BLASTX nr result
ID: Forsythia23_contig00019917
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00019917
(505 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 132 1e-38
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 127 4e-36
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 127 4e-36
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 130 2e-35
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 124 2e-33
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 121 5e-33
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 121 5e-33
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 120 1e-32
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 119 2e-32
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 119 2e-32
ref|XP_010097937.1| Retrovirus-related Pol polyprotein from tran... 113 5e-32
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 119 1e-31
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 119 1e-31
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 127 2e-31
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 117 2e-31
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 117 2e-31
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 124 4e-31
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 114 7e-31
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 119 1e-30
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 120 2e-30
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 132 bits (331), Expect(2) = 1e-38
Identities = 60/106 (56%), Positives = 79/106 (74%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEF ++DF+ LC + GI RH+TV YTPQQNG+AERMN T+L++V CM+ SS L KV W E
Sbjct: 522 LEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAE 581
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
A T ++INR+PSSAL KTP+++ +GK D+ HL+ FG AY H
Sbjct: 582 AAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVH 627
Score = 54.3 bits (129), Expect(2) = 1e-38
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMT 485
+ Y LE A KCIFL YP GVKGY+LW + K I SRDVTFN +M+
Sbjct: 623 TAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDMS 678
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 127 bits (318), Expect(2) = 4e-36
Identities = 57/108 (52%), Positives = 77/108 (71%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFCN DF C + GI+RH+TV +TPQQNG+AERMN TL+ + CM + + L K W E
Sbjct: 876 LEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAE 935
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQS 324
AV T +Y++NR+PS+A+D KTP++ SGK ++S L+ FG AY H S
Sbjct: 936 AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVS 983
Score = 51.2 bits (121), Expect(2) = 4e-36
Identities = 27/45 (60%), Positives = 28/45 (62%)
Frame = +3
Query: 348 LEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
LE A KCIFL Y GVKGYRLW K I SRDVTF+ S M
Sbjct: 987 LEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM 1031
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 127 bits (318), Expect(2) = 4e-36
Identities = 57/108 (52%), Positives = 77/108 (71%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFCN DF C + GI+RH+TV +TPQQNG+AERMN TL+ + CM + + L K W E
Sbjct: 663 LEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAE 722
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQS 324
AV T +Y++NR+PS+A+D KTP++ SGK ++S L+ FG AY H S
Sbjct: 723 AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVS 770
Score = 51.2 bits (121), Expect(2) = 4e-36
Identities = 27/45 (60%), Positives = 28/45 (62%)
Frame = +3
Query: 348 LEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
LE A KCIFL Y GVKGYRLW K I SRDVTF+ S M
Sbjct: 774 LEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM 818
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 130 bits (326), Expect(2) = 2e-35
Identities = 59/106 (55%), Positives = 77/106 (72%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFC+ F C + GI RHKTV +TPQQNG+AERMN TL+DK CM+++S LP+ W E
Sbjct: 554 LEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAE 613
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T SY++NR+PSSA+ KTPE+ +GK ++ +LR FG AY H
Sbjct: 614 AVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLH 659
Score = 45.8 bits (107), Expect(2) = 2e-35
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 348 LEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN 470
LEA A K +F+ YPDGVKGY++W K + K I SRDV F+
Sbjct: 665 LEARALKGVFVGYPDGVKGYKIWCK--DQGKCIVSRDVVFH 703
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 124 bits (311), Expect(2) = 2e-33
Identities = 57/106 (53%), Positives = 78/106 (73%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEF ++DF+ C + GI H+TV YTPQQNG+AERMN T+L++V CM+ S L KV W E
Sbjct: 556 LEFLSNDFNSFCQKEGIATHRTVRYTPQQNGLAERMNRTILERVRCMLSSLGLSKVFWVE 615
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T ++I+R+PSSAL KTP+++ +GK+ D+ HL+ FG AY H
Sbjct: 616 AVETVVHLISRSPSSALQFKTPQEKWTGKVVDYQHLKVFGCTAYVH 661
Score = 45.1 bits (105), Expect(2) = 2e-33
Identities = 23/47 (48%), Positives = 26/47 (55%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRD 458
+ Y LE A KCIFL YP GVKGY+LW K K I S+D
Sbjct: 657 TAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIKTQGKEKCIISKD 703
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 121 bits (303), Expect(2) = 5e-33
Identities = 55/106 (51%), Positives = 72/106 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+RH TVP+TPQQNG+AERMN T++ K C++ ++ LPK W E
Sbjct: 771 MEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 830
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+PS A+D KTP + SG ++S LR FG AY H
Sbjct: 831 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAH 876
Score = 46.6 bits (109), Expect(2) = 5e-33
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
+ Y LE A KCIFL YP GVKGY+LW K++ SR+V F+ S M
Sbjct: 872 TAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP--ETKKVVISRNVVFHESVM 924
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 121 bits (303), Expect(2) = 5e-33
Identities = 55/106 (51%), Positives = 72/106 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+RH TVP+TPQQNG+AERMN T++ K C++ ++ LPK W E
Sbjct: 564 MEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 623
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+PS A+D KTP + SG ++S LR FG AY H
Sbjct: 624 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAH 669
Score = 46.6 bits (109), Expect(2) = 5e-33
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
+ Y LE A KCIFL YP GVKGY+LW K++ SR+V F+ S M
Sbjct: 665 TAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP--ETKKVVISRNVVFHESVM 717
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 120 bits (301), Expect(2) = 1e-32
Identities = 55/106 (51%), Positives = 72/106 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
++FC+ F C GI+RH TVP+TPQQNG+AERMN T++ K CM+ ++ LPK W E
Sbjct: 525 MDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 584
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+PS A+D KTP + SG ++S LR FG AY H
Sbjct: 585 AVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAH 630
Score = 46.2 bits (108), Expect(2) = 1e-32
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +3
Query: 348 LEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
LE A KCIFL YP GVKGY+LW K++ SR+V F+ S M
Sbjct: 636 LEPRAIKCIFLGYPSGVKGYKLWCP--ETKKVVISRNVVFHESVM 678
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 119 bits (299), Expect(2) = 2e-32
Identities = 55/106 (51%), Positives = 70/106 (66%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+ H TVP+TPQQNG+AERMNM ++ K CM+ ++ LPK W E
Sbjct: 599 MEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAE 658
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+PS A D KTP + SG ++S LR FG AY H
Sbjct: 659 AVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAH 704
Score = 46.2 bits (108), Expect(2) = 2e-32
Identities = 27/61 (44%), Positives = 33/61 (54%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMTCLID 497
+ Y LE A KCIFL YP GVKGY+LW K++ SR+V F+ E L D
Sbjct: 700 TAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP--ETKKVVISRNVVFH--ESVILHD 755
Query: 498 K 500
K
Sbjct: 756 K 756
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 119 bits (299), Expect(2) = 2e-32
Identities = 55/106 (51%), Positives = 70/106 (66%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+ H TVP+TPQQNG+AERMNM ++ K CM+ ++ LPK W E
Sbjct: 599 MEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAE 658
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+PS A D KTP + SG ++S LR FG AY H
Sbjct: 659 AVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAH 704
Score = 46.2 bits (108), Expect(2) = 2e-32
Identities = 27/61 (44%), Positives = 33/61 (54%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMTCLID 497
+ Y LE A KCIFL YP GVKGY+LW K++ SR+V F+ E L D
Sbjct: 700 TAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP--ETKKVVISRNVVFH--ESVILHD 755
Query: 498 K 500
K
Sbjct: 756 K 756
>ref|XP_010097937.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis] gi|587884397|gb|EXB73293.1|
Retrovirus-related Pol polyprotein from transposon TNT
1-94 [Morus notabilis]
Length = 1822
Score = 113 bits (283), Expect(2) = 5e-32
Identities = 53/107 (49%), Positives = 73/107 (68%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEF F+ + ++RHKTV TPQQNG+AERMN TLL++V CM++ +SLPK WGE
Sbjct: 19 LEFLGDGFNQFLKDECVVRHKTVRKTPQQNGLAERMNRTLLERVRCMLIEASLPKRFWGE 78
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQ 321
V T +Y++NR P +A+D KTPE+ + +F +L+ FG AY HQ
Sbjct: 79 VVNTAAYLVNRCPLAAIDFKTPEEVWTDYPLNFENLKVFGCTAYAHQ 125
Score = 50.8 bits (120), Expect(2) = 5e-32
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SE 479
+ Y L+ A+KC+F+ YP+GVKGY+LW K N K SRDV F +E
Sbjct: 120 TAYAHQKEGKLDPRAKKCMFVGYPEGVKGYKLWCKYGNTSKSFISRDVVFRETE 173
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 119 bits (299), Expect(2) = 1e-31
Identities = 54/106 (50%), Positives = 71/106 (66%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+RH TVP+TPQQNG+AERMN T++ K CM+ ++ LPK W E
Sbjct: 549 MEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 608
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+P A+D KTP + SG ++S L+ FG AY H
Sbjct: 609 AVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAH 654
Score = 43.5 bits (101), Expect(2) = 1e-31
Identities = 24/55 (43%), Positives = 29/55 (52%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
+ Y LE KCIFL YP GVKGY+LW K++ SR V F+ S M
Sbjct: 650 TAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCP--ETKKVVISRYVVFHESVM 702
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 119 bits (299), Expect(2) = 1e-31
Identities = 54/106 (50%), Positives = 71/106 (66%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+RH TVP+TPQQNG+AERMN T++ K CM+ ++ LPK W E
Sbjct: 381 MEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 440
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+P A+D KTP + SG ++S L+ FG AY H
Sbjct: 441 AVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAH 486
Score = 43.5 bits (101), Expect(2) = 1e-31
Identities = 24/55 (43%), Positives = 29/55 (52%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
+ Y LE KCIFL YP GVKGY+LW K++ SR V F+ S M
Sbjct: 482 TAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCP--ETKKVVISRYVVFHESVM 534
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103833265 [Brassica rapa]
Length = 3353
Score = 127 bits (320), Expect(2) = 2e-31
Identities = 60/108 (55%), Positives = 73/108 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFCN+ F LC SGI RH+T YTPQQNG++ERMN T++DKV M+ + L + W E
Sbjct: 483 LEFCNNRFDELCRTSGIKRHRTCNYTPQQNGVSERMNRTIMDKVRSMLAETGLGQEFWAE 542
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQS 324
A T Y+INRTP+S +D K PE+ SG PD SHLR FG AY H S
Sbjct: 543 ATSTAVYLINRTPNSTIDFKLPEEVWSGNRPDLSHLRRFGCTAYVHVS 590
Score = 127 bits (320), Expect(2) = 2e-31
Identities = 60/108 (55%), Positives = 73/108 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFCN+ F LC SGI RH+T YTPQQNG++ERMN T++DKV M+ + L + W E
Sbjct: 2558 LEFCNNRFDELCRTSGIKRHRTCNYTPQQNGVSERMNRTIMDKVRSMLAETGLGQEFWAE 2617
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQS 324
A T Y+INRTP+S +D K PE+ SG PD SHLR FG AY H S
Sbjct: 2618 ATSTAVYLINRTPNSTIDFKLPEEVWSGNRPDLSHLRRFGCTAYVHVS 2665
Score = 34.7 bits (78), Expect(2) = 2e-31
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3
Query: 360 AQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
A K +F+ YP GVKGYR+W K TSR+V F E+
Sbjct: 598 AIKGVFVGYPFGVKGYRVWIP--EDLKCTTSRNVVFREDEL 636
Score = 34.7 bits (78), Expect(2) = 2e-31
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3
Query: 360 AQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
A K +F+ YP GVKGYR+W K TSR+V F E+
Sbjct: 2673 AIKGVFVGYPFGVKGYRVWIP--EDLKCTTSRNVVFREDEL 2711
Score = 63.2 bits (152), Expect(2) = 3e-12
Identities = 29/51 (56%), Positives = 33/51 (64%)
Frame = +1
Query: 172 WGEAVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQS 324
W EA T Y+INRTP+S +D K PE+ SG PD SHLR FG AY H S
Sbjct: 1239 WAEATSTAVYLINRTPNSTIDFKLPEEVWSGNRPDLSHLRRFGCTAYVHVS 1289
Score = 34.7 bits (78), Expect(2) = 3e-12
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3
Query: 360 AQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
A K +F+ YP GVKGYR+W K TSR+V F E+
Sbjct: 1297 AIKGVFVGYPFGVKGYRVWIP--EDLKCTTSRNVVFREDEL 1335
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 117 bits (292), Expect(2) = 2e-31
Identities = 54/106 (50%), Positives = 69/106 (65%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+RH TVP+TPQQNG+AERMN T++ K CM+ ++ LPK W E
Sbjct: 385 MEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 444
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR+PS A+D KTP + S +S LR F AY H
Sbjct: 445 AVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDLRVFSCTAYAH 490
Score = 45.4 bits (106), Expect(2) = 2e-31
Identities = 24/55 (43%), Positives = 31/55 (56%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEM 482
+ Y LE A KCIFL YP GVKGY+LW K++ +R+V F+ S M
Sbjct: 486 TAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP--ETKKVVINRNVVFHESVM 538
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris
subsp. vulgaris]
Length = 1947
Score = 117 bits (292), Expect(2) = 2e-31
Identities = 53/106 (50%), Positives = 74/106 (69%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEF N +F+ LC ++GI+RH+TV TPQQNG+AERMN TLL++V CM+ ++ L + W E
Sbjct: 631 LEFVNDEFNELCRDAGIVRHRTVRKTPQQNGVAERMNQTLLERVRCMLSNAGLTRKYWSE 690
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
AV T Y+INR P + +D K P + SG+ ++S LR FG Y+H
Sbjct: 691 AVKTACYLINRGPHTGIDCKVPYEVWSGRSAEYSGLRVFGCMVYYH 736
Score = 45.1 bits (105), Expect(2) = 2e-31
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = +3
Query: 321 VYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMTCLIDK 500
VY LE A+K FL Y DGVKGYR+W+ ++I SRDVTF+ E T +
Sbjct: 733 VYYHVNEGKLEPRAKKGCFLGYGDGVKGYRIWSPSEG--RVILSRDVTFD--ENTMFVSA 788
Query: 501 N 503
N
Sbjct: 789 N 789
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 124 bits (310), Expect(2) = 4e-31
Identities = 55/107 (51%), Positives = 72/107 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFCN F C ++GI RH+T YTPQQNG+AERMN TL++KV C++ S L + W E
Sbjct: 546 LEFCNLKFDEYCKKNGIERHRTCTYTPQQNGVAERMNRTLMEKVRCLLNESGLDESFWAE 605
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQ 321
A T +Y++NR+P+S +D PE+ GK P + HLR FG AY HQ
Sbjct: 606 AASTTAYLVNRSPASVVDHNVPEELWLGKKPGYKHLRRFGSIAYVHQ 652
Score = 37.4 bits (85), Expect(2) = 4e-31
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 315 SSVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN 470
S Y L+ A K +FL YP GVKGY++W ++ K + SR+V F+
Sbjct: 646 SIAYVHQDQGKLKPRALKGVFLGYPQGVKGYKVWL--LDEEKCVISRNVVFD 695
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 114 bits (286), Expect(2) = 7e-31
Identities = 51/106 (48%), Positives = 69/106 (65%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
+EFC+ F C GI+RH TV +TPQQNG+ ERMN T++ K CM+ ++ LP+ W E
Sbjct: 503 MEFCSRQFKSYCRSEGIVRHYTVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAE 562
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
A T Y+INR+PS A+D KTP + SG ++S L+ FG AY H
Sbjct: 563 AASTACYLINRSPSYAIDKKTPIEMWSGSPANYSDLKVFGCTAYAH 608
Score = 45.8 bits (107), Expect(2) = 7e-31
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMTCLID 497
+ Y LE A KCIFL YP GVK Y+LW K++ SR+V FN E L D
Sbjct: 604 TAYAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWCP--ETQKVVISRNVIFN--ETVMLND 659
Query: 498 KN 503
K+
Sbjct: 660 KS 661
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 119 bits (298), Expect(2) = 1e-30
Identities = 51/106 (48%), Positives = 73/106 (68%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFCN +F C + G++RH+T YTPQQNG+AERMN T+++KV CM+ S L K W E
Sbjct: 557 LEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAE 616
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFH 318
A T ++IN++PSS+++ PE++ +G PD+ L+ FG AY H
Sbjct: 617 AASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIH 662
Score = 40.4 bits (93), Expect(2) = 1e-30
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 315 SSVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMTCLI 494
S Y L A+K IFL YPDGVK +++W + K + SRD+ F ++M +
Sbjct: 657 SVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWL--LEDRKCVVSRDIVFQENQMYKEL 714
Query: 495 DKN 503
KN
Sbjct: 715 QKN 717
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 120 bits (301), Expect(2) = 2e-30
Identities = 55/108 (50%), Positives = 73/108 (67%)
Frame = +1
Query: 1 LEFCNSDFSHLCDESGILRHKTVPYTPQQNGIAERMNMTLLDKVWCMMVSSSLPKVLWGE 180
LEFC S+F C + GI RH+TV TPQQNG+AERMN TLL++ CM+ ++ L + W E
Sbjct: 542 LEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAE 601
Query: 181 AVMTPSYIINRTPSSALDDKTPEQQLSGKLPDFSHLRTFGYAAYFHQS 324
AV T Y+INR P + + KTP + SGK D+S+L+ FG AY+H S
Sbjct: 602 AVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVS 649
Score = 38.9 bits (89), Expect(2) = 2e-30
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 318 SVYXXXXXXXLEAMAQKCIFL*YPDGVKGYRLWAKGINVFKIITSRDVTFN*SEMTCLID 497
+ Y LE A+K +F+ Y DGVKG+R+W+ ++I SR+V F+ S + I
Sbjct: 643 TAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVFDESPLLRTIV 700
Query: 498 K 500
K
Sbjct: 701 K 701