BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00019661
         (1118 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011081724.1| PREDICTED: RNA polymerase sigma factor sigC ...   243   2e-61
ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC ...   211   1e-51
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...   177   1e-41
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   174   8e-41
emb|CDP08205.1| unnamed protein product [Coffea canephora]            171   1e-39
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Erythra...   161   9e-37
ref|XP_009757459.1| PREDICTED: RNA polymerase sigma factor sigC ...   135   1e-34
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   149   3e-33
ref|XP_009623296.1| PREDICTED: RNA polymerase sigma factor sigC ...   145   4e-32
ref|XP_009367413.1| PREDICTED: RNA polymerase sigma factor sigC-...   144   9e-32
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   144   9e-32
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC ...   144   9e-32
ref|XP_008365120.1| PREDICTED: RNA polymerase sigma factor sigC-...   143   3e-31
gb|AKC88689.1| sigma factor [Hypseocharis bilobata]                   142   3e-31
ref|XP_012077339.1| PREDICTED: RNA polymerase sigma factor sigC ...   140   2e-30
ref|XP_009361496.1| PREDICTED: RNA polymerase sigma factor sigC-...   140   2e-30
ref|XP_009361495.1| PREDICTED: RNA polymerase sigma factor sigC-...   140   2e-30
ref|XP_009757464.1| PREDICTED: RNA polymerase sigma factor sigC ...   140   2e-30
ref|XP_009370150.1| PREDICTED: RNA polymerase sigma factor sigC-...   140   2e-30
ref|XP_009370149.1| PREDICTED: RNA polymerase sigma factor sigC-...   140   2e-30

>ref|XP_011081724.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Sesamum
           indicum]
          Length = 556

 Score =  243 bits (619), Expect = 2e-61
 Identities = 143/274 (52%), Positives = 182/274 (66%), Gaps = 1/274 (0%)
 Frame = -3

Query: 819 MGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIASAIYGETETLID 640
           MGFRL+ KW                      CRG+    I L RL  +S +YGETETL D
Sbjct: 1   MGFRLNLKWSGLSVQSPFSTSTSSLPYTYP-CRGRDTSYI-LARLSASSVLYGETETLND 58

Query: 639 PLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSCNGLYSLIDDNIQMSAEKDKPAFLTSLQ 460
                 CSSSPQ+LE+ Y G +E K+   K S +GL SL++ +I+ S  +DK A+LTSLQ
Sbjct: 59  ASRVHVCSSSPQLLENYYLGTRETKVAVGKGSSDGLSSLLEKHIETSNSEDKLAYLTSLQ 118

Query: 459 ATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSSILF 280
           AT+ SQF LLMKNLD LE MFSDS+V+RLERDIL+QL+RLGALRLF +CLSR+LKSS  F
Sbjct: 119 ATQLSQFRLLMKNLDMLEDMFSDSNVVRLERDILEQLERLGALRLFYSCLSRTLKSSTSF 178

Query: 279 DLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPSETI 100
           DLS+A T+LVEE ++N+ VD+H G+ VV+SG+KE R+LRRKR L+K +  +  ELP+ TI
Sbjct: 179 DLSNATTELVEEPKVNDSVDNHVGE-VVRSGRKELRKLRRKRMLDKESGITTQELPTVTI 237

Query: 99  SGD-XXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
           S                 + +IA+NEAEMSSGVK
Sbjct: 238 SKQHKYASARRASRSRNKRQRIARNEAEMSSGVK 271


>ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC [Erythranthe guttatus]
          Length = 562

 Score =  211 bits (536), Expect = 1e-51
 Identities = 135/280 (48%), Positives = 173/280 (61%), Gaps = 7/280 (2%)
 Frame = -3

Query: 819 MGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIASAIYGETETLID 640
           MGFRL+  W                     SCRG+   S +L R   AS IYG+TETL D
Sbjct: 1   MGFRLNLNW-CGLSVQSPLSTSTSSWPTSSSCRGRD-SSYFLARSSAASVIYGDTETLND 58

Query: 639 PLEP-RTCSSSPQILEDNYFGN-KEIKMEPRKRSCNGLYSLIDDNIQMSAEKDKPAFLTS 466
                    SS Q+LE+ Y G  K++K+   K S + LYSL+D +IQ+   +DK   LTS
Sbjct: 59  TSRGIHVYPSSHQLLENYYLGGAKQLKVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTS 118

Query: 465 LQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSSI 286
           +QAT+AS+  LLMKNLD LE MF+DS+ +RLE DIL+QL+RLGALRLF++CLSR++KS  
Sbjct: 119 VQATQASKLRLLMKNLDVLEDMFADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYT 178

Query: 285 LFDLSDAPTQLVEE-TRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPS 109
            FDLSD PT++VEE  R+N+ VD+H GKV V SGKKE R+LRRKR  +     +I E PS
Sbjct: 179 SFDLSDGPTEIVEECARVNDSVDNHLGKVFVHSGKKELRKLRRKRTSD-NESPTIQESPS 237

Query: 108 ETISGD----XXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
           +TIS D                  + K A+NEA+MSSGVK
Sbjct: 238 KTISKDLQQLKFAIAGRTPRSRNKRQKTARNEADMSSGVK 277


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  177 bits (449), Expect = 1e-41
 Identities = 117/280 (41%), Positives = 162/280 (57%), Gaps = 7/280 (2%)
 Frame = -3

Query: 819 MGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIY-LTRLPIASAIYGETETLI 643
           MGFRL+ KW                         +G+E+ +  TR    S    + E+L 
Sbjct: 3   MGFRLNLKWDFPISCPTLTNSPSRLCTSSV----QGKEASFDSTRFSFPSVTSEDCESLY 58

Query: 642 -DPLEPRTCSSSP-QILEDNYFGNKEIKMEPRKRSCNGLYSLIDDNIQMSAEKDKPAFLT 469
            DP +P  CSS   Q  E++Y   + +KM+  K S   L+ +++ + Q    +D  A + 
Sbjct: 59  KDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNAS-QAPIGEDISASVA 117

Query: 468 SLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSS 289
            LQA++ASQFSLL++NLD LE+MF+DS+++RLERDI+ QL RLGAL+LF  CLSR+LK+S
Sbjct: 118 GLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTS 177

Query: 288 ILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPS 109
             FDL  APT+ + E + N  VDDH  KVVV+SGKKE+R+ +R+RALEK ++     LPS
Sbjct: 178 TSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPS 237

Query: 108 ETI----SGDXXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
           +TI                     +L  AKNEAEMS GVK
Sbjct: 238 KTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVK 277


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  174 bits (442), Expect = 8e-41
 Identities = 110/246 (44%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
 Frame = -3

Query: 717 KGRESIY-LTRLPIASAIYGETETLI-DPLEPRTCSSSP-QILEDNYFGNKEIKMEPRKR 547
           +G+E+ +  TR    S    + E+L  DP +P  CSS   Q  E++Y   + +KM+  K 
Sbjct: 83  QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 546 SCNGLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLER 367
           S   L+ +++ + Q    +D  A +  LQA++ASQFSLL++NLD LE+MF+DS+++RLER
Sbjct: 143 SHGDLFKIVNAS-QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 366 DILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSG 187
           DI+ QL RLGAL+LF  CLSR+LK+S  FDL  APT+ + E + N  VDDH  KVVV+SG
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261

Query: 186 KKEQRRLRRKRALEKGNDSSILELPSETI----SGDXXXXXXXXXXXXXXKLKIAKNEAE 19
           KKE+R+ +R+RALEK ++     LPS+TI                     +L  AKNEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321

Query: 18  MSSGVK 1
           MS GVK
Sbjct: 322 MSKGVK 327


>emb|CDP08205.1| unnamed protein product [Coffea canephora]
          Length = 599

 Score =  171 bits (432), Expect = 1e-39
 Identities = 107/244 (43%), Positives = 147/244 (60%), Gaps = 5/244 (2%)
 Frame = -3

Query: 717 KGRESIYLT-RLPIASAIYGETET-LIDPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRS 544
           KG E++Y + ++   S  YG+T T L DP+  + CSS+ Q  E++    ++++    + S
Sbjct: 72  KGWEAVYESAKMSSFSVAYGDTTTWLSDPMRVKMCSSATQARENDNSETEDMEDAVSRWS 131

Query: 543 CNGLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERD 364
            +G  ++  ++I  S E +   +L SL+ T+A  F LLMKNLD LE+  +DS V+RLE D
Sbjct: 132 YHGSCNMAHNDISSSRENNNSIYLASLRNTKALHFGLLMKNLDVLEETIADSGVLRLEED 191

Query: 363 ILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGK 184
           IL QL+RLGAL LF TCL R LK S L+DLSD  T+ VE ++IN PV+D  GK VV S K
Sbjct: 192 ILVQLERLGALELFQTCLCRMLKPSTLYDLSDKATKPVEASQINCPVEDVVGKKVVHSVK 251

Query: 183 KEQRRLRRKRALEKGNDSSILELPSETISGD---XXXXXXXXXXXXXXKLKIAKNEAEMS 13
           KE+R+ RRKR L+KGN   + E  S T+                     LKIA+ EAEMS
Sbjct: 252 KEKRKSRRKRPLDKGNGKFMQEKYSSTLEDAQQVEFSPGRKSSDSRSRSLKIARTEAEMS 311

Query: 12  SGVK 1
            GVK
Sbjct: 312 QGVK 315


>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Erythranthe guttata]
          Length = 478

 Score =  161 bits (407), Expect = 9e-37
 Identities = 99/197 (50%), Positives = 128/197 (64%), Gaps = 4/197 (2%)
 Frame = -3

Query: 579 NKEIKMEPRKRSCNGLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKM 400
           +K I++   K S + LYSL+D +IQ+   +DK   LTS+QAT+AS+  LLMKNLD LE M
Sbjct: 9   SKYIQVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLDVLEDM 68

Query: 399 FSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVD 220
           F+DS+ +RLE DIL+QL+RLGALRLF++CLSR++KS   FDLSD PT++VEE        
Sbjct: 69  FADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSDGPTEIVEEC------- 121

Query: 219 DHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPSETISGD----XXXXXXXXXXXXX 52
               KV V SGKKE R+LRRKR  +     +I E PS+TIS D                 
Sbjct: 122 ----KVFVHSGKKELRKLRRKRTSD-NESPTIQESPSKTISKDLQQLKFAIAGRTPRSRN 176

Query: 51  XKLKIAKNEAEMSSGVK 1
            + K A+NEA+MSSGVK
Sbjct: 177 KRQKTARNEADMSSGVK 193


>ref|XP_009757459.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Nicotiana
           sylvestris]
          Length = 584

 Score =  135 bits (340), Expect(2) = 1e-34
 Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 6/245 (2%)
 Frame = -3

Query: 717 KGRESIYLTRLPIASAIYGETE-TLIDPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSC 541
           KG+E++Y     +   I G+ E +  DP   RTC S PQ+   +     EIK    + S 
Sbjct: 61  KGKEALYDPARSLKPFINGDCEPSHSDPFRVRTCLSDPQLWTSDISVTTEIKTRIGRGSP 120

Query: 540 NGLYSLI-DDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERD 364
           + +Y  I  D   +S + +KP++L++   T A  FSLLMKN+D LE MF+DS++ RLE D
Sbjct: 121 SNIYGDIGSDKTGISPDGEKPSYLST---TRAPHFSLLMKNIDLLENMFADSEMSRLEND 177

Query: 363 ILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGK 184
           IL QL++LGAL  F++ LSR+L S+   ++ D P +LVEE   ++ V +   KVVV+S K
Sbjct: 178 ILVQLEKLGALEFFHSRLSRTLHSTSP-EVLDVPRELVEEIEKDDLVGNGIDKVVVRSRK 236

Query: 183 KEQRRLRRKRALEKGNDSSILELPSETISGD----XXXXXXXXXXXXXXKLKIAKNEAEM 16
           K++R  RR RA    ND   +   ++ I  D                  + KIAKNEAEM
Sbjct: 237 KQERNSRRNRASGIANDIITVHPHTKNIQEDMQQPKFYSGKRTHASRNKRQKIAKNEAEM 296

Query: 15  SSGVK 1
           S GVK
Sbjct: 297 SRGVK 301



 Score = 40.0 bits (92), Expect(2) = 1e-34
 Identities = 25/45 (55%), Positives = 27/45 (60%)
 Frame = -1

Query: 863 NLPLFSSIGETVFWRWVLGWISNGGVSQSSPFFPQVHHHLGPLHI 729
           N   FS I +T FW WVLG  SN GVS S+P  P  H H G LHI
Sbjct: 5   NSKSFSCIHKT-FWLWVLGCTSN-GVSLSNPLSPPTHQH-GLLHI 46


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  149 bits (377), Expect = 3e-33
 Identities = 105/279 (37%), Positives = 147/279 (52%), Gaps = 6/279 (2%)
 Frame = -3

Query: 819 MGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIASAIYGETE-TLI 643
           MGFRL  KWG                        KGRE++Y     +   I G+ E +  
Sbjct: 1   MGFRLHLKWGFSVQPPFSSNSSSWPSSHSF----KGREALYDPARSLKPFITGDCEPSHS 56

Query: 642 DPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSCNGLYSLIDDN-IQMSAEKDKPAFLTS 466
           DP   +TC S PQ+   +     EIK    + S + +Y  I  + I +S + +KP +L +
Sbjct: 57  DPFRVQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNT 116

Query: 465 LQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSSI 286
              T++  FSLLMKNLD LE MF+DS++ RLERDIL QL++LGAL  F+TCLSR+  SS 
Sbjct: 117 ---TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSST 173

Query: 285 LFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPSE 106
              + D P +L++E   ++ V +   KVVV+S KK++R+ RR RA    ND   ++  ++
Sbjct: 174 FPKVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTK 233

Query: 105 TISGD----XXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
            I  D                  + KIAKNEAEMS GVK
Sbjct: 234 NIQEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVK 272


>ref|XP_009623296.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Nicotiana
           tomentosiformis]
          Length = 572

 Score =  145 bits (367), Expect = 4e-32
 Identities = 108/291 (37%), Positives = 147/291 (50%), Gaps = 7/291 (2%)
 Frame = -3

Query: 852 LFFHWRNSLLEMGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIAS 673
           +F     +LL MGFRL  KWG                        KG+E++Y     +  
Sbjct: 7   VFLLHSQNLLAMGFRLYLKWGFSVQPPFSSNSSSWPSSHSF----KGKEALYDPARSLKP 62

Query: 672 AIYGETE-TLIDPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSCNGLYSLIDD--NIQM 502
            I  + E +  DP   RTC S PQ+   +     EIK    + S   +Y  I    N+ +
Sbjct: 63  FINEDCEPSHSDPFRVRTCLSDPQLWTSDTSVTTEIKTRIGRGSPTNIYGDIGSPKNV-I 121

Query: 501 SAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLF 322
           S + +KP +L +   T A  FSLLMKNLD LE MF+DS+V RLERDI+ QL +LGAL  F
Sbjct: 122 SLDGEKPTYLNT---TRALHFSLLMKNLDLLENMFADSEVSRLERDIMVQLDKLGALEFF 178

Query: 321 NTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEK 142
           +TCLSR+   S   ++ D P +L+EE   +  V +   KVVV+S KK++R+ RR RA   
Sbjct: 179 HTCLSRTNHCSTFPEVLDVPRELIEEIEKDGLVGNGIDKVVVRSKKKQERKSRRNRASRN 238

Query: 141 GNDSSILELPSETISGD----XXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
            ND   ++  ++ I  D                  + KIAKNEAEMS GVK
Sbjct: 239 ANDIITVQPHTKNIQEDLQQPKFFSGKRTHTSRNKRQKIAKNEAEMSRGVK 289


>ref|XP_009367413.1| PREDICTED: RNA polymerase sigma factor sigC-like [Pyrus x
           bretschneideri]
          Length = 556

 Score =  144 bits (364), Expect = 9e-32
 Identities = 103/245 (42%), Positives = 140/245 (57%), Gaps = 6/245 (2%)
 Frame = -3

Query: 717 KGRE-SIYLTRLPIASAIYGETETL-IDPLEPRTCSS-SPQILEDNYFGNKEIKMEPRKR 547
           +GRE S    RL   S I  E E    D L+  +CSS SPQILED     ++I       
Sbjct: 36  RGREGSFNSARLLFLSIISEEGEISGKDTLKVYSCSSASPQILEDGVSEMEQISFRSSSS 95

Query: 546 SCNGLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLER 367
           +  G       N QM         + +L++  A+ F LL+KNLD LE+ F++SDV++LE+
Sbjct: 96  NTTG-------NNQMPVADGNFRPVNTLESCSAAHFILLLKNLDALEETFANSDVLKLEK 148

Query: 366 DILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSG 187
           +IL QL +LGAL+LF+ CLSR+L SS  FDLSD PT  +E  ++++ VD+  GK++V+SG
Sbjct: 149 EILLQLGKLGALQLFDACLSRTLTSSSFFDLSDIPTVQIEGHKMDKKVDNDRGKIIVRSG 208

Query: 186 KKEQRRLRRKRALEKGNDSSILELPSETISGD---XXXXXXXXXXXXXXKLKIAKNEAEM 16
           KK++RR  RKRAL+    SS    P  T  G                  +L IAKNEAEM
Sbjct: 209 KKKERR-SRKRALDNVRVSSDSLPPKSTWEGSKHPTASSAKRASKYRKSRLTIAKNEAEM 267

Query: 15  SSGVK 1
           S+GVK
Sbjct: 268 STGVK 272


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  144 bits (364), Expect = 9e-32
 Identities = 100/236 (42%), Positives = 136/236 (57%), Gaps = 5/236 (2%)
 Frame = -3

Query: 693  TRLPIASAIYGETETLIDPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSCNGLYSL-ID 517
            +RLP +  +     +L DPL+    S++PQ LE      +E+K+   K S    +SL + 
Sbjct: 335  SRLPSSGVL-----SLKDPLKAYASSAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMI 389

Query: 516  DNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLG 337
            D        DK +  TS QA +AS +SLLM+NLD LE+ F+DSDV+ LER+IL QL R G
Sbjct: 390  DKTHELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFG 449

Query: 336  ALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRK 157
            AL+LFNTCLSR+LK+S + DLSD P     +  +N  VD  +  +VV S KK+QR+  R+
Sbjct: 450  ALKLFNTCLSRTLKASNILDLSDVPAN-SGDCNMNLSVDGQKDNIVVCSRKKKQRKKIRE 508

Query: 156  RALEKGNDSSILELPSETISG----DXXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
            RALE     S   +PS T+ G                   +L+IA+NEAEMS GVK
Sbjct: 509  RALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVK 564


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC [Solanum lycopersicum]
          Length = 551

 Score =  144 bits (364), Expect = 9e-32
 Identities = 103/278 (37%), Positives = 142/278 (51%), Gaps = 5/278 (1%)
 Frame = -3

Query: 819 MGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIASAIYGETE-TLI 643
           MGFRL  KWG                        KGRE++Y     +   I G+ E +  
Sbjct: 1   MGFRLHLKWGFSLQPPFSSNSSSWPSSHSF----KGRETLYDPARSLKPFINGDCEPSHS 56

Query: 642 DPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSCNGLYSLIDDNIQMSAEKDKPAFLTSL 463
           DP   +TC S PQ+   +     E K    + S + +Y  I        + +KP +L + 
Sbjct: 57  DPFRVQTCLSDPQLWTSDASVTTETKTRNGRGSPSNVYGDIGS---YKIDGEKPTYLNT- 112

Query: 462 QATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSSIL 283
             T++  FSLLMKNLD LE MF+DS++ RLERDIL QL++LGAL  F+TCLSR+  SS  
Sbjct: 113 --TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSF 170

Query: 282 FDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPSET 103
             + D P +L++E   ++ V +   KVVV+S KK++R  RRKRA    ND   ++  ++ 
Sbjct: 171 PKVLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKN 230

Query: 102 ISGD----XXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
           I  D                  + KIAKNEAEMS GVK
Sbjct: 231 IQEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVK 268


>ref|XP_008365120.1| PREDICTED: RNA polymerase sigma factor sigC-like [Malus domestica]
          Length = 559

 Score =  143 bits (360), Expect = 3e-31
 Identities = 108/249 (43%), Positives = 141/249 (56%), Gaps = 10/249 (4%)
 Frame = -3

Query: 717 KGRE-SIYLTRLPIASAIYGETETL-IDPLEPRTCSS-SPQILEDNYFGNKEIKME--PR 553
           +GRE S    RL   S I  E ET   D L+  +CSS SPQILED +   +EI+    P+
Sbjct: 36  RGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPQILEDGFSNLEEIRFRRVPK 95

Query: 552 KRSCN--GLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVI 379
             S N  G   + D + + S           L+A  A+ FSLL+KNLD LE+ F++SDV+
Sbjct: 96  SSSSNTTGNNQMPDGDFRSSK---------GLEACSAAHFSLLLKNLDALEETFANSDVL 146

Query: 378 RLERDILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVV 199
           +LE +IL QL RLGAL+LFN  LSR+L SS   DLSD PT  +EE ++++ VD+  GK +
Sbjct: 147 KLENEILSQLGRLGALQLFNAYLSRTLTSSSFXDLSDIPTVPIEEYKMDKKVDNDRGKTI 206

Query: 198 VQSGKKEQRRLRRKRALEKGNDSSILELPSETISG---DXXXXXXXXXXXXXXKLKIAKN 28
           V SGKKE+RR  RKRA +    SS L  P  T  G                  +  I  N
Sbjct: 207 VWSGKKEERR-SRKRASDNARVSSELLSPKTTWEGFKPPTVSSAKRASXSRRRRXTIVLN 265

Query: 27  EAEMSSGVK 1
           EAE+S+GVK
Sbjct: 266 EAELSTGVK 274


>gb|AKC88689.1| sigma factor [Hypseocharis bilobata]
          Length = 566

 Score =  142 bits (359), Expect = 3e-31
 Identities = 100/242 (41%), Positives = 140/242 (57%), Gaps = 7/242 (2%)
 Frame = -3

Query: 705 SIYLTRLPIASAIYGETE-TLIDPLEPRTCS-SSPQILEDNYFGNKEIKMEPRKRSCNGL 532
           S   TRL   S I  E E +  DPL+    S ++PQ L +++    E  M+  KRS  GL
Sbjct: 42  SFNTTRLFFLSIISEEGEKSHKDPLKAYASSYAAPQTLGNDFLEMGE--MQSNKRSYGGL 99

Query: 531 YSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQ 352
           +S+I+D +    E    +  TSL+ +  + FSLLM+NLD LE+ F+D +V+RLERDIL Q
Sbjct: 100 HSIIEDTLMHVGEGISSSG-TSLRVSRPAHFSLLMENLDVLEETFADKNVLRLERDILLQ 158

Query: 351 LKRLGALRLFNTCL-SRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQ 175
           L RLGAL+LFN  L SR++++S +FDLSD PT+ +++ ++N    +   K +  SGKKE+
Sbjct: 159 LGRLGALKLFNIFLSSRTIETSNIFDLSDVPTEDIKDCKVNSTKHERITKKIFHSGKKEK 218

Query: 174 RRLRRKRALEKGNDSSILELPSETISG----DXXXXXXXXXXXXXXKLKIAKNEAEMSSG 7
           R+ RR R  E     S L LPS+TI                      L IA+NEAEM+ G
Sbjct: 219 RKSRRARVSENSKKISSLLLPSKTIQSGFQQPSISSAKRASNSRSRILMIARNEAEMARG 278

Query: 6   VK 1
           VK
Sbjct: 279 VK 280


>ref|XP_012077339.1| PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
          Length = 606

 Score =  140 bits (353), Expect = 2e-30
 Identities = 108/291 (37%), Positives = 158/291 (54%), Gaps = 8/291 (2%)
 Frame = -3

Query: 849 FFHWRNSLLEMGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIASA 670
           FF    + + +GFRL  K G                    + +G+   SI ++RL   S 
Sbjct: 35  FFSSLKTKMGLGFRLSLKLGFPFHSQFHVNSPSRLSSSPSAVKGR-EGSINISRLSFLSV 93

Query: 669 IYGETETLI-DPLEPRTCSSSP-QILEDNYFGNKEIKMEPRKRSCNGLYSLIDDNIQMSA 496
           I  E + L  D L+    SSS  Q LE+ +   +E K+   KRS +GL   IDD      
Sbjct: 94  ISEEGDNLHRDHLKTNAYSSSGMQTLENEHSQVEEAKISVGKRSLSGLNDTIDDAQVFIK 153

Query: 495 EKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNT 316
           E D     +S   T  S FSLL++NL+ LE+ F+DSDV++LERDIL QL +LGAL+LFNT
Sbjct: 154 EDDFVPPSSSKDRT--SNFSLLLENLNILEESFADSDVLKLERDILLQLGKLGALKLFNT 211

Query: 315 CLSRSL--KSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRA-LE 145
           CL+R+L  +++ + D SD PT+ ++E + +   + +  K++V +GKKE+R+ RR+RA L+
Sbjct: 212 CLTRTLEVQTANVLDFSDLPTENIQECKRDGTSNGNVYKIIVCTGKKEERKSRRERASLK 271

Query: 144 KGNDSSILELPSETIS---GDXXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
            G+      LP ++I    G               +L IA+NEAEMS GVK
Sbjct: 272 NGHKVPCFPLPLKSIQNGRGKATSFDKKTSNSKSRRLMIARNEAEMSRGVK 322


>ref|XP_009361496.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X2 [Pyrus
           x bretschneideri]
          Length = 469

 Score =  140 bits (353), Expect = 2e-30
 Identities = 107/249 (42%), Positives = 143/249 (57%), Gaps = 10/249 (4%)
 Frame = -3

Query: 717 KGRE-SIYLTRLPIASAIYGETETL-IDPLEPRTCSS-SPQILEDNYFGNKEIKME--PR 553
           +GRE S    RL   S I  E ET   D L+  +CSS SPQILED +   +EI+    P+
Sbjct: 36  RGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPQILEDGFSDLEEIRFRRVPK 95

Query: 552 KRSCNGLYSLIDDNIQMSAEKDKPAFLTS--LQATEASQFSLLMKNLDKLEKMFSDSDVI 379
             S N +      N QM        F++S  + A  A+ FSLL+KNLD LE+ F++SDV+
Sbjct: 96  SSSSNTI-----GNNQMPDGD----FISSKGIDACSAAHFSLLLKNLDALEETFANSDVL 146

Query: 378 RLERDILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVV 199
           +LE +IL QL RLGAL+LF+  LSR+L SS  F LSD PT  +EE ++++ VD++ GK +
Sbjct: 147 KLENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSDIPTVPIEEDKMDKKVDNYRGKTI 206

Query: 198 VQSGKKEQRRLRRKRALEKGNDSSILELPSETISG---DXXXXXXXXXXXXXXKLKIAKN 28
           V+SGKKE+RR  RKRA +    SS L  P  T  G                  +L I  N
Sbjct: 207 VRSGKKEERR-SRKRASDNARVSSELLPPKTTCEGFKPPTVSSAKRASNSRRRRLTIVLN 265

Query: 27  EAEMSSGVK 1
           E E+S+GVK
Sbjct: 266 EPELSTGVK 274


>ref|XP_009361495.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X1 [Pyrus
           x bretschneideri]
          Length = 558

 Score =  140 bits (353), Expect = 2e-30
 Identities = 107/249 (42%), Positives = 143/249 (57%), Gaps = 10/249 (4%)
 Frame = -3

Query: 717 KGRE-SIYLTRLPIASAIYGETETL-IDPLEPRTCSS-SPQILEDNYFGNKEIKME--PR 553
           +GRE S    RL   S I  E ET   D L+  +CSS SPQILED +   +EI+    P+
Sbjct: 36  RGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPQILEDGFSDLEEIRFRRVPK 95

Query: 552 KRSCNGLYSLIDDNIQMSAEKDKPAFLTS--LQATEASQFSLLMKNLDKLEKMFSDSDVI 379
             S N +      N QM        F++S  + A  A+ FSLL+KNLD LE+ F++SDV+
Sbjct: 96  SSSSNTI-----GNNQMPDGD----FISSKGIDACSAAHFSLLLKNLDALEETFANSDVL 146

Query: 378 RLERDILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVV 199
           +LE +IL QL RLGAL+LF+  LSR+L SS  F LSD PT  +EE ++++ VD++ GK +
Sbjct: 147 KLENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSDIPTVPIEEDKMDKKVDNYRGKTI 206

Query: 198 VQSGKKEQRRLRRKRALEKGNDSSILELPSETISG---DXXXXXXXXXXXXXXKLKIAKN 28
           V+SGKKE+RR  RKRA +    SS L  P  T  G                  +L I  N
Sbjct: 207 VRSGKKEERR-SRKRASDNARVSSELLPPKTTCEGFKPPTVSSAKRASNSRRRRLTIVLN 265

Query: 27  EAEMSSGVK 1
           E E+S+GVK
Sbjct: 266 EPELSTGVK 274


>ref|XP_009757464.1| PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana
           sylvestris]
          Length = 554

 Score =  140 bits (352), Expect = 2e-30
 Identities = 104/279 (37%), Positives = 145/279 (51%), Gaps = 6/279 (2%)
 Frame = -3

Query: 819 MGFRLDFKWGXXXXXXXXXXXXXXXXXXXXSCRGKGRESIYLTRLPIASAIYGETE-TLI 643
           MGFRL  KWG                        KG+E++Y     +   I G+ E +  
Sbjct: 1   MGFRLHLKWGFSVQPPFSSNSSAWPSSHSF----KGKEALYDPARSLKPFINGDCEPSHS 56

Query: 642 DPLEPRTCSSSPQILEDNYFGNKEIKMEPRKRSCNGLYSLI-DDNIQMSAEKDKPAFLTS 466
           DP   RTC S PQ+   +     EIK    + S + +Y  I  D   +S + +KP++L++
Sbjct: 57  DPFRVRTCLSDPQLWTSDISVTTEIKTRIGRGSPSNIYGDIGSDKTGISPDGEKPSYLST 116

Query: 465 LQATEASQFSLLMKNLDKLEKMFSDSDVIRLERDILQQLKRLGALRLFNTCLSRSLKSSI 286
              T A  FSLLMKN+D LE MF+DS++ RLE DIL QL++LGAL  F++ LSR+L S+ 
Sbjct: 117 ---TRAPHFSLLMKNIDLLENMFADSEMSRLENDILVQLEKLGALEFFHSRLSRTLHSTS 173

Query: 285 LFDLSDAPTQLVEETRINEPVDDHEGKVVVQSGKKEQRRLRRKRALEKGNDSSILELPSE 106
             ++ D P +LVEE   ++ V +   KVVV+S KK++R  RR RA    ND   +   ++
Sbjct: 174 P-EVLDVPRELVEEIEKDDLVGNGIDKVVVRSRKKQERNSRRNRASGIANDIITVHPHTK 232

Query: 105 TISGD----XXXXXXXXXXXXXXKLKIAKNEAEMSSGVK 1
            I  D                  + KIAKNEAEMS GVK
Sbjct: 233 NIQEDMQQPKFYSGKRTHASRNKRQKIAKNEAEMSRGVK 271


>ref|XP_009370150.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X2 [Pyrus
           x bretschneideri]
          Length = 469

 Score =  140 bits (352), Expect = 2e-30
 Identities = 106/247 (42%), Positives = 141/247 (57%), Gaps = 8/247 (3%)
 Frame = -3

Query: 717 KGRE-SIYLTRLPIASAIYGETETL-IDPLEPRTCSS-SPQILEDNYFGNKEIKME--PR 553
           +GRE S    RL   S I  E ET   D L+  +CSS SP ILED +   +EI+    P+
Sbjct: 36  RGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPLILEDGFSDLEEIRFRRVPK 95

Query: 552 KRSCNGLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRL 373
             S N +      N QM     + +    L+A  A+ FSLL+KNLD LE+ F++SDV++L
Sbjct: 96  SSSSNTI-----GNNQMPDSDFRSS--KGLEACSAAHFSLLLKNLDALEETFANSDVLKL 148

Query: 372 ERDILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQ 193
           E +IL QL RLGAL+LF+  LSR+L SS  F LSD PT  +EE ++++ VD+  GK +V+
Sbjct: 149 ENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSDIPTVPIEEDKMDKKVDNDRGKTIVR 208

Query: 192 SGKKEQRRLRRKRALEKGNDSSILELPSETISG---DXXXXXXXXXXXXXXKLKIAKNEA 22
           SGKKE+RR  RKRA +    SS L  P  T  G                  +L I  NEA
Sbjct: 209 SGKKEERR-SRKRASDNARVSSELLPPKTTWEGFKPPTVSSAKRASNSRRRRLTIVLNEA 267

Query: 21  EMSSGVK 1
           E+S+GVK
Sbjct: 268 ELSTGVK 274


>ref|XP_009370149.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X1 [Pyrus
           x bretschneideri]
          Length = 558

 Score =  140 bits (352), Expect = 2e-30
 Identities = 106/247 (42%), Positives = 141/247 (57%), Gaps = 8/247 (3%)
 Frame = -3

Query: 717 KGRE-SIYLTRLPIASAIYGETETL-IDPLEPRTCSS-SPQILEDNYFGNKEIKME--PR 553
           +GRE S    RL   S I  E ET   D L+  +CSS SP ILED +   +EI+    P+
Sbjct: 36  RGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPLILEDGFSDLEEIRFRRVPK 95

Query: 552 KRSCNGLYSLIDDNIQMSAEKDKPAFLTSLQATEASQFSLLMKNLDKLEKMFSDSDVIRL 373
             S N +      N QM     + +    L+A  A+ FSLL+KNLD LE+ F++SDV++L
Sbjct: 96  SSSSNTI-----GNNQMPDSDFRSS--KGLEACSAAHFSLLLKNLDALEETFANSDVLKL 148

Query: 372 ERDILQQLKRLGALRLFNTCLSRSLKSSILFDLSDAPTQLVEETRINEPVDDHEGKVVVQ 193
           E +IL QL RLGAL+LF+  LSR+L SS  F LSD PT  +EE ++++ VD+  GK +V+
Sbjct: 149 ENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSDIPTVPIEEDKMDKKVDNDRGKTIVR 208

Query: 192 SGKKEQRRLRRKRALEKGNDSSILELPSETISG---DXXXXXXXXXXXXXXKLKIAKNEA 22
           SGKKE+RR  RKRA +    SS L  P  T  G                  +L I  NEA
Sbjct: 209 SGKKEERR-SRKRASDNARVSSELLPPKTTWEGFKPPTVSSAKRASNSRRRRLTIVLNEA 267

Query: 21  EMSSGVK 1
           E+S+GVK
Sbjct: 268 ELSTGVK 274