BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00013712
         (418 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...    67   4e-09
gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...    67   6e-09

>gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1784

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = -2

Query: 414  SSLQPDFSSVQPDFSLVQPDFSILQPNLAFL*PHLSIIQSNFSIIQPHLTCV*PNLSWL* 235
            + LQP F+ + PD + +QP F+ L P++  L P+ + +  + + +QP+ T + P+++ L 
Sbjct: 1634 TELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTGLL 1693

Query: 234  PHLPELQPYLSKLQSYVPELQS-LSQIQPFPSIFTY*SKDHTF*SIQSLLSKLQP 73
            P + ELQPYL++L   V ELQ  ++ +Q F  +F+   KD     +QS  SKLQP
Sbjct: 1694 PDVTELQPYLTELLPEVTELQPYVTLVQSFTCLFSKQPKDDE--PVQSSSSKLQP 1746



 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 31/88 (35%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = -2

Query: 408  LQPDFSSVQPDFSLVQPDFSILQPNLAFL*PHLSIIQSNFSIIQPHLTCV*PNLSWL*PH 229
            LQPD + +QPD + +QP F+ L PN+  L P+ + +  + + +QP+ T + P+++ L P+
Sbjct: 1594 LQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYFTELLPDVTELQPY 1653

Query: 228  LPELQPYLSKLQSYVPE-LQSLSQIQPF 148
              EL P +++LQ Y  E L  ++++QP+
Sbjct: 1654 FTELLPDVTELQPYFTELLPDVTELQPY 1681


>gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 1846

 Score = 66.6 bits (161), Expect = 6e-09
 Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
 Frame = -2

Query: 417  FSSLQPDFSSVQPDFSLVQPDFSILQPNLAFL*PHLSIIQSNFSIIQPHLTCV*PNLSWL 238
            F+ L PD + +QP F+ + PD + LQP    L P ++ +Q  F+ + P +T + P  + L
Sbjct: 1695 FTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTEL 1754

Query: 237  *PHLPELQPYLSKLQSYVPELQS-LSQIQPFPSIFTY*SKDHTF*SIQSLLSKLQP 73
             P + ELQPYL++L   V ELQ  ++ +Q F  +F+   KD     IQS  SKLQP
Sbjct: 1755 LPDVTELQPYLTELLPEVTELQPYVTFVQSFTCLFSKQPKDDE--PIQSSSSKLQP 1808



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
 Frame = -2

Query: 414  SSLQPDFSSVQPDFSLVQPDFSILQPNLAFL*PHLSIIQSNFSIIQPHLTCV*PNLSWL* 235
            + LQPD + +QP  + +QPD + LQP    L P ++ +Q  F+ + P +T + P  + L 
Sbjct: 1654 TELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELL 1713

Query: 234  PHLPELQPYLSKLQSYVPELQ--------SLSQIQPFPSIFTY*SKDHTF*SIQSLLSKL 79
            P + ELQPY +KL   V ELQ         ++++QP+   FT    D T   +Q  L++L
Sbjct: 1714 PDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPY---FTELLPDVT--ELQPYLTEL 1768

Query: 78   QPD 70
             P+
Sbjct: 1769 LPE 1771



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
 Frame = -2

Query: 408  LQPDFSSVQPDFSLVQPDFSILQPNLAFL*PHLSIIQSNFSIIQPHLTCV*PNLSWL*PH 229
            LQPD + +QPD + +QP  + LQP++  L P+ + +  + + +QP+ T + P+++ L P+
Sbjct: 1649 LQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVTELQPY 1708

Query: 228  LPELQPYLSKLQSYVPE-LQSLSQIQPFPSIFTY*SKDHTF*SIQSLLSKLQPD 70
              EL P +++LQ Y  + L  ++++QP+   FT    D T   +Q   ++L PD
Sbjct: 1709 FTELLPDVTELQPYFTKLLPDVTELQPY---FTELLPDVT--ELQPYFTELLPD 1757