPPIEASEVG 47
           M+KV KTDSHFS  K        +KRIILKT L                + PP+EASEVG
Sbjct: 1   MDKVGKTDSHFSIEKMGSFFVSTKKRIILKTLLNPFVGPCIVSDPNLPGASPPLEASEVG 60

Query: 46  EPYDGQLSPAVRRGL 2
           EPYDGQLSPAVRRGL
Sbjct: 61  EPYDGQLSPAVRRGL 75


>gb|KJB09778.1| hypothetical protein B456_001G164600 [Gossypium raimondii]
          Length = 494

 Score = 48.5 bits (114), Expect(2) = 1e-06
 Identities = 27/42 (64%), Positives = 28/42 (66%)
 Frame = -3

Query: 126 PTFVEPCIVSDPNLPGASLP*RQVKLVSRMMGNYLLRFGEDS 1
           P+FVE CI             RQVKLVSRMMGNYLLRFGEDS
Sbjct: 408 PSFVELCI-------------RQVKLVSRMMGNYLLRFGEDS 436



 Score = 31.6 bits (70), Expect(2) = 1e-06
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -1

Query: 170 IEQIQEKNHIENFPNP 123
           IEQI +KNHIEN PNP
Sbjct: 391 IEQIWKKNHIENVPNP 406


Top