BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00013058
         (3106 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP18969.1| unnamed protein product [Coffea canephora]           1040   0.0  
ref|XP_012831645.1| PREDICTED: RNA polymerase II C-terminal doma...  1001   0.0  
ref|XP_009803071.1| PREDICTED: RNA polymerase II C-terminal doma...   998   0.0  
ref|XP_009627456.1| PREDICTED: RNA polymerase II C-terminal doma...   997   0.0  
ref|XP_006341905.1| PREDICTED: RNA polymerase II C-terminal doma...   976   0.0  
ref|XP_004252660.1| PREDICTED: RNA polymerase II C-terminal doma...   938   0.0  
ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphat...   910   0.0  
ref|XP_010656789.1| PREDICTED: RNA polymerase II C-terminal doma...   904   0.0  
gb|AAV92930.1| putative transcription regulator CPL1 [Solanum ly...   902   0.0  
ref|XP_010656786.1| PREDICTED: RNA polymerase II C-terminal doma...   902   0.0  
ref|XP_010656784.1| PREDICTED: RNA polymerase II C-terminal doma...   899   0.0  
ref|XP_012459417.1| PREDICTED: RNA polymerase II C-terminal doma...   876   0.0  
emb|CBI35661.3| unnamed protein product [Vitis vinifera]              875   0.0  
ref|XP_010100046.1| RNA polymerase II C-terminal domain phosphat...   872   0.0  
ref|XP_012088736.1| PREDICTED: RNA polymerase II C-terminal doma...   872   0.0  
gb|KDO83167.1| hypothetical protein CISIN_1g000897mg [Citrus sin...   870   0.0  
gb|KDO83165.1| hypothetical protein CISIN_1g000897mg [Citrus sin...   870   0.0  
ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citr...   870   0.0  
ref|XP_006438858.1| hypothetical protein CICLE_v10030535mg [Citr...   870   0.0  
ref|XP_012459418.1| PREDICTED: RNA polymerase II C-terminal doma...   867   0.0  

>emb|CDP18969.1| unnamed protein product [Coffea canephora]
          Length = 1210

 Score = 1040 bits (2688), Expect = 0.0
 Identities = 586/1048 (55%), Positives = 704/1048 (67%), Gaps = 14/1048 (1%)
 Frame = -3

Query: 3104 AADAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKK 2925
            A +AEKSF  +  R+++L+D+++E+   +++  KD LVQL+  AI+ + +VFCSM+ +KK
Sbjct: 170  ANEAEKSFGEVSSRVQNLLDSMREIAENNILTTKDVLVQLVITAIKTLNAVFCSMDLNKK 229

Query: 2924 EQNRDILSR-LLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGE 2748
            E ++DI+SR LLA+V S K  LFS  QLK++    S +D S+ +L+          R   
Sbjct: 230  EYSKDIMSRWLLAHVSSQKY-LFSAEQLKEIEAMTSLLDSSSETLSSMDANRNNEMRELR 288

Query: 2747 APINTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVF 2568
                 D D   +N   V    K   ++S+S  SS        +E  KS V N K+KGL  
Sbjct: 289  VVSKNDLDSSAENMKRVPE--KVFNVDSISVESSDQPVPPALLEYGKSGVANSKYKGLSL 346

Query: 2567 PLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNE 2388
            PLLDLHKDHDADSLPSPT+     LP  KGF +GHGL+KPEWPVPR  LERENV MHP E
Sbjct: 347  PLLDLHKDHDADSLPSPTQGAPSCLPIVKGFSVGHGLLKPEWPVPRVALERENVPMHPYE 406

Query: 2387 TDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTS 2208
            TDAVKA S+YQQKFG +S  M+D+LPSPTPSEDGD GD D  GEVSSSS   ++ P++TS
Sbjct: 407  TDAVKAVSSYQQKFGGSSFLMNDRLPSPTPSEDGDGGDGDSSGEVSSSS-SMDVKPVDTS 465

Query: 2207 IVGQSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSG 2028
            +VGQ T S    + I++GQ  ++      ++  P+  +K+SSAKSRDPRLRL NSD  S 
Sbjct: 466  MVGQLTASDAPKIGILTGQGLANLLNAPSLSSGPSSSMKTSSAKSRDPRLRLANSDVASL 525

Query: 2027 DLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRN---------NLHAV 1878
            D    LLP+ + +PKVEP+G M+SSRKQKT +E V+ GP+ KRQRN         ++  V
Sbjct: 526  D---RLLPVVNGEPKVEPVGGMISSRKQKTIEEQVMDGPALKRQRNEQTDSSVVKSVQTV 582

Query: 1877 TGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCT 1698
            +GTGGWLEDRGT G+   N S  +                       +GN+  +      
Sbjct: 583  SGTGGWLEDRGTAGLGATNRSHAL---------------------NSSGNDPMR------ 615

Query: 1697 TLPVTGPITSLPTIGPPTSLAATGPFTSLPVKG-PTLPVTDPTNTASLHSLLKDIAGNPS 1521
                  P  ++  +   +SLA      ++ V G   LP+T+P  TASLHSLLKDIA NPS
Sbjct: 616  ------PEYAVTPLSSGSSLA------NVTVNGNKNLPLTNPGATASLHSLLKDIAVNPS 663

Query: 1520 IWMNILKMEQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGHISAGLLKTPMQA 1341
            IWMNI+KMEQ KS D  +S + P  SNSI G+V ++   P +    G  +AG  +   Q 
Sbjct: 664  IWMNIIKMEQQKSADPTRSTSQPTCSNSINGSVNAVVSKPRDL---GQRAAGTFQVTSQT 720

Query: 1340 TSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVGQG--MTSSLGAQMQEDQ 1167
             S  E GKVRMKPRDPRR LHN T QKG S+  DQ +   +      M  ++  Q+Q+DQ
Sbjct: 721  ASVAEPGKVRMKPRDPRRVLHNNTLQKGGSMEFDQSQTKSSTSSNPEMVGNINFQIQDDQ 780

Query: 1166 LDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMK 987
            LDR+ V SN I  PDI +QFT NLKNIADIV                     Q YQG+ +
Sbjct: 781  LDRRVVPSNSIVQPDIAQQFTKNLKNIADIVSVSQATSSQPALPQISLSQPSQAYQGRTE 840

Query: 986  TKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXX 807
            T G++ ES   +SG GLSS+EV+   SRPQN W DVEHLFEGFDDQQKAA          
Sbjct: 841  TIGML-ESGKPQSGPGLSSKEVSMGSSRPQNNWDDVEHLFEGFDDQQKAAIHRERARRMQ 899

Query: 806  XQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMG 627
             Q+ MF  RK                FVEVDP+HDE+LRKKEEQDREKPHRHLFRFPHMG
Sbjct: 900  EQRKMFAGRKLCL-------------FVEVDPMHDEILRKKEEQDREKPHRHLFRFPHMG 946

Query: 626  MWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDS 447
            MWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEMAKLLDPKGELFAGRVISRGDDGD 
Sbjct: 947  MWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGELFAGRVISRGDDGDL 1006

Query: 446  FDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPG 267
             D ++RVPKSKDLEGV+GMES+VVIIDDS+RVWPHNKLNLI VERYI+FPCSRRQFGLPG
Sbjct: 1007 LDGDERVPKSKDLEGVMGMESSVVIIDDSLRVWPHNKLNLIVVERYIFFPCSRRQFGLPG 1066

Query: 266  PSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRIL 87
            PSLLEIDHDER EDGTLASSLAVIERIHE FFAHQSLDEADVRNILASEQ KIL+GCRI+
Sbjct: 1067 PSLLEIDHDERSEDGTLASSLAVIERIHEIFFAHQSLDEADVRNILASEQRKILAGCRIV 1126

Query: 86   FSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1127 FSRVFPVGEANPHLHPLWQTAEQFGAVC 1154


>ref|XP_012831645.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X1 [Erythranthe guttatus]
            gi|604343093|gb|EYU42076.1| hypothetical protein
            MIMGU_mgv1a000356mg [Erythranthe guttata]
          Length = 1220

 Score = 1001 bits (2589), Expect = 0.0
 Identities = 582/1041 (55%), Positives = 683/1041 (65%), Gaps = 8/1041 (0%)
 Frame = -3

Query: 3101 ADAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKE 2922
            ADA  S+  LC  L++ + +LQE+V E   AEKD LVQLL  AIQ +YSVF SM+   KE
Sbjct: 212  ADAIISYHRLCSSLKNTIVSLQEMVLEGSFAEKDTLVQLLLTAIQTLYSVFSSMSPKLKE 271

Query: 2921 QNRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAP 2742
            QN+ ILSRLLA V SLK PLFS  QL+K    R SM+ S  S            RVG A 
Sbjct: 272  QNKPILSRLLARVTSLKPPLFSPLQLEKAEAIRFSMESSVESFR--NDSNNGRERVGTA- 328

Query: 2741 INTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPL 2562
               D  VL + AN  S  L+K  IES  +GS    ECR ++  + S     +HKG+  PL
Sbjct: 329  ---DLHVLLETANTDSIDLRKCEIESGPSGSPDQTECRSNLGLVIS-----RHKGVTRPL 380

Query: 2561 LDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETD 2382
            +DLHKDHDADSLPSPTR+ S PLPFDKGF++GHGL+KPEWPVP + +ER+N++MHP ETD
Sbjct: 381  IDLHKDHDADSLPSPTRDLSAPLPFDKGFIMGHGLLKPEWPVPGRNIERDNILMHPYETD 440

Query: 2381 AVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGD-NGDVDIGGEVSSSSIPRNIVPLNTSI 2205
            AV A S+YQQKFGR+S F++DKLPSPTPSEDG  +GD +I GEVSSS I      +N   
Sbjct: 441  AVIAVSSYQQKFGRSSFFVNDKLPSPTPSEDGQTSGDGEINGEVSSSIIHHVNPAVNILT 500

Query: 2204 VGQSTVSSVADMDI-ISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSG 2028
              Q  VSS   MD   + ++ +S R          PVLKS+SAKSRDPRLRL NSDAG+ 
Sbjct: 501  SVQPVVSSSVAMDTSATPEISNSLRN---------PVLKSTSAKSRDPRLRLSNSDAGAK 551

Query: 2027 DLNKSLLPMASTDPKVEPLGMMSSRKQKTFDEPVLYGPSSKRQRNNLHAVTGTGGWLEDR 1848
            + NKSL  + S + K E  GM+S                S++Q+ N   V          
Sbjct: 552  NPNKSLSAVGSEESKWESSGMVS----------------SRKQKTNEELVL--------- 586

Query: 1847 GTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLPVTGPITS 1668
                       +G  L+R  +                      ++ GP T +P+    TS
Sbjct: 587  -----------NGPALKRQRN----------------------ELSGPSTAMPLVSA-TS 612

Query: 1667 LPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMNILKMEQL 1488
               +  P S       TS   K P+    +   T+SLHSLLKDIA +PSIWMNILKME L
Sbjct: 613  TSQMTLPVSAPIMSLLTSQSEKFPS---KNSNATSSLHSLLKDIAVDPSIWMNILKMENL 669

Query: 1487 KSVDSIKSMTLPPNSNSILGAVPS-ITVSPSNSPVPGHISAGLLKTPMQATSTEESGKVR 1311
            KS D IKSMT   NSNS+LGAVPS + V P +S + G ISAG ++ P QA S EESGKVR
Sbjct: 670  KSSDDIKSMTQISNSNSVLGAVPSPVGVMPLSSTI-GQISAGTVQIPSQAVSVEESGKVR 728

Query: 1310 MKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVGQGMTSSLGAQMQEDQLDRKPVSSNLIA 1131
            MKPRDPRR LHN   QK  +  +DQPK + + G    S++    QEDQL+ K +SS+ + 
Sbjct: 729  MKPRDPRRVLHNNAPQKDVTSVADQPKADASFG----SAMNTPKQEDQLENK-MSSSSMK 783

Query: 1130 PPDITRQFTTNLKNIADI--VXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVVSESSN 957
            PPDIT QFT NL+NIAD+  V                      +  GK +T+G ++E  N
Sbjct: 784  PPDITMQFTNNLRNIADLLSVSQICTTSPVLAQIPSLQPAQGDLIAGK-ETRGPIAEYGN 842

Query: 956  LRSGIGLSSQEV-TAALSRP--QNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNMFG 786
            +R+   +++ E  T++  RP   NAW DVEHLFEGFDDQQK A           Q  +F 
Sbjct: 843  IRNVTDITTSEAATSSPPRPLNANAWSDVEHLFEGFDDQQKVAIQRERARRLEEQNKLFA 902

Query: 785  ARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKLRP 606
             RK           LNSAKFVEVDP HDEMLRKKEEQDREKPHRHLFRFPHMGMWTKLRP
Sbjct: 903  VRKLCLVLDLDHTLLNSAKFVEVDPQHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKLRP 962

Query: 605  GIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSEDRV 426
            G+WNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELF+GRVISRGDDG+ FDS+DR 
Sbjct: 963  GVWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFSGRVISRGDDGEPFDSDDRA 1022

Query: 425  PKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLEID 246
            PKSKDLEGVLGMES VVIIDDS+RVWPHNKLNLI VERYIYFPCSRRQFGLPGPSLLEID
Sbjct: 1023 PKSKDLEGVLGMESGVVIIDDSIRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLEID 1082

Query: 245  HDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRVFPV 66
            HDERPEDGTLAS   VIERIHE FF H+SL+EADVRNILASEQ KIL+GCRI+FSRVFPV
Sbjct: 1083 HDERPEDGTLASCSTVIERIHENFFGHESLNEADVRNILASEQRKILAGCRIVFSRVFPV 1142

Query: 65   GETNPHMHPLWQTAEQFGAVC 3
            GE  PHMHPLWQTAEQFGAVC
Sbjct: 1143 GEAKPHMHPLWQTAEQFGAVC 1163


>ref|XP_009803071.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Nicotiana sylvestris] gi|698516385|ref|XP_009803072.1|
            PREDICTED: RNA polymerase II C-terminal domain
            phosphatase-like 3 [Nicotiana sylvestris]
          Length = 1241

 Score =  998 bits (2579), Expect = 0.0
 Identities = 562/1043 (53%), Positives = 687/1043 (65%), Gaps = 11/1043 (1%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            + EKSF  +C +L++ +D++ EL +     + D LVQL   AIQIV SVFCSMNQ++KEQ
Sbjct: 187  EMEKSFPVVCSKLQNSLDSVGELAASP---DSDDLVQLFMTAIQIVNSVFCSMNQNQKEQ 243

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            NR+ILSRLL +V S    L S  QLK++     S++ SAVS            +V +   
Sbjct: 244  NREILSRLLLHVKSQVPALLSSEQLKEVDAVILSINQSAVSSITEDNDQDNVIKVVKVLD 303

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              DS    +NAN   T +KK  ++  ST SSG  E  VS E +K  + N K +GL  PLL
Sbjct: 304  MNDSHSSSENANQDCTSVKKCDLDVESTKSSGPKEQNVSFEYIKPGLANSKARGLSVPLL 363

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHD D+LPSPTRE +P  P  K     HG+VKPE P+    LE+ + ++HP ETDA
Sbjct: 364  DLHKDHDIDTLPSPTREIAPIFPIAKASTQTHGVVKPELPMFTGALEKGSSLLHPYETDA 423

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KA S+YQQKFGR+S+F S+K PSPTPS +GD+G+ D GGEVSSS++  N   LN S   
Sbjct: 424  LKAVSSYQQKFGRSSLFDSEKFPSPTPSNEGDSGEGDTGGEVSSSNVGHNASVLNASSTW 483

Query: 2198 QSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSGDLN 2019
            Q  VSSV   +I++GQ   +AR   P++  P P L+SS+AKSRDPRLRL  S+A + +L 
Sbjct: 484  QPIVSSVPPTNILAGQGLGTARNADPLSFLPNPSLRSSTAKSRDPRLRLATSEAAAQNLT 543

Query: 2018 KSLLPMASTDPKVEP-LGMMSSRKQKTFDEPVLYGPSSKRQRN---------NLHAVTGT 1869
            K +LP+ + D K+E  L M+ SRKQK  ++P    P  KRQR+         ++   TG 
Sbjct: 544  KKMLPIPNIDLKLEASLEMIGSRKQKIVEQPAFDAPLLKRQRSEQTDSIIVSDVRPSTGN 603

Query: 1868 GGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLP 1689
            GGWLE RGTVG+ +   SS  V   S+                 N   K +         
Sbjct: 604  GGWLEHRGTVGLPIT--SSNYVTDSSD-----------------NDTRKLE--------Q 636

Query: 1688 VTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMN 1509
            VT  +++  TI P   + A     +LP+ G          +A+LHSLLKDIA NPSIWMN
Sbjct: 637  VTSSVSTSNTI-PSVIVNAD---VNLPLTG---------TSANLHSLLKDIAINPSIWMN 683

Query: 1508 ILKMEQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGHISAGLLKTPMQATSTE 1329
            I+K+EQ KS D+ K+ T+  +S+SILGAVPS  V+   S V G  S G+++TP Q T+ +
Sbjct: 684  IIKLEQQKSADASKTTTVASSSSSILGAVPSTNVAAPKSSVIGQRSVGIIQTPTQTTAAD 743

Query: 1328 ESGKVRMKPRDPRRFLHNGTSQKGWSVGS-DQPKINPAVGQGMTSSLGAQMQEDQLDRKP 1152
            E  KVRMKPRDPRR LHN   QK  + GS DQ K   A  Q M SS   Q  EDQLDRK 
Sbjct: 744  EVAKVRMKPRDPRRVLHNTAVQKSGNSGSADQCKTGVAGTQAMISSHCVQRPEDQLDRKS 803

Query: 1151 VSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVV 972
                   PPDI RQFT NLKNIAD++                      V+  +++  G V
Sbjct: 804  AVIPSTTPPDIARQFTKNLKNIADMISVSPTSTSPSAASQTPAQHMQ-VHPSRLEGNGAV 862

Query: 971  SESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNM 792
            SESS L +  GL+S +      + Q++WG+VEHLFEG+ DQQ+A+           QK M
Sbjct: 863  SESSELLTDAGLASGKAPPGSLQLQSSWGNVEHLFEGYSDQQRASIQRERTRRLEEQKKM 922

Query: 791  FGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKL 612
            F  RK           LNSAKFVE+DP+H E+LRKKEEQDREKP++HLFRFPHMGMWTKL
Sbjct: 923  FSVRKLCLVLDLDHTLLNSAKFVEIDPVHQEILRKKEEQDREKPYKHLFRFPHMGMWTKL 982

Query: 611  RPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSED 432
            RPGIWNFLEKASKL+ELHLYTMGNK YATEMAKLLDPKG+LFAGRVISRGDDGD  D ++
Sbjct: 983  RPGIWNFLEKASKLFELHLYTMGNKLYATEMAKLLDPKGDLFAGRVISRGDDGDPLDGDE 1042

Query: 431  RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLE 252
            R+PKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERYIYFPCSRRQFGLPGPSLLE
Sbjct: 1043 RIPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLE 1102

Query: 251  IDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRVF 72
            IDHDERPEDGTLAS L VI+RIH+ FF H+S+DEADVRNILA+EQ KIL+GCRI+FSRVF
Sbjct: 1103 IDHDERPEDGTLASCLGVIQRIHQNFFEHRSIDEADVRNILATEQQKILAGCRIVFSRVF 1162

Query: 71   PVGETNPHMHPLWQTAEQFGAVC 3
            PVGE NPH HPLWQTAEQFGAVC
Sbjct: 1163 PVGEANPHFHPLWQTAEQFGAVC 1185


>ref|XP_009627456.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Nicotiana tomentosiformis]
            gi|697093792|ref|XP_009627526.1| PREDICTED: RNA
            polymerase II C-terminal domain phosphatase-like 3
            [Nicotiana tomentosiformis]
          Length = 1236

 Score =  997 bits (2577), Expect = 0.0
 Identities = 561/1043 (53%), Positives = 688/1043 (65%), Gaps = 11/1043 (1%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            + EKSF  +C +L++ +D+++EL +     + D LV+L   AIQ V SVFCSMNQ++KEQ
Sbjct: 182  EMEKSFPVVCSKLQNSLDSVRELAASP---DSDDLVRLFMTAIQTVNSVFCSMNQNQKEQ 238

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            NR+ILSRLL +  S    L S  QLK++     S++ SAVS            +V E   
Sbjct: 239  NREILSRLLLHAKSQVPSLLSSEQLKEVDAVILSINQSAVSSITEDNDRDNGIKVVEVLD 298

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              DS    +NAN  ST LKK  ++  ST SSG  E  VS E LK  + N K + L  PLL
Sbjct: 299  MNDSHTSSENANQDSTSLKKCDLDVESTKSSGPKEQNVSFESLKPGLANSKARRLSVPLL 358

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHD D+LPSPTRE +   P  K     HG+VKPE P+    LE+ + ++HP ETDA
Sbjct: 359  DLHKDHDIDTLPSPTREIALIFPIAKASTQAHGVVKPELPMFTGVLEKGSSLLHPYETDA 418

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KA S+YQQKFGR+S+F+S+K PSPTPS++GD+G+ D GGEVSSS++  N   LNTS   
Sbjct: 419  LKAVSSYQQKFGRSSLFVSEKFPSPTPSDEGDSGEGDTGGEVSSSNVGHNASILNTSSTW 478

Query: 2198 QSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSGDLN 2019
               VSSV   +I++GQ   +AR   P++  P P L+SS+AKSRDPRLRL  S+A + +LN
Sbjct: 479  LPIVSSVPPTNILAGQGLGTARNADPLSFLPNPSLRSSTAKSRDPRLRLATSEAAAQNLN 538

Query: 2018 KSLLPMASTDPKVEP-LGMMSSRKQKTFDEPVLYGPSSKRQRN---------NLHAVTGT 1869
              +LP+ + D K+E  L M+ SRKQK  ++P       KRQR+         ++   TG 
Sbjct: 539  MKMLPIPNIDLKLEASLEMIQSRKQKIAEQPAFDASLLKRQRSEQTDSIIVSDVRPSTGN 598

Query: 1868 GGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLP 1689
            GGWLE RGT G+ +   SS  V   S                 GNG  K +         
Sbjct: 599  GGWLEHRGTAGLPIT--SSNYVTDSS-----------------GNGTRKLE--------Q 631

Query: 1688 VTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMN 1509
            VT  +++  T+ P   + A     +LP+ G          +A+LHSLLKDIA NPSIWMN
Sbjct: 632  VTSSVSTSNTM-PSVIVNAD---VNLPLTG---------TSANLHSLLKDIAINPSIWMN 678

Query: 1508 ILKMEQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGHISAGLLKTPMQATSTE 1329
            I+K+EQ KS D  K+ TL  +S+SILGAVPS  V+ S + + G  S G+++ P Q  + +
Sbjct: 679  IIKLEQQKSADDSKTTTLASSSSSILGAVPSTNVAASRTSMIGQRSVGIIQAPTQTAAAD 738

Query: 1328 ESGKVRMKPRDPRRFLHNGTSQKGWSVGS-DQPKINPAVGQGMTSSLGAQMQEDQLDRKP 1152
            E  KVRMKPRDPRR LHN   QK  +VGS DQ K   A  Q MTSS   Q  EDQLDRK 
Sbjct: 739  EVAKVRMKPRDPRRVLHNTAVQKSGNVGSADQCKTGVAGTQAMTSSHCVQRPEDQLDRKS 798

Query: 1151 VSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVV 972
              +    PPDI RQFT NLKNIAD++                      V+  +++  G V
Sbjct: 799  AVTPSTTPPDIARQFTKNLKNIADMISVSPTSTSPAAASQTPTQHMQ-VHPSRLEGNGAV 857

Query: 971  SESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNM 792
            SESS L +  GL+S +      +PQ++WG+VEHLFEG+ DQQ+A+           QK M
Sbjct: 858  SESSELLTDAGLASGKAPPDSLQPQSSWGNVEHLFEGYSDQQRASIQRERTRRLEEQKKM 917

Query: 791  FGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKL 612
            F  RK           LNSAKFVE+DP+H E+LRKKEEQDREKP+RHLFRF HMGMWTKL
Sbjct: 918  FSVRKLCLVLDLDHTLLNSAKFVEIDPVHQEILRKKEEQDREKPYRHLFRFLHMGMWTKL 977

Query: 611  RPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSED 432
            RPGIWNFLEKASKL+ELHLYTMGNK YATEMAKLLDPKG+LFAGRVISRGDDGD  D ++
Sbjct: 978  RPGIWNFLEKASKLFELHLYTMGNKLYATEMAKLLDPKGDLFAGRVISRGDDGDPLDGDE 1037

Query: 431  RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLE 252
            R+PKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERYIYFPCSRRQFGLPGPSLLE
Sbjct: 1038 RIPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLE 1097

Query: 251  IDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRVF 72
            IDHDERPEDGTLAS L VI+RIH+ FF H+S+DEADVRNILA+EQ KIL+GCRI+FSRVF
Sbjct: 1098 IDHDERPEDGTLASCLGVIQRIHQNFFEHRSIDEADVRNILATEQQKILAGCRIVFSRVF 1157

Query: 71   PVGETNPHMHPLWQTAEQFGAVC 3
            PVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1158 PVGEANPHLHPLWQTAEQFGAVC 1180


>ref|XP_006341905.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Solanum tuberosum]
          Length = 1218

 Score =  976 bits (2523), Expect = 0.0
 Identities = 552/1043 (52%), Positives = 671/1043 (64%), Gaps = 11/1043 (1%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            +  KSF  +C +L++ +  L EL       + D L+QL   A++ + SVF SMNQ +K+Q
Sbjct: 166  ETHKSFSMVCSKLQTSLLALGELALSQ--DKNDILIQLFMTALRTINSVFYSMNQDQKQQ 223

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N DILSRLL +  +    L S  QLK++     S++ SAV  N          +V E   
Sbjct: 224  NTDILSRLLFHAKTQLPALLSSEQLKEVDAVILSINQSAVFSNTQDNDKVNGIKVVELLD 283

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
               S    +NAN   T + K  + ++S  SSGL E  VS E +K  + N K KGL  PLL
Sbjct: 284  KKVSHKSSENANQDFTAVNKYDLGAVSIKSSGLKEQSVSFESVKPGLANSKAKGLSIPLL 343

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHD D+LPSPTRE  P  P  K     HG+VK + P+   +LE+ N ++HP ETDA
Sbjct: 344  DLHKDHDEDTLPSPTREIGPQFPVAKA-TQAHGMVKLDLPIFAGSLEKGNSLLHPYETDA 402

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KA S+YQQKFGR+S+F+S+ LPSPTPSE+GD+G  DIGGEV+S  +  N   LN S +G
Sbjct: 403  LKAVSSYQQKFGRSSLFVSENLPSPTPSEEGDSGKGDIGGEVTSLDVVHNASHLNESSMG 462

Query: 2198 QSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSGDLN 2019
            Q  +SSV   +I+ GQ   +ART  P++  P P L+SS+AKSRDPRLRL  SDA + + N
Sbjct: 463  QPILSSVPQTNILDGQGLGTARTADPLSFLPNPSLRSSTAKSRDPRLRLATSDAVAQNTN 522

Query: 2018 KSLLPMASTDPKVEP-LGMMSSRKQKTFDEPVLYGPSSKRQRN---------NLHAVTGT 1869
            K++LP+   D K+E  L M+ S+KQKT D PV   P  KRQR+         ++   TG 
Sbjct: 523  KNILPIPDIDLKLEASLEMIGSKKQKTVDLPVFGAPLPKRQRSEQTDSIIVSDVRPSTGN 582

Query: 1868 GGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLP 1689
            GGWLEDRGT G+ +   SS      S+                 N   K +         
Sbjct: 583  GGWLEDRGTAGLPIT--SSNCATDSSD-----------------NDIRKLE--------Q 615

Query: 1688 VTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMN 1509
            VT  I ++P++              +       PVT  + + +LHSLLKDIA NPSIWMN
Sbjct: 616  VTATIATIPSV--------------IVNAAENFPVTGISTSTTLHSLLKDIAINPSIWMN 661

Query: 1508 ILKMEQLKSVDSIKSMTLPPNSN-SILGAVPSITVSPSNSPVPGHISAGLLKTPMQATST 1332
            I+KMEQ KS D+ ++ T   +S+ SILGAVPS       S   G  S G+L+TP    S 
Sbjct: 662  IIKMEQQKSADASRTTTAQASSSKSILGAVPSTDAIAPRSSAIGQRSVGILQTPTHTASA 721

Query: 1331 EESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVGQGMTSSLGAQMQEDQLDRKP 1152
            +E   VRMKPRDPRR LHN    KG +VGSDQ K   A      S+LG Q QEDQLDRK 
Sbjct: 722  DEVAIVRMKPRDPRRVLHNTAVLKGGNVGSDQCKTGVAGTHATISNLGFQSQEDQLDRKS 781

Query: 1151 VSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVV 972
              +    PPDI RQFT NLKNIAD++                       +Q + + K  V
Sbjct: 782  AVTLSTTPPDIARQFTKNLKNIADMISVSPSTSLSAASQTQTQCLQS--HQSRSEGKEAV 839

Query: 971  SESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNM 792
            SE S   +  GL+S++ +    +PQ +WGDVEHLFEG+ DQQ+A            QK M
Sbjct: 840  SEPSERVNDAGLASEKGSPGSLQPQISWGDVEHLFEGYSDQQRADIQRERARRLEEQKKM 899

Query: 791  FGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKL 612
            F  RK           LNSAKFVE+DP+H+E+LRKKEEQDREKP RHLFRFPHMGMWTKL
Sbjct: 900  FSVRKLCLVLDLDHTLLNSAKFVEIDPVHEEILRKKEEQDREKPCRHLFRFPHMGMWTKL 959

Query: 611  RPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSED 432
            RPGIWNFLEKAS L+ELHLYTMGNK YATEMAKLLDPKG+LFAGRVISRGDDGD FD ++
Sbjct: 960  RPGIWNFLEKASNLFELHLYTMGNKLYATEMAKLLDPKGDLFAGRVISRGDDGDPFDGDE 1019

Query: 431  RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLE 252
            RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERYIYFPCSRRQFGLPGPSLLE
Sbjct: 1020 RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLE 1079

Query: 251  IDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRVF 72
            IDHDERPEDGTLAS L VI+RIH+ FFAH+S+DEADVRNILA+EQ KIL+GCRI+FSRVF
Sbjct: 1080 IDHDERPEDGTLASCLGVIQRIHQNFFAHRSIDEADVRNILATEQKKILAGCRIVFSRVF 1139

Query: 71   PVGETNPHMHPLWQTAEQFGAVC 3
            PVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1140 PVGEANPHLHPLWQTAEQFGAVC 1162


>ref|XP_004252660.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Solanum lycopersicum]
          Length = 1211

 Score =  938 bits (2424), Expect = 0.0
 Identities = 537/1044 (51%), Positives = 661/1044 (63%), Gaps = 12/1044 (1%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            +  KSF  +C +L++ +  L EL       + D L+QL   A++ + SVF SMN  +K+Q
Sbjct: 165  ETHKSFSMVCSKLQTSLLALGELALSQ--DKNDILIQLFMTALRTINSVFYSMNDHQKQQ 222

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N DILSRLL    +    L S  QLK++     S++ S VS N           V +   
Sbjct: 223  NTDILSRLLFNAKTQLPALLSSEQLKELDALILSINHSLVSSNTQDNDTVNGINVVQLLD 282

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              DS    +NAN   T + K  +  +S  SSGL E  VS E +K  + N K KGL FPLL
Sbjct: 283  MKDSHKSSENANQDFTSVNKYDLGDVSIKSSGLKEQSVSSESVKPGLDNSKAKGLSFPLL 342

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHD D+LPSPTR+  P  P  +     HG+VK + P+   +L++ N ++HP ETDA
Sbjct: 343  DLHKDHDEDTLPSPTRQIGPQFPATQT----HGMVKLDLPIFPASLDKGNSLLHPYETDA 398

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KA S+YQQKFGR+S+F+S+ LPSPTPSE+ D+G  D GGEV+S  +  N   LN S +G
Sbjct: 399  LKAVSSYQQKFGRSSLFVSENLPSPTPSEEDDSGKGDTGGEVTSFDVVHNASHLNESSMG 458

Query: 2198 QSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSGDLN 2019
            Q  +SSV   +I+ GQ   + RT  P++  P P L+SS+AKSRDPRLRL  SD  +    
Sbjct: 459  QPILSSVPQTNILDGQGLGTTRTADPLSFLPNPSLRSSTAKSRDPRLRLATSDTVA---Q 515

Query: 2018 KSLLPMASTDPKVEP-LGMMSSRKQKTFDEPVLYGPSSKRQRN---------NLHAVTGT 1869
             ++LP+   D K+E  L M+ S+KQKT D      P  KRQR+         ++    G 
Sbjct: 516  NTILPIPDIDLKLEASLEMIVSKKQKTVDLSAFDAPLPKRQRSEQTDSIIVSDVRPSIGN 575

Query: 1868 GGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLP 1689
            GGWLEDRGT  + +   SS      S+                 N   K +         
Sbjct: 576  GGWLEDRGTAELPIT--SSNCATYNSD-----------------NDIRKLE--------Q 608

Query: 1688 VTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMN 1509
            VT  I ++P++              +       PVT  + + +LHSLLKDIA NPSIWMN
Sbjct: 609  VTATIATIPSV--------------IVNAAENFPVTGISTSTTLHSLLKDIAINPSIWMN 654

Query: 1508 ILKMEQLKSVDSIKSMTLPPNSN-SILGAVPS-ITVSPSNSPVPGHISAGLLKTPMQATS 1335
            I+K EQ KS D+ ++ T   +S+ SILGAVPS + V+P +S + G  S G+L+TP    S
Sbjct: 655  IIKTEQQKSADASRTNTAQASSSKSILGAVPSTVAVAPRSSAI-GQRSVGILQTPTHTAS 713

Query: 1334 TEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVGQGMTSSLGAQMQEDQLDRK 1155
             +E   VRMKPRDPRR LH+    KG SVG DQ K   A      S+L  Q QEDQLDRK
Sbjct: 714  ADEVAIVRMKPRDPRRVLHSTAVLKGGSVGLDQCKTGVAGTHATISNLSFQSQEDQLDRK 773

Query: 1154 PVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGV 975
               +    PPDI  QFT NLKNIAD++                       YQ + + KG 
Sbjct: 774  SAVTLSTTPPDIACQFTKNLKNIADMISVSPSTSPSVASQTQTLCIQ--AYQSRSEVKGA 831

Query: 974  VSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKN 795
            VSE S   +  GL+S++ +    +PQ +WGDVEHLFEG+ DQQ+A            QK 
Sbjct: 832  VSEPSEWVNDAGLASEKGSPGSLQPQISWGDVEHLFEGYSDQQRADIQRERTRRLEEQKK 891

Query: 794  MFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTK 615
            MF  RK           LNSAKFVE+DP+H+E+LRKKEEQDREKP+RHLFRFPHMGMWTK
Sbjct: 892  MFSVRKLCLVLDLDHTLLNSAKFVEIDPVHEEILRKKEEQDREKPYRHLFRFPHMGMWTK 951

Query: 614  LRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSE 435
            LRPGIWNFLEKAS L+ELHLYTMGNK YATEMAKLLDPKG+LFAGRVISRGDDGD FD +
Sbjct: 952  LRPGIWNFLEKASNLFELHLYTMGNKLYATEMAKLLDPKGDLFAGRVISRGDDGDPFDGD 1011

Query: 434  DRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLL 255
            +RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERYIYFPCSRRQFGLPGPSLL
Sbjct: 1012 ERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLL 1071

Query: 254  EIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRV 75
            EIDHDERPEDGTLAS L VI+RIH+ FF H+S+DEADVRNILA+EQ KIL+GCRI+FSRV
Sbjct: 1072 EIDHDERPEDGTLASCLGVIQRIHQNFFTHRSIDEADVRNILATEQKKILAGCRIVFSRV 1131

Query: 74   FPVGETNPHMHPLWQTAEQFGAVC 3
            FPVGE +PH+HPLWQTAEQFGAVC
Sbjct: 1132 FPVGEASPHLHPLWQTAEQFGAVC 1155


>ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphatase-like 3, putative
            [Theobroma cacao] gi|508707765|gb|EOX99661.1| RNA
            polymerase II C-terminal domain phosphatase-like 3,
            putative [Theobroma cacao]
          Length = 1290

 Score =  910 bits (2353), Expect = 0.0
 Identities = 543/1061 (51%), Positives = 666/1061 (62%), Gaps = 29/1061 (2%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            +AEKSF+G+C RL + +++L+ L+ E  +  KDAL+QL FGAI    S F ++N + KEQ
Sbjct: 231  EAEKSFEGVCSRLHNALESLRALILECSVPAKDALIQLAFGAIN---SAFVALNCNSKEQ 287

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N  ILSRLL+ V      LF   ++K++ V   S++  A +++          +V +   
Sbjct: 288  NVAILSRLLSIVKGHDPSLFPPDKMKEIDVMLISLNSPARAIDTEKDM-----KVVDGVN 342

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              D D L +N  +  T   K    +    +   N+     E LK  V N +++G+  PLL
Sbjct: 343  KKDPDALPENICHDLTVTNKLPSSAKFVIN---NKPNALTETLKPGVPNFRNRGISLPLL 399

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHDADSLPSPTRET+P LP +K    G  +VK  +   + + + E   +HP ETDA
Sbjct: 400  DLHKDHDADSLPSPTRETTPCLPVNKPLTSGDVMVKSGFMTGKGSHDAEGDKLHPYETDA 459

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KAFSTYQQKFG+ S F SD+LPSPTPSE+  +   D GGEVSSSS   N  P N  I+G
Sbjct: 460  LKAFSTYQQKFGQGSFFSSDRLPSPTPSEESGDEGGDNGGEVSSSSSIGNFKP-NLPILG 518

Query: 2198 QSTVSSVADMDIISGQVHS--SARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSGD 2025
               VSS   +D  S  +    + R  +PM+   + ++  S AKSRDPRL   NS+A + D
Sbjct: 519  HPIVSSAPLVDSASSSLQGQITTRNATPMSS-VSNIVSKSLAKSRDPRLWFANSNASALD 577

Query: 2024 LNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRNNLH---------AVT 1875
            LN+ LL  AS   KV P+G +M SRK+K+ +EP+L  P+ KRQRN L           V+
Sbjct: 578  LNERLLHNAS---KVAPVGGIMDSRKKKSVEEPILDSPALKRQRNELENLGVARDVQTVS 634

Query: 1874 GTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTT 1695
            G GGWLED   +G Q+ N +       S                  NG            
Sbjct: 635  GIGGWLEDTDAIGSQITNRNQTAENLESNSRKMD------------NG------------ 670

Query: 1694 LPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIW 1515
                  +TS  T+   T++               +PVT  T+T SL +LLKDIA NP++ 
Sbjct: 671  ------VTSSSTLSGKTNITVG--------TNEQVPVTS-TSTPSLPALLKDIAVNPTML 715

Query: 1514 MNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITV--SPSNSPVPGHISA 1368
            +NILKM          Q KS D +KS    P+SNS+LG V S  V  SPS + VP  IS+
Sbjct: 716  INILKMGQQQRLGAEAQQKSPDPVKSTFHQPSSNSLLGVVSSTNVIPSPSVNNVPS-ISS 774

Query: 1367 GLLKTP---MQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVG---QG 1206
            G+   P   +Q  S +ESGK+RMKPRDPRR LH  + Q+  S+G DQ K N A+    QG
Sbjct: 775  GISSKPAGNLQVPSPDESGKIRMKPRDPRRVLHGNSLQRSGSMGLDQLKTNGALTSSTQG 834

Query: 1205 MTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXX 1026
               +L AQ  + Q + KP+ S L+ PPDIT+QFT NLKNIADI+                
Sbjct: 835  SKDNLNAQKLDSQTESKPMQSQLVPPPDITQQFTNNLKNIADIMSVSQALTSLPPVSHNL 894

Query: 1025 XXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQ 846
                  +    M  K +VS S + ++G GL+  E  A   R QNAWGDVEHLFE +DDQQ
Sbjct: 895  VPQPVLIKSDSMDMKALVSNSEDQQTGAGLAP-EAGATGPRSQNAWGDVEHLFERYDDQQ 953

Query: 845  KAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDRE 666
            KAA           QK MF ARK           LNSAKF+EVDP+H+E+LRKKEEQDRE
Sbjct: 954  KAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFIEVDPVHEEILRKKEEQDRE 1013

Query: 665  KPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELF 486
            KP RHLFRF HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEMAK+LDPKG LF
Sbjct: 1014 KPERHLFRFHHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLF 1073

Query: 485  AGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYI 306
            AGRVISRGDDGD FD ++RVP+SKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERY 
Sbjct: 1074 AGRVISRGDDGDPFDGDERVPRSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYT 1133

Query: 305  YFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILA 126
            YFPCSRRQFGL GPSLLEIDHDERPEDGTLASSLAVIERIH+ FF+HQ+LD+ DVRNILA
Sbjct: 1134 YFPCSRRQFGLLGPSLLEIDHDERPEDGTLASSLAVIERIHQDFFSHQNLDDVDVRNILA 1193

Query: 125  SEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            SEQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1194 SEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1234


>ref|XP_010656789.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X3 [Vitis vinifera]
          Length = 1273

 Score =  904 bits (2335), Expect = 0.0
 Identities = 534/1070 (49%), Positives = 649/1070 (60%), Gaps = 38/1070 (3%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAE-----KDALVQLLFGAIQIVYSVFCSMNQ 2934
            +AEKSF G+C RL++ + +LQ++  E ++ E     KDAL Q L  AI+ +  VFCSMN 
Sbjct: 214  EAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNS 273

Query: 2933 SKKEQNRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRV 2754
            ++KE N+D+ SRLL+ V     P+FS   +K++ V  S +D  A   +          +V
Sbjct: 274  NQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQV 333

Query: 2753 GEAPINTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGL 2574
             +       D   +++       KK  ++S+S  S   N    + + LK  + + + + +
Sbjct: 334  TDGMNRNILDSSVESSGRAFASAKKLSLDSISVESYNQN----NPDALKPGLSSSRGRFI 389

Query: 2573 VFPLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHP 2394
              PLLDLHKDHD DSLPSPT +     P +K           E    +   E ++ IMHP
Sbjct: 390  FGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKS----------ELVTAKVAHETQDSIMHP 439

Query: 2393 NETDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLN 2214
             ETDA+KA STYQQKFG  S    DKLPSPTPSE+  +   DI GEVSSSS     +  N
Sbjct: 440  YETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITAN 499

Query: 2213 TSIVGQSTVSSVADMDIISGQVHSSARTTSPMTPWP---------------TPVLKS--- 2088
               +G   VSS   MD    Q  +  R TS ++  P               T  + S   
Sbjct: 500  APALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSGPHLDSSVVQGLVVPRNTGAVNSRFN 559

Query: 2087 ----SSAKSRDPRLRLVNSDAGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVL 1923
                +SAKSRDPRLRL +SDAGS DLN+  LP  S  PKV+PLG ++SSRKQK+ +EP+L
Sbjct: 560  SILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLL 619

Query: 1922 YGPSSKRQRNNL---------HAVTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXX 1770
             GP +KRQRN L           V  +GGWLED  TV  Q+ N +  I            
Sbjct: 620  DGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQMMNRNQLI------------ 667

Query: 1769 XXXXXXXXVKGNGNEKFQVVGPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTL 1590
                     +  G +  ++    T                 T +    P+ ++      L
Sbjct: 668  ---------ENTGTDPKKLESKVTV----------------TGIGCDKPYVTVN-GNEHL 701

Query: 1589 PVTDPTNTASLHSLLKDIAGNPSIWMNIL-KMEQLKSVDSIKSMTLPPNSNSILGAVPSI 1413
            PV   + TASL SLLKDIA NP++WMNI  K+EQ KS D  K+  LPP SNSILG VP  
Sbjct: 702  PVVATSTTASLQSLLKDIAVNPAVWMNIFNKVEQQKSGDPAKNTVLPPTSNSILGVVPPA 761

Query: 1412 TVSPSNSPVPGHISAGLLKTPMQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQP 1233
            +V+P      G   AG L+ P Q    +ESGKVRMKPRDPRR LH  + Q+  S GS+Q 
Sbjct: 762  SVAPLKPSALGQKPAGALQVP-QTGPMDESGKVRMKPRDPRRILHANSFQRSGSSGSEQF 820

Query: 1232 KINPAVGQGMTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXX 1053
            K N            AQ QEDQ + K V S+ + PPDI++QFT NLKNIAD++       
Sbjct: 821  KTN------------AQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASS 868

Query: 1052 XXXXXXXXXXXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEH 873
                          QV   +M  K  VS+S +  +  G S  E  A   + +N WGDVEH
Sbjct: 869  MTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANG-SKPESAAGPPQSKNTWGDVEH 927

Query: 872  LFEGFDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEML 693
            LF+G+DDQQKAA           QK MF ARK           LNSAKFVEVDP+HDE+L
Sbjct: 928  LFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEIL 987

Query: 692  RKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAK 513
            RKKEEQDREK  RHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEMAK
Sbjct: 988  RKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK 1047

Query: 512  LLDPKGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKL 333
            +LDPKG LFAGRVIS+GDDGD  D ++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKL
Sbjct: 1048 VLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKL 1107

Query: 332  NLIAVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLD 153
            NLI VERY YFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIH++FF++++LD
Sbjct: 1108 NLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALD 1167

Query: 152  EADVRNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            E DVRNILASEQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAE FGAVC
Sbjct: 1168 EVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVC 1217


>gb|AAV92930.1| putative transcription regulator CPL1 [Solanum lycopersicum]
          Length = 1227

 Score =  902 bits (2331), Expect = 0.0
 Identities = 530/1079 (49%), Positives = 654/1079 (60%), Gaps = 47/1079 (4%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            +  KSF  +C +L++ +  L EL       + D L+QL   A++ + SVF SMN  +K+Q
Sbjct: 165  ETHKSFSMVCSKLQTSLLALGELALSQ--DKNDILIQLFMTALRTINSVFYSMNDHQKQQ 222

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N DILSRLL    +    L S  QLK++     S++ S VS N           V +   
Sbjct: 223  NTDILSRLLFNAKTQLPALLSSEQLKELDALILSINHSLVSSNTQDNDTVNGINVVQLLD 282

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              DS    +NAN   T + K  +  +S  SSGL E  VS E +K  + N K KGL FPLL
Sbjct: 283  MKDSHKSSENANQDFTSVNKYDLGDVSIKSSGLKEQSVSSESVKPGLDNSKAKGLSFPLL 342

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHD D+LPSPTR+  P  P  +     HG+VK + P+   +L++ N ++HP ETDA
Sbjct: 343  DLHKDHDEDTLPSPTRQIGPQFPATQT----HGMVKLDLPIFPASLDKGNSLLHPYETDA 398

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KA S+YQQKFGR+S+F+S+ LPSPTPSE+ D+G  D GGEV+S  +  N   LN S +G
Sbjct: 399  LKAVSSYQQKFGRSSLFVSENLPSPTPSEEDDSGKGDTGGEVTSFDVVHNASHLNESSMG 458

Query: 2198 QSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGSGDLN 2019
            Q  +SSV   +I+ GQ   + RT  P++  P P L+SS+AKSRDPRLRL  SD  +    
Sbjct: 459  QPILSSVPQTNILDGQGLGTTRTADPLSFLPNPSLRSSTAKSRDPRLRLATSDTVA---Q 515

Query: 2018 KSLLPMASTDPKVEP-LGMMSSRKQKTFDEPVLYGPSSKRQRN---------NLHAVTGT 1869
             ++LP+   D K+E  L M+ S+KQKT D      P  KRQR+         ++    G 
Sbjct: 516  NTILPIPDIDLKLEASLEMIVSKKQKTVDLSAFDAPLPKRQRSEQTDSIIVSDVRPSIGN 575

Query: 1868 GGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLP 1689
            GGWLEDRGT  + +   SS      S+                 N   K +         
Sbjct: 576  GGWLEDRGTAELPIT--SSNCATYNSD-----------------NDIRKLE--------Q 608

Query: 1688 VTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMN 1509
            VT  I ++P++              +       PVT  + + +LHSLLKDIA NPSIWMN
Sbjct: 609  VTATIATIPSV--------------IVNAAENFPVTGISTSTTLHSLLKDIAINPSIWMN 654

Query: 1508 ILKMEQLKSVDSIKSMTLPPNSN-SILGAVPS-ITVSPSNSPVPGHISAGLLKTPMQATS 1335
            I+K EQ KS D+ ++ T   +S+ SILGAVPS + V+P +S + G  S G+L+TP    S
Sbjct: 655  IIKTEQQKSADASRTNTAQASSSKSILGAVPSTVAVAPRSSAI-GQRSVGILQTPTHTAS 713

Query: 1334 T-----------------------------------EESGKVRMKPRDPRRFLHNGTSQK 1260
                                                +E   VRMKPRDPRR LH+    K
Sbjct: 714  AASSIYNLLMNDFIYSVIFTASIAQFPFYFFLTFSRDEVAIVRMKPRDPRRVLHSTAVLK 773

Query: 1259 GWSVGSDQPKINPAVGQGMTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIAD 1080
            G SVG DQ K   A      S+L  Q QEDQLDRK   +    PPDI  QFT NLKNIAD
Sbjct: 774  GGSVGLDQCKTGVAGTHATISNLSFQSQEDQLDRKSAVTLSTTPPDIACQFTKNLKNIAD 833

Query: 1079 IVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRP 900
            ++                       YQ + + KG VSE S   +  GL+S++ +    +P
Sbjct: 834  MISVSPSTSPSVASQTQTLCIQ--AYQSRSEVKGAVSEPSEWVNDAGLASEKGSPGSLQP 891

Query: 899  QNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVE 720
            Q +WGDVEHLFEG+ DQQ+A            QK MF                    FVE
Sbjct: 892  QISWGDVEHLFEGYSDQQRADIQRERTRRLEEQKKMFS-------------------FVE 932

Query: 719  VDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGN 540
            +DP+H+E+LRKKEEQDREKP+RHLFRFPHMGMWTKLRPGIWNFLEKAS L+ELHLYTMGN
Sbjct: 933  IDPVHEEILRKKEEQDREKPYRHLFRFPHMGMWTKLRPGIWNFLEKASNLFELHLYTMGN 992

Query: 539  KYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDS 360
            K YATEMAKLLDPKG+LFAGRVISRGDDGD FD ++RVPKSKDLEGVLGMESAVVIIDDS
Sbjct: 993  KLYATEMAKLLDPKGDLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDS 1052

Query: 359  VRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHE 180
            VRVWPHNKLNLI VERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLAS L VI+RIH+
Sbjct: 1053 VRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASCLGVIQRIHQ 1112

Query: 179  AFFAHQSLDEADVRNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
             FF H+S+DEADVRNILA+EQ KIL+GCRI+FSRVFPVGE +PH+HPLWQTAEQFGAVC
Sbjct: 1113 NFFTHRSIDEADVRNILATEQKKILAGCRIVFSRVFPVGEASPHLHPLWQTAEQFGAVC 1171


>ref|XP_010656786.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X2 [Vitis vinifera]
          Length = 1276

 Score =  902 bits (2330), Expect = 0.0
 Identities = 533/1072 (49%), Positives = 648/1072 (60%), Gaps = 40/1072 (3%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAE-----KDALVQLLFGAIQIVYSVFCSMNQ 2934
            +AEKSF G+C RL++ + +LQ++  E ++ E     KDAL Q L  AI+ +  VFCSMN 
Sbjct: 214  EAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNS 273

Query: 2933 SKKEQNRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRV 2754
            ++KE N+D+ SRLL+ V     P+FS   +K++ V  S +D  A   +          +V
Sbjct: 274  NQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQV 333

Query: 2753 GEAPINTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGL 2574
             +       D   +++       KK  ++S+S  S   N    + + LK  + + + + +
Sbjct: 334  TDGMNRNILDSSVESSGRAFASAKKLSLDSISVESYNQN----NPDALKPGLSSSRGRFI 389

Query: 2573 VFPLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHP 2394
              PLLDLHKDHD DSLPSPT +     P +K           E    +   E ++ IMHP
Sbjct: 390  FGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKS----------ELVTAKVAHETQDSIMHP 439

Query: 2393 NETDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLN 2214
             ETDA+KA STYQQKFG  S    DKLPSPTPSE+  +   DI GEVSSSS     +  N
Sbjct: 440  YETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITAN 499

Query: 2213 TSIVGQSTVSSVADMDIISGQVHSSARTTSPMTPWP---------------TPVLKS--- 2088
               +G   VSS   MD    Q  +  R TS ++  P               T  + S   
Sbjct: 500  APALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSGPHLDSSVVQGLVVPRNTGAVNSRFN 559

Query: 2087 ----SSAKSRDPRLRLVNSDAGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVL 1923
                +SAKSRDPRLRL +SDAGS DLN+  LP  S  PKV+PLG ++SSRKQK+ +EP+L
Sbjct: 560  SILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLL 619

Query: 1922 YGPSSKRQRNNL---------HAVTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXX 1770
             GP +KRQRN L           V  +GGWLED  TV  Q+ N +  I            
Sbjct: 620  DGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQMMNRNQLI------------ 667

Query: 1769 XXXXXXXXVKGNGNEKFQVVGPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTL 1590
                     +  G +  ++    T                 T +    P+ ++      L
Sbjct: 668  ---------ENTGTDPKKLESKVTV----------------TGIGCDKPYVTVN-GNEHL 701

Query: 1589 PVTDPTNTASLHSLLKDIAGNPSIWMNIL-KMEQLKSVDSIKSMTLPPNSNSILGAVPSI 1413
            PV   + TASL SLLKDIA NP++WMNI  K+EQ KS D  K+  LPP SNSILG VP  
Sbjct: 702  PVVATSTTASLQSLLKDIAVNPAVWMNIFNKVEQQKSGDPAKNTVLPPTSNSILGVVPPA 761

Query: 1412 TVSPSNSPVPGHISAGLLKTPMQATST--EESGKVRMKPRDPRRFLHNGTSQKGWSVGSD 1239
            +V+P      G   AG L+ P        +ESGKVRMKPRDPRR LH  + Q+  S GS+
Sbjct: 762  SVAPLKPSALGQKPAGALQVPQTGPMNPQDESGKVRMKPRDPRRILHANSFQRSGSSGSE 821

Query: 1238 QPKINPAVGQGMTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXX 1059
            Q K N            AQ QEDQ + K V S+ + PPDI++QFT NLKNIAD++     
Sbjct: 822  QFKTN------------AQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQA 869

Query: 1058 XXXXXXXXXXXXXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDV 879
                            QV   +M  K  VS+S +  +  G S  E  A   + +N WGDV
Sbjct: 870  SSMTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANG-SKPESAAGPPQSKNTWGDV 928

Query: 878  EHLFEGFDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDE 699
            EHLF+G+DDQQKAA           QK MF ARK           LNSAKFVEVDP+HDE
Sbjct: 929  EHLFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDE 988

Query: 698  MLRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEM 519
            +LRKKEEQDREK  RHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEM
Sbjct: 989  ILRKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEM 1048

Query: 518  AKLLDPKGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHN 339
            AK+LDPKG LFAGRVIS+GDDGD  D ++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHN
Sbjct: 1049 AKVLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHN 1108

Query: 338  KLNLIAVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQS 159
            KLNLI VERY YFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIH++FF++++
Sbjct: 1109 KLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRA 1168

Query: 158  LDEADVRNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            LDE DVRNILASEQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAE FGAVC
Sbjct: 1169 LDEVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVC 1220


>ref|XP_010656784.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X1 [Vitis vinifera]
          Length = 1285

 Score =  899 bits (2324), Expect = 0.0
 Identities = 536/1081 (49%), Positives = 651/1081 (60%), Gaps = 49/1081 (4%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAE-----KDALVQLLFGAIQIVYSVFCSMNQ 2934
            +AEKSF G+C RL++ + +LQ++  E ++ E     KDAL Q L  AI+ +  VFCSMN 
Sbjct: 214  EAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNS 273

Query: 2933 SKKEQNRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRV 2754
            ++KE N+D+ SRLL+ V     P+FS   +K++ V  S +D  A   +          +V
Sbjct: 274  NQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQV 333

Query: 2753 GEAPINTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGL 2574
             +       D   +++       KK  ++S+S  S   N    + + LK  + + + + +
Sbjct: 334  TDGMNRNILDSSVESSGRAFASAKKLSLDSISVESYNQN----NPDALKPGLSSSRGRFI 389

Query: 2573 VFPLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHP 2394
              PLLDLHKDHD DSLPSPT +     P +K           E    +   E ++ IMHP
Sbjct: 390  FGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKS----------ELVTAKVAHETQDSIMHP 439

Query: 2393 NETDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLN 2214
             ETDA+KA STYQQKFG  S    DKLPSPTPSE+  +   DI GEVSSSS     +  N
Sbjct: 440  YETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITAN 499

Query: 2213 TSIVGQSTVSSVADMDIISGQVHSSARTTSPMTPWP---------------TPVLKS--- 2088
               +G   VSS   MD    Q  +  R TS ++  P               T  + S   
Sbjct: 500  APALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSGPHLDSSVVQGLVVPRNTGAVNSRFN 559

Query: 2087 ----SSAKSRDPRLRLVNSDAGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVL 1923
                +SAKSRDPRLRL +SDAGS DLN+  LP  S  PKV+PLG ++SSRKQK+ +EP+L
Sbjct: 560  SILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLL 619

Query: 1922 YGPSSKRQRNNL---------HAVTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXX 1770
             GP +KRQRN L           V  +GGWLED  TV  Q+ N +  I            
Sbjct: 620  DGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQMMNRNQLI------------ 667

Query: 1769 XXXXXXXXVKGNGNEKFQVVGPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTL 1590
                     +  G +  ++    T                 T +    P+ ++      L
Sbjct: 668  ---------ENTGTDPKKLESKVTV----------------TGIGCDKPYVTVN-GNEHL 701

Query: 1589 PVTDPTNTASLHSLLKDIAGNPSIWMNIL-KMEQLKSVDSIKSMTLPPNSNSILGAVPSI 1413
            PV   + TASL SLLKDIA NP++WMNI  K+EQ KS D  K+  LPP SNSILG VP  
Sbjct: 702  PVVATSTTASLQSLLKDIAVNPAVWMNIFNKVEQQKSGDPAKNTVLPPTSNSILGVVPPA 761

Query: 1412 TVSPSNSPVPGHISAGLLKTP----MQATST-------EESGKVRMKPRDPRRFLHNGTS 1266
            +V+P      G   AG L+ P    M  TS        +ESGKVRMKPRDPRR LH  + 
Sbjct: 762  SVAPLKPSALGQKPAGALQVPQTGPMLVTSCNNAQNPQDESGKVRMKPRDPRRILHANSF 821

Query: 1265 QKGWSVGSDQPKINPAVGQGMTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNI 1086
            Q+  S GS+Q K N            AQ QEDQ + K V S+ + PPDI++QFT NLKNI
Sbjct: 822  QRSGSSGSEQFKTN------------AQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNI 869

Query: 1085 ADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALS 906
            AD++                     QV   +M  K  VS+S +  +  G S  E  A   
Sbjct: 870  ADLMSASQASSMTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANG-SKPESAAGPP 928

Query: 905  RPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKF 726
            + +N WGDVEHLF+G+DDQQKAA           QK MF ARK           LNSAKF
Sbjct: 929  QSKNTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKF 988

Query: 725  VEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTM 546
            VEVDP+HDE+LRKKEEQDREK  RHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTM
Sbjct: 989  VEVDPVHDEILRKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTM 1048

Query: 545  GNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIID 366
            GNK YATEMAK+LDPKG LFAGRVIS+GDDGD  D ++RVPKSKDLEGVLGMESAVVIID
Sbjct: 1049 GNKLYATEMAKVLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIID 1108

Query: 365  DSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERI 186
            DSVRVWPHNKLNLI VERY YFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERI
Sbjct: 1109 DSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERI 1168

Query: 185  HEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAV 6
            H++FF++++LDE DVRNILASEQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAE FGAV
Sbjct: 1169 HQSFFSNRALDEVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAV 1228

Query: 5    C 3
            C
Sbjct: 1229 C 1229


>ref|XP_012459417.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X1 [Gossypium raimondii]
            gi|763810289|gb|KJB77191.1| hypothetical protein
            B456_012G125200 [Gossypium raimondii]
          Length = 1272

 Score =  876 bits (2264), Expect = 0.0
 Identities = 526/1066 (49%), Positives = 646/1066 (60%), Gaps = 34/1066 (3%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            +AEKSF+ +C RL++ +++LQ LV E  +  KD L++L  GA+    S F ++N + KEQ
Sbjct: 210  EAEKSFEVVCSRLQNALESLQGLVFEYGVPTKDTLIELALGAVN---SAFVALNSNLKEQ 266

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N  ILSRLL+ V     PLF   ++K++ V   S++  A +++          +      
Sbjct: 267  NVSILSRLLSVVKGFDPPLFPLDKMKEIEVMLLSLNSPARAIDSEKEIKIVNKK------ 320

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              D D L +N  +  T   K     +S  S   N   +  E LK  V N ++KGL  PLL
Sbjct: 321  --DPDALAENVGHDLTVTNKL---PLSVDSEIHNMPNILTEALKPGVPNFRNKGLSLPLL 375

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHDADSLPSPTRET+P LP  +    G G+V+  + + +   + E   MHP ETDA
Sbjct: 376  DLHKDHDADSLPSPTRETTPCLPVLRPLTTGDGMVRSGFMMAKGLPDAERNKMHPYETDA 435

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KAFS+YQ+KFGR S F SD+LPSPTPSE+  +   D GGEVSSSS   N  P N  ++G
Sbjct: 436  LKAFSSYQRKFGRGSFFSSDRLPSPTPSEESGDEGCDTGGEVSSSSSIGNFKP-NLPVMG 494

Query: 2198 QSTVSSVADMDIISGQVHSSAR-TTSPMTPWPTP----VLKSSSAKSRDPRLRLVNSDAG 2034
               VSS   +D  S       + TT   TP        +L  +SAKSRDPRLR  NS+  
Sbjct: 495  HPIVSSAPHIDSASSTSSMQGQFTTQNATPVTVSSASNILSKASAKSRDPRLRFANSNVS 554

Query: 2033 SGDLNKSLLPMASTDPKVEPLGMMSSRKQKTFDEPVLYGPSSKRQRNNLH--------AV 1878
            + DLN+  L  AS  P V   G+M  RK+K+ +EPVL GP+ KRQ+N L         AV
Sbjct: 555  ALDLNQRPLHNASKVPPVS--GIMDPRKKKSTEEPVLDGPAPKRQKNELENFGVRDVQAV 612

Query: 1877 TGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCT 1698
            +G GGWLED      Q+ N +                                       
Sbjct: 613  SGNGGWLEDTDNCESQITNRNQ-------------------------------------- 634

Query: 1697 TLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSI 1518
            T+      +     G   S   +G   +   K   +P+T  +N  SL +LLKDIA NP++
Sbjct: 635  TMETLDSNSRKMEHGVTCSSTLSGKTNTTVNKNEQVPLTGMSNP-SLPALLKDIAVNPTM 693

Query: 1517 WMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITV--SPSNSPVPGHIS 1371
             +NILKM          Q K+ D +K+    P+SN +LG +P   V  SPS + VP   S
Sbjct: 694  LINILKMGQQQRLPSESQQKTPDPLKNTLYQPSSNPVLGVIPPANVIPSPSVNVVPSS-S 752

Query: 1370 AGLLKTP---MQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKIN---PAVG- 1212
            +G L  P   +Q    +ES K+RMKPRDPRR LH    QK  SVG DQ K N   PA   
Sbjct: 753  SGTLSKPAGNLQGPPLDESCKIRMKPRDPRRVLHGNVLQKSGSVGPDQLKTNGTSPASST 812

Query: 1211 QGMTSSLGAQMQ-EDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXX 1035
            QG   ++ AQ Q E+Q++ KP+    + PPDI +QFT +LKNIA ++             
Sbjct: 813  QGSKDNMNAQKQLENQIEAKPIQCQFVPPPDIAQQFTQSLKNIAGMMSGPQSFAGLPAVS 872

Query: 1034 XXXXXXXXQVYQ--GKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEG 861
                    QV        TKG  S S + ++G G + +         QNAWGDVEHLFE 
Sbjct: 873  QNLVSQPIQVKSETADKNTKG--SNSEDQQTGTGTAPEAGVTCPPPSQNAWGDVEHLFEK 930

Query: 860  FDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKE 681
            +DD+QKAA           QK MF ARK           LNSAKF+EVDP+H+E+LRKKE
Sbjct: 931  YDDRQKAAIQRERARRIEEQKKMFAARKLCLVLDLDHTLLNSAKFIEVDPVHEEILRKKE 990

Query: 680  EQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDP 501
            EQDREKP RHLFRF HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEMAK+LDP
Sbjct: 991  EQDREKPQRHLFRFHHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDP 1050

Query: 500  KGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIA 321
            KG LFAGRVISRGDDGD FD ++RVP+SKDLEGVLGMES+VVIIDDSVRVWPHNKLNLI 
Sbjct: 1051 KGVLFAGRVISRGDDGDPFDGDERVPRSKDLEGVLGMESSVVIIDDSVRVWPHNKLNLIV 1110

Query: 320  VERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADV 141
            VERY YFPCSRRQFGL GPSLLEIDHDERPEDGTLASSLAVIERIH+ FF+HQ+LD+ DV
Sbjct: 1111 VERYTYFPCSRRQFGLLGPSLLEIDHDERPEDGTLASSLAVIERIHQNFFSHQNLDDLDV 1170

Query: 140  RNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            RNILA+EQ KILSGCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1171 RNILATEQRKILSGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1216


>emb|CBI35661.3| unnamed protein product [Vitis vinifera]
          Length = 1184

 Score =  875 bits (2260), Expect = 0.0
 Identities = 529/1043 (50%), Positives = 625/1043 (59%), Gaps = 11/1043 (1%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAE-----KDALVQLLFGAIQIVYSVFCSMNQ 2934
            +AEKSF G+C RL++ + +LQ++  E ++ E     KDAL Q L  AI+ +  VFCSMN 
Sbjct: 211  EAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNS 270

Query: 2933 SKKEQNRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRV 2754
            ++KE N+D+ SRLL+ V     P+FS   +K++ V  S +D  A   +            
Sbjct: 271  NQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSFLDTPAAQSS------------ 318

Query: 2753 GEAPINTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKG- 2577
             EA    +   + D  N          I   S  SSG           ++     K +G 
Sbjct: 319  AEASDKVNDVQVTDGMNR--------NILDSSVESSG-----------RAFASAKKFRGR 359

Query: 2576 -LVFPLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIM 2400
             +  PLLDLHKDHD DSLPSPT +     P +K           E    +   E ++ IM
Sbjct: 360  FIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKS----------ELVTAKVAHETQDSIM 409

Query: 2399 HPNETDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVP 2220
            HP ETDA+KA STYQQKFG  S    DKLPSPTPSE+  +   DI GEVSSSS     + 
Sbjct: 410  HPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPIT 469

Query: 2219 LNTSIVGQSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSD 2040
             N   +G   VSS   MDI+ G V    R T  +      +L+ +SAKSRDPRLRL +SD
Sbjct: 470  ANAPALGHPIVSSAPQMDIVQGLV--VPRNTGAVNSRFNSILR-ASAKSRDPRLRLASSD 526

Query: 2039 AGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRNNLHAVTGTGG 1863
            AGS DLN+  LP  S  PKV+PLG ++SSRKQK+ +EP+L GP +KRQRN L   T    
Sbjct: 527  AGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGL---TSPAT 583

Query: 1862 WLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTLPVT 1683
             LE + TV        +GI                    V  NGNE   VV   TT    
Sbjct: 584  KLESKVTV--------TGI--------------GCDKPYVTVNGNEHLPVVATSTT---- 617

Query: 1682 GPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIWMNIL 1503
                                                   ASL SLLKDIA NP++WMNI 
Sbjct: 618  ---------------------------------------ASLQSLLKDIAVNPAVWMNIF 638

Query: 1502 -KMEQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGHISAGLLKTPMQA--TST 1332
             K+EQ KS D  K+  LPP SNSILG VP  +V+P      G   AG L+ P        
Sbjct: 639  NKVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLKPSALGQKPAGALQVPQTGPMNPQ 698

Query: 1331 EESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVGQGMTSSLGAQMQEDQLDRKP 1152
            +ESGKVRMKPRDPRR LH  + Q+  S GS+Q K N            AQ QEDQ + K 
Sbjct: 699  DESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKTN------------AQKQEDQTETKS 746

Query: 1151 VSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXXXXXXQVYQGKMKTKGVV 972
            V S+ + PPDI++QFT NLKNIAD++                     QV   +M  K  V
Sbjct: 747  VPSHSVNPPDISQQFTKNLKNIADLMSASQASSMTPTFPQILSSQSVQVNTDRMDVKATV 806

Query: 971  SESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQKAAXXXXXXXXXXXQKNM 792
            S+S +  +  G S  E  A   + +N WGDVEHLF+G+DDQQKAA           QK M
Sbjct: 807  SDSGDQLTANG-SKPESAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKM 865

Query: 791  FGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREKPHRHLFRFPHMGMWTKL 612
            F ARK           LNSAKFVEVDP+HDE+LRKKEEQDREK  RHLFRFPHMGMWTKL
Sbjct: 866  FSARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKSQRHLFRFPHMGMWTKL 925

Query: 611  RPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFAGRVISRGDDGDSFDSED 432
            RPGIWNFLEKASKLYELHLYTMGNK YATEMAK+LDPKG LFAGRVIS+GDDGD  D ++
Sbjct: 926  RPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISKGDDGDVLDGDE 985

Query: 431  RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIYFPCSRRQFGLPGPSLLE 252
            RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERY YFPCSRRQFGLPGPSLLE
Sbjct: 986  RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLE 1045

Query: 251  IDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILASEQHKILSGCRILFSRVF 72
            IDHDERPEDGTLASSLAVIERIH++FF++++LDE DVRNILASEQ KIL+GCRI+FSRVF
Sbjct: 1046 IDHDERPEDGTLASSLAVIERIHQSFFSNRALDEVDVRNILASEQRKILAGCRIVFSRVF 1105

Query: 71   PVGETNPHMHPLWQTAEQFGAVC 3
            PVGE NPH+HPLWQTAE FGAVC
Sbjct: 1106 PVGEANPHLHPLWQTAESFGAVC 1128


>ref|XP_010100046.1| RNA polymerase II C-terminal domain phosphatase-like 3 [Morus
            notabilis] gi|587892642|gb|EXB81217.1| RNA polymerase II
            C-terminal domain phosphatase-like 3 [Morus notabilis]
          Length = 1301

 Score =  872 bits (2253), Expect = 0.0
 Identities = 517/1068 (48%), Positives = 649/1068 (60%), Gaps = 36/1068 (3%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIA--EKDALVQLLFGAIQIVYSVFCSMNQSKK 2925
            +AEKSF+ +C RL+  +++L+ ++SE   +   KD ++Q+   AIQ+V SVFCSM+ ++K
Sbjct: 218  NAEKSFEEVCSRLQRTLESLRGVLSEKEFSFPTKDVVIQMSITAIQVVNSVFCSMSVNQK 277

Query: 2924 EQNRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEA 2745
            EQ ++ LSRL   V +   PLFS  Q K++ +  SS++   V  +         +++ E 
Sbjct: 278  EQKKETLSRLFCSVKNCGTPLFSPEQTKEIELMISSLNPLNVLPSSGASDKEKETQIIER 337

Query: 2744 PINTDSDVLFDNANNVSTCLKKSGIE-SMSTGSSGLNECRVSI-ECLKSLVGNVKHKGLV 2571
                DS++   NA N S  ++++ ++      +S ++   +++ E L+      K +GL+
Sbjct: 338  LHEMDSNLTNANAENAS--IERTSVKLPQDCVASVVHSNPITLPELLRPGTLAFKGRGLL 395

Query: 2570 FPLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPN 2391
             PLLDLHKDHDADSLPSPTRE     P  K   +  G++KP     +     E   +H  
Sbjct: 396  LPLLDLHKDHDADSLPSPTREAPSCFPVYKPLGVADGIIKPVSTTAKVAPGAEESRLHRY 455

Query: 2390 ETDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNT 2211
            ETDA+KA STYQQKFGR S  MSD+LPSPTPSE+ D  D DI  EVSSS    N+     
Sbjct: 456  ETDALKAVSTYQQKFGRGSFLMSDRLPSPTPSEECDEED-DINQEVSSSLTSGNLRTPAI 514

Query: 2210 SIVGQSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNSDAGS 2031
             I+  S V+S   +   + Q   +A+  +P+       +K+S A+SRDPRLR  NSDAG+
Sbjct: 515  PILRPSVVTSSVPVSSPTMQGPIAAKNAAPVGSGSNSTMKAS-ARSRDPRLRFANSDAGA 573

Query: 2030 GDLNKSLLPMASTDPKVEPLGMMSSRKQKTFDEPVLYGPSSKRQRN-------NLHAVTG 1872
             DLN+  L      PKVEP    SSRKQ+  +EP L GP+ KRQR+       ++   +G
Sbjct: 574  LDLNQRPLTAVHNGPKVEPGDPTSSRKQRIVEEPNLDGPALKRQRHAFVSAKIDVKTASG 633

Query: 1871 TGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCTTL 1692
             GGWLED GT G Q+ N +  +    ++                                
Sbjct: 634  VGGWLEDNGTTGPQIMNKNQLVENAEADPRKSIHL------------------------- 668

Query: 1691 PVTGPITSL-PTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSIW 1515
             V GPI +  P IG                    +PVT  +   +L ++LKDIA NP+I+
Sbjct: 669  -VNGPIMNNGPNIGKEQ-----------------VPVTGTSTPDALPAILKDIAVNPTIF 710

Query: 1514 MNILK---MEQLKSVD------SIKSMTLPPNSNSILGAVPSITVSPSNSPVPGHISAGL 1362
            M+IL     +QL + D      S K+ T PP +NSILGA P + V+PS +       +G+
Sbjct: 711  MDILNKLGQQQLLAADAQQKSDSSKNTTHPPGTNSILGAAPLVNVAPSKA-------SGI 763

Query: 1361 LKTPMQATST----------EESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVG 1212
            L+TP  +  T          +E GK+RMKPRDPRR LH    QK WS+G +Q K  P V 
Sbjct: 764  LQTPAVSLPTTSQVATASMQDELGKIRMKPRDPRRVLHGNMLQKSWSLGHEQFK--PIVS 821

Query: 1211 Q-----GMTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXX 1047
                  G   +L   +QE Q D+K V S L+  PDI RQFT NL+NIAD++         
Sbjct: 822  SVSCTPGNKDNLNGPVQEGQADKKQVPSQLVVQPDIARQFTKNLRNIADLMSVSQASTSP 881

Query: 1046 XXXXXXXXXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLF 867
                         V   +   K VV  S +  SG   + +   A  SR  NAWGDVEHLF
Sbjct: 882  ATVSQNLSSQPLPVKPDRGDVKAVVPNSEDQHSGTNSTPETTLAVPSRTPNAWGDVEHLF 941

Query: 866  EGFDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRK 687
            EG+DD+QKAA           QK MF A K           LNSAKFVEVD +HDE+LRK
Sbjct: 942  EGYDDEQKAAIQRERARRLEEQKKMFDAHKLCLVLDLDHTLLNSAKFVEVDSVHDEILRK 1001

Query: 686  KEEQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLL 507
            KEEQDREKP RHLFRFPHMGMWTKLRPG+WNFLEKASKLYELHLYTMGNK YATEMAK+L
Sbjct: 1002 KEEQDREKPQRHLFRFPHMGMWTKLRPGVWNFLEKASKLYELHLYTMGNKLYATEMAKVL 1061

Query: 506  DPKGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNL 327
            DP G LF+GRVISRGDDGD FD ++RVPKSKDLEGVLGMES+VVIIDDSVRVWPHNKLNL
Sbjct: 1062 DPMGTLFSGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESSVVIIDDSVRVWPHNKLNL 1121

Query: 326  IAVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEA 147
            I VERY YFPCSRRQFGLPGPSLLEIDHDERPE GTLASSLAVIE+IH+ FF+H SLDE 
Sbjct: 1122 IVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEQGTLASSLAVIEKIHQNFFSHHSLDEV 1181

Query: 146  DVRNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            DVRNILASEQ KIL+GCRI+FSRVFPV E NPH+HPLWQTAEQFGAVC
Sbjct: 1182 DVRNILASEQRKILAGCRIVFSRVFPVSEVNPHLHPLWQTAEQFGAVC 1229


>ref|XP_012088736.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Jatropha curcas] gi|643708360|gb|KDP23276.1|
            hypothetical protein JCGZ_23109 [Jatropha curcas]
          Length = 1283

 Score =  872 bits (2253), Expect = 0.0
 Identities = 534/1065 (50%), Positives = 650/1065 (61%), Gaps = 33/1065 (3%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            ++ KSF+  C  L + + +L+E++ ++ I  KD L+QL   A+Q V SVF SMN   +EQ
Sbjct: 238  ESNKSFETACSMLGNTLKSLREVIGKNNIPTKDNLLQLSSNAVQSVNSVFTSMNHKLREQ 297

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N+D  SR L+ V S    L S   +K++ V  SS+  S++S              GE   
Sbjct: 298  NKDSFSRFLSVVNSHVPSLLSPELIKEIEVMTSSL--SSIS--------------GEK-- 339

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMST--------GSSGLNECRVSIECLKSLVGNVKH 2583
              +S +  D  N       KS   S++T        GS   N+  +S+E  K  V   K 
Sbjct: 340  EKESLIFSDEGNKKDDMSAKSSGHSLTTAKKLSSFAGSFASNKPNMSLEAPKMGVSTFKS 399

Query: 2582 KGLVFPLLDLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVI 2403
            +  + PLLDLHKDHDADSLPSPTRE +PPLP  +               P+  L+ E+  
Sbjct: 400  RAGLLPLLDLHKDHDADSLPSPTREAAPPLPVRRV------------STPKVALDNEDTK 447

Query: 2402 MHPNETDAVKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIV 2223
            MHP ETDA+KA S+YQQKF R+S  ++D+LPSPTPSE+  NGD D+GGEVSSSS      
Sbjct: 448  MHPYETDALKAVSSYQQKFNRSSFAVNDRLPSPTPSEESGNGDGDVGGEVSSSSAVGQFR 507

Query: 2222 PLNTSIVGQSTVSSVADMDIISGQVHSSARTTSPMTPWPTPVLKSSSAKSRDPRLRLVNS 2043
            P N    GQS VS+    +  + Q    A+   P++   +  +K+S AKSRDPRLR VNS
Sbjct: 508  PANPPNSGQSIVSTSPHPESSNMQGVVPAKNAGPVSSGSSLTVKAS-AKSRDPRLRFVNS 566

Query: 2042 DAGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRN--------- 1893
            DA + D N  +LP+ +  PKVE LG  M+ +KQK+ D+ VL GPS KRQRN         
Sbjct: 567  DANALDQNH-VLPLVNNTPKVEYLGGPMNLKKQKSVDDSVLDGPSLKRQRNVLEHSGGVG 625

Query: 1892 NLHAVTGTGGWLEDRGTVGMQVKNGSSGIVL---RRSEDXXXXXXXXXXXXXVKGNGNEK 1722
            N+  +  +GGWLED   V  Q  N +  +     RR ++             V  +GNE+
Sbjct: 626  NVKTMIASGGWLEDTDMVRPQTMNRNQLVENSDPRRMDNGVACPSTVSGISSVSISGNEQ 685

Query: 1721 FQVVGPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLK 1542
              V+G       TG IT                      +G  + +T  T+ ASL  LLK
Sbjct: 686  KPVIG-------TGAIT----------------------EGEQIQMTG-TSEASLPDLLK 715

Query: 1541 DIAGNPSIWMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSP 1389
            +IA NP++ +N+LKM          Q K  D  K+   P N+N+ILG+VP + V P    
Sbjct: 716  NIAVNPTMLLNLLKMGQQQRSAIDAQQKPSDPAKTSKHPLNANAILGSVPVVNVVPPQPS 775

Query: 1388 VPGHISAGLLKTPMQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKIN---PA 1218
            V     AG L+ P QA + EE GK+RMKPRDPRR LH  T QK  ++G +Q K N   P 
Sbjct: 776  VMPR-PAGTLQVPPQA-AVEELGKIRMKPRDPRRVLHYQTLQKNGNMGYEQFKTNLTSPP 833

Query: 1217 VGQGMTSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXX 1038
              QG   +   Q Q+ Q + +PV    +  PDI+  FT +LKNIADIV            
Sbjct: 834  TDQGTKDNQIVQKQDGQAETEPVPLQSLVVPDISLPFTKSLKNIADIVSVSHASTSPTVV 893

Query: 1037 XXXXXXXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGF 858
                             T+ +VS S    +GIG S+  V     RPQ+AWGDVEHLFEG+
Sbjct: 894  SQNL---------ASQPTRTIVSNSEQ-PAGIG-SAPCVAPVGPRPQDAWGDVEHLFEGY 942

Query: 857  DDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEE 678
             DQQKAA           QK MF ARK           LNSAKFVEVDP+HDE+LRKKEE
Sbjct: 943  SDQQKAAIQRERARRIEEQKKMFAARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEE 1002

Query: 677  QDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPK 498
            QDREKP+RHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEMAK+LDP 
Sbjct: 1003 QDREKPYRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPT 1062

Query: 497  GELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAV 318
            G LF GRVISRGDD DSFDS++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI V
Sbjct: 1063 GVLFNGRVISRGDDTDSFDSDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVV 1122

Query: 317  ERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVR 138
            ERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLA SLAVIE+IH+ FF H SLD+ADVR
Sbjct: 1123 ERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLACSLAVIEKIHQHFFTHPSLDDADVR 1182

Query: 137  NILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            NILASEQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1183 NILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1227


>gb|KDO83167.1| hypothetical protein CISIN_1g000897mg [Citrus sinensis]
          Length = 1208

 Score =  870 bits (2248), Expect = 0.0
 Identities = 523/1060 (49%), Positives = 645/1060 (60%), Gaps = 32/1060 (3%)
 Frame = -3

Query: 3086 SFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQNRDI 2907
            SF+G+C +L   +++L+ELV+E+ +  KDAL+QL F A+Q V+SVFCSMN   KEQN++I
Sbjct: 192  SFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEI 251

Query: 2906 LSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPINTDS 2727
            LSRLL+ + S + PLFS  Q+K+M    SS+   A             +         DS
Sbjct: 252  LSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVN-------GKDS 304

Query: 2726 DVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLLDLHK 2547
            +++ +NA N     +K  +   S   +        +E  K      + +G++ PLLD HK
Sbjct: 305  NIVTENAVNDLNFKEKVPLPVDSLMQNK------PLEASKPGPPGYRSRGVLLPLLDPHK 358

Query: 2546 DHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPN-ETDAVKA 2370
             HD DSLPSPTRET+P +P  +  V+G G+VK  W    +      V   P+ ETDA++A
Sbjct: 359  VHDVDSLPSPTRETTPSVPVQRALVVGDGMVK-SWAAAAKLSHNAEVHKTPHYETDALRA 417

Query: 2369 FSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVGQST 2190
            FS+YQQKFGRNS FM+ +LPSPTPSE+  +GD D GGE+SS++      P+N   +GQ  
Sbjct: 418  FSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQP 477

Query: 2189 VSSVA-----DMDIISGQVHSSARTTSPMTPWPTPVLKSSSA-----KSRDPRLRLVNSD 2040
            VSS        MDI S Q  ++A  ++P +    PV+K +       KSRDPRLR  +S+
Sbjct: 478  VSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSN 537

Query: 2039 AGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRNNLHA------ 1881
            A +  LN    P+    PKVEP+G +MSSRKQKT +EPVL GP+ KRQRN          
Sbjct: 538  ALN--LNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRD 595

Query: 1880 ---VTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVV 1710
               + G+GGWLED      Q+ N +  +    S                  NG       
Sbjct: 596  EKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLD------------NG------- 636

Query: 1709 GPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAG 1530
                    T PITS    G P  + +              P T P+ T SL +LLKDIA 
Sbjct: 637  -------ATSPITS----GTPNVVVSGNE---------PAPATTPSTTVSLPALLKDIAV 676

Query: 1529 NPSIWMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGH 1377
            NP++ +NILKM          Q KS DS  +   PP  +SI    P ++V+ S       
Sbjct: 677  NPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSI----PPVSVTCS------- 725

Query: 1376 ISAGLLKTPMQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVG--QGM 1203
            I +G+L  PM     +E GKVRMKPRDPRR LH    Q+  S+G +     P+    QG 
Sbjct: 726  IPSGILSKPM-----DELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGS 780

Query: 1202 TSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXX 1023
              +L  Q Q    + KPV S  +  PDIT+QFT NLK+IAD +                 
Sbjct: 781  KENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSP 840

Query: 1022 XXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQK 843
                Q+  G    K VV+   + ++G G S  E     + PQ+AWGDVEHLFEG+DDQQK
Sbjct: 841  IQPGQIKSGA-DMKAVVTNHDDKQTGTG-SGPEAGPVGAHPQSAWGDVEHLFEGYDDQQK 898

Query: 842  AAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREK 663
            AA           QK MF ARK           LNSAKF EVDP+HDE+LRKKEEQDREK
Sbjct: 899  AAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREK 958

Query: 662  PHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFA 483
            PHRHLFRFPHMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNK YATEMAK+LDPKG LFA
Sbjct: 959  PHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFA 1018

Query: 482  GRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIY 303
            GRVISRGDDGD FD ++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERY Y
Sbjct: 1019 GRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTY 1078

Query: 302  FPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILAS 123
            FPCSRRQFGL GPSLLEIDHDER EDGTLASSL VIER+H+ FF+HQSLD+ DVRNILA+
Sbjct: 1079 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138

Query: 122  EQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            EQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1139 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1178


>gb|KDO83165.1| hypothetical protein CISIN_1g000897mg [Citrus sinensis]
          Length = 1234

 Score =  870 bits (2248), Expect = 0.0
 Identities = 523/1060 (49%), Positives = 645/1060 (60%), Gaps = 32/1060 (3%)
 Frame = -3

Query: 3086 SFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQNRDI 2907
            SF+G+C +L   +++L+ELV+E+ +  KDAL+QL F A+Q V+SVFCSMN   KEQN++I
Sbjct: 192  SFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEI 251

Query: 2906 LSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPINTDS 2727
            LSRLL+ + S + PLFS  Q+K+M    SS+   A             +         DS
Sbjct: 252  LSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVN-------GKDS 304

Query: 2726 DVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLLDLHK 2547
            +++ +NA N     +K  +   S   +        +E  K      + +G++ PLLD HK
Sbjct: 305  NIVTENAVNDLNFKEKVPLPVDSLMQNK------PLEASKPGPPGYRSRGVLLPLLDPHK 358

Query: 2546 DHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPN-ETDAVKA 2370
             HD DSLPSPTRET+P +P  +  V+G G+VK  W    +      V   P+ ETDA++A
Sbjct: 359  VHDVDSLPSPTRETTPSVPVQRALVVGDGMVK-SWAAAAKLSHNAEVHKTPHYETDALRA 417

Query: 2369 FSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVGQST 2190
            FS+YQQKFGRNS FM+ +LPSPTPSE+  +GD D GGE+SS++      P+N   +GQ  
Sbjct: 418  FSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQP 477

Query: 2189 VSSVA-----DMDIISGQVHSSARTTSPMTPWPTPVLKSSSA-----KSRDPRLRLVNSD 2040
            VSS        MDI S Q  ++A  ++P +    PV+K +       KSRDPRLR  +S+
Sbjct: 478  VSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSN 537

Query: 2039 AGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRNNLHA------ 1881
            A +  LN    P+    PKVEP+G +MSSRKQKT +EPVL GP+ KRQRN          
Sbjct: 538  ALN--LNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRD 595

Query: 1880 ---VTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVV 1710
               + G+GGWLED      Q+ N +  +    S                  NG       
Sbjct: 596  EKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLD------------NG------- 636

Query: 1709 GPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAG 1530
                    T PITS    G P  + +              P T P+ T SL +LLKDIA 
Sbjct: 637  -------ATSPITS----GTPNVVVSGNE---------PAPATTPSTTVSLPALLKDIAV 676

Query: 1529 NPSIWMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGH 1377
            NP++ +NILKM          Q KS DS  +   PP  +SI    P ++V+ S       
Sbjct: 677  NPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSI----PPVSVTCS------- 725

Query: 1376 ISAGLLKTPMQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVG--QGM 1203
            I +G+L  PM     +E GKVRMKPRDPRR LH    Q+  S+G +     P+    QG 
Sbjct: 726  IPSGILSKPM-----DELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGS 780

Query: 1202 TSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXX 1023
              +L  Q Q    + KPV S  +  PDIT+QFT NLK+IAD +                 
Sbjct: 781  KENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSP 840

Query: 1022 XXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQK 843
                Q+  G    K VV+   + ++G G S  E     + PQ+AWGDVEHLFEG+DDQQK
Sbjct: 841  IQPGQIKSGA-DMKAVVTNHDDKQTGTG-SGPEAGPVGAHPQSAWGDVEHLFEGYDDQQK 898

Query: 842  AAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREK 663
            AA           QK MF ARK           LNSAKF EVDP+HDE+LRKKEEQDREK
Sbjct: 899  AAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREK 958

Query: 662  PHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFA 483
            PHRHLFRFPHMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNK YATEMAK+LDPKG LFA
Sbjct: 959  PHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFA 1018

Query: 482  GRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIY 303
            GRVISRGDDGD FD ++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERY Y
Sbjct: 1019 GRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTY 1078

Query: 302  FPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILAS 123
            FPCSRRQFGL GPSLLEIDHDER EDGTLASSL VIER+H+ FF+HQSLD+ DVRNILA+
Sbjct: 1079 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138

Query: 122  EQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            EQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1139 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1178


>ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|568858958|ref|XP_006483010.1| PREDICTED: RNA
            polymerase II C-terminal domain phosphatase-like 3-like
            [Citrus sinensis] gi|557541056|gb|ESR52100.1|
            hypothetical protein CICLE_v10030535mg [Citrus
            clementina]
          Length = 1234

 Score =  870 bits (2247), Expect = 0.0
 Identities = 523/1060 (49%), Positives = 645/1060 (60%), Gaps = 32/1060 (3%)
 Frame = -3

Query: 3086 SFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQNRDI 2907
            SF+G+C +L   +++L+ELV+E+ +  KDAL+QL F A+Q V+SVFCSMN   KEQN++I
Sbjct: 192  SFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEI 251

Query: 2906 LSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPINTDS 2727
            LSRLL+ + S + PLFS  Q+K+M    SS+   A             +         DS
Sbjct: 252  LSRLLSVIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVN-------GKDS 304

Query: 2726 DVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLLDLHK 2547
            +++ +NA N     +K  +   S   +        +E  K      + +G++ PLLD HK
Sbjct: 305  NIVTENAVNDLNFKEKVPLPVDSLMQNK------PLEASKPGPPGYRSRGVLLPLLDPHK 358

Query: 2546 DHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPN-ETDAVKA 2370
             HD DSLPSPTRET+P +P  +  V+G G+VK  W    +      V   P+ ETDA++A
Sbjct: 359  VHDVDSLPSPTRETTPSVPVQRALVVGDGVVK-SWAAAAKLSHNAEVHKTPHYETDALRA 417

Query: 2369 FSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVGQST 2190
            FS+YQQKFGRNS FM+ +LPSPTPSE+  +GD D GGE+SS++      P+N   +GQ  
Sbjct: 418  FSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQP 477

Query: 2189 VSSVA-----DMDIISGQVHSSARTTSPMTPWPTPVLKSSSA-----KSRDPRLRLVNSD 2040
            VSS        MDI S Q  ++A  ++P +    PV+K +       KSRDPRLR  +S+
Sbjct: 478  VSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSN 537

Query: 2039 AGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRNNLHA------ 1881
            A +  LN    P+    PKVEP+G +MSSRKQKT +EPVL GP+ KRQRN          
Sbjct: 538  ALN--LNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRD 595

Query: 1880 ---VTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVV 1710
               + G+GGWLED      Q+ N +  +    S                  NG       
Sbjct: 596  EKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLD------------NG------- 636

Query: 1709 GPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAG 1530
                    T PITS    G P  + +              P T P+ T SL +LLKDIA 
Sbjct: 637  -------ATSPITS----GTPNVVVSGNE---------PAPATTPSTTVSLPALLKDIAV 676

Query: 1529 NPSIWMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGH 1377
            NP++ +NILKM          Q KS DS  +   PP  +SI    P ++V+ S       
Sbjct: 677  NPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSI----PPVSVTCS------- 725

Query: 1376 ISAGLLKTPMQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVG--QGM 1203
            I +G+L  PM     +E GKVRMKPRDPRR LH    Q+  S+G +     P+    QG 
Sbjct: 726  IPSGILSKPM-----DELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGS 780

Query: 1202 TSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXX 1023
              +L  Q Q    + KPV S  +  PDIT+QFT NLK+IAD +                 
Sbjct: 781  KENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSP 840

Query: 1022 XXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQK 843
                Q+  G    K VV+   + ++G G S  E     + PQ+AWGDVEHLFEG+DDQQK
Sbjct: 841  IQPGQIKSGA-DMKAVVTNHDDKQTGTG-SGPEAGPVGAHPQSAWGDVEHLFEGYDDQQK 898

Query: 842  AAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREK 663
            AA           QK MF ARK           LNSAKF EVDP+HDE+LRKKEEQDREK
Sbjct: 899  AAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREK 958

Query: 662  PHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFA 483
            PHRHLFRFPHMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNK YATEMAK+LDPKG LFA
Sbjct: 959  PHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFA 1018

Query: 482  GRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIY 303
            GRVISRGDDGD FD ++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERY Y
Sbjct: 1019 GRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTY 1078

Query: 302  FPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILAS 123
            FPCSRRQFGL GPSLLEIDHDER EDGTLASSL VIER+H+ FF+HQSLD+ DVRNILA+
Sbjct: 1079 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138

Query: 122  EQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            EQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1139 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1178


>ref|XP_006438858.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|557541054|gb|ESR52098.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
          Length = 1208

 Score =  870 bits (2247), Expect = 0.0
 Identities = 523/1060 (49%), Positives = 645/1060 (60%), Gaps = 32/1060 (3%)
 Frame = -3

Query: 3086 SFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQNRDI 2907
            SF+G+C +L   +++L+ELV+E+ +  KDAL+QL F A+Q V+SVFCSMN   KEQN++I
Sbjct: 192  SFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEI 251

Query: 2906 LSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPINTDS 2727
            LSRLL+ + S + PLFS  Q+K+M    SS+   A             +         DS
Sbjct: 252  LSRLLSVIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVN-------GKDS 304

Query: 2726 DVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLLDLHK 2547
            +++ +NA N     +K  +   S   +        +E  K      + +G++ PLLD HK
Sbjct: 305  NIVTENAVNDLNFKEKVPLPVDSLMQNK------PLEASKPGPPGYRSRGVLLPLLDPHK 358

Query: 2546 DHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPN-ETDAVKA 2370
             HD DSLPSPTRET+P +P  +  V+G G+VK  W    +      V   P+ ETDA++A
Sbjct: 359  VHDVDSLPSPTRETTPSVPVQRALVVGDGVVK-SWAAAAKLSHNAEVHKTPHYETDALRA 417

Query: 2369 FSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVGQST 2190
            FS+YQQKFGRNS FM+ +LPSPTPSE+  +GD D GGE+SS++      P+N   +GQ  
Sbjct: 418  FSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQP 477

Query: 2189 VSSVA-----DMDIISGQVHSSARTTSPMTPWPTPVLKSSSA-----KSRDPRLRLVNSD 2040
            VSS        MDI S Q  ++A  ++P +    PV+K +       KSRDPRLR  +S+
Sbjct: 478  VSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSN 537

Query: 2039 AGSGDLNKSLLPMASTDPKVEPLG-MMSSRKQKTFDEPVLYGPSSKRQRNNLHA------ 1881
            A +  LN    P+    PKVEP+G +MSSRKQKT +EPVL GP+ KRQRN          
Sbjct: 538  ALN--LNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRD 595

Query: 1880 ---VTGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVV 1710
               + G+GGWLED      Q+ N +  +    S                  NG       
Sbjct: 596  EKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLD------------NG------- 636

Query: 1709 GPCTTLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAG 1530
                    T PITS    G P  + +              P T P+ T SL +LLKDIA 
Sbjct: 637  -------ATSPITS----GTPNVVVSGNE---------PAPATTPSTTVSLPALLKDIAV 676

Query: 1529 NPSIWMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITVSPSNSPVPGH 1377
            NP++ +NILKM          Q KS DS  +   PP  +SI    P ++V+ S       
Sbjct: 677  NPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSI----PPVSVTCS------- 725

Query: 1376 ISAGLLKTPMQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKINPAVG--QGM 1203
            I +G+L  PM     +E GKVRMKPRDPRR LH    Q+  S+G +     P+    QG 
Sbjct: 726  IPSGILSKPM-----DELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGS 780

Query: 1202 TSSLGAQMQEDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXXXXXX 1023
              +L  Q Q    + KPV S  +  PDIT+QFT NLK+IAD +                 
Sbjct: 781  KENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSP 840

Query: 1022 XXXXQVYQGKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEGFDDQQK 843
                Q+  G    K VV+   + ++G G S  E     + PQ+AWGDVEHLFEG+DDQQK
Sbjct: 841  IQPGQIKSGA-DMKAVVTNHDDKQTGTG-SGPEAGPVGAHPQSAWGDVEHLFEGYDDQQK 898

Query: 842  AAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKEEQDREK 663
            AA           QK MF ARK           LNSAKF EVDP+HDE+LRKKEEQDREK
Sbjct: 899  AAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREK 958

Query: 662  PHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDPKGELFA 483
            PHRHLFRFPHMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNK YATEMAK+LDPKG LFA
Sbjct: 959  PHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFA 1018

Query: 482  GRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIAVERYIY 303
            GRVISRGDDGD FD ++RVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLI VERY Y
Sbjct: 1019 GRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTY 1078

Query: 302  FPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADVRNILAS 123
            FPCSRRQFGL GPSLLEIDHDER EDGTLASSL VIER+H+ FF+HQSLD+ DVRNILA+
Sbjct: 1079 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138

Query: 122  EQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            EQ KIL+GCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1139 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1178


>ref|XP_012459418.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X2 [Gossypium raimondii]
          Length = 1251

 Score =  867 bits (2240), Expect = 0.0
 Identities = 522/1066 (48%), Positives = 640/1066 (60%), Gaps = 34/1066 (3%)
 Frame = -3

Query: 3098 DAEKSFDGLCLRLRSLVDNLQELVSESLIAEKDALVQLLFGAIQIVYSVFCSMNQSKKEQ 2919
            +AEKSF+ +C RL++ +++LQ LV E  +  KD L++L  GA+    S F ++N + KEQ
Sbjct: 210  EAEKSFEVVCSRLQNALESLQGLVFEYGVPTKDTLIELALGAVN---SAFVALNSNLKEQ 266

Query: 2918 NRDILSRLLAYVMSLKVPLFSFYQLKKMGVFRSSMDFSAVSLNLXXXXXXXXSRVGEAPI 2739
            N  ILSRLL+ V     PLF   ++K++ V   S++  A +++          +      
Sbjct: 267  NVSILSRLLSVVKGFDPPLFPLDKMKEIEVMLLSLNSPARAIDSEKEIKIVNKK------ 320

Query: 2738 NTDSDVLFDNANNVSTCLKKSGIESMSTGSSGLNECRVSIECLKSLVGNVKHKGLVFPLL 2559
              D D L +N  +  T                        E LK  V N ++KGL  PLL
Sbjct: 321  --DPDALAENVGHDLT------------------------EALKPGVPNFRNKGLSLPLL 354

Query: 2558 DLHKDHDADSLPSPTRETSPPLPFDKGFVLGHGLVKPEWPVPRQTLERENVIMHPNETDA 2379
            DLHKDHDADSLPSPTRET+P LP  +    G G+V+  + + +   + E   MHP ETDA
Sbjct: 355  DLHKDHDADSLPSPTRETTPCLPVLRPLTTGDGMVRSGFMMAKGLPDAERNKMHPYETDA 414

Query: 2378 VKAFSTYQQKFGRNSIFMSDKLPSPTPSEDGDNGDVDIGGEVSSSSIPRNIVPLNTSIVG 2199
            +KAFS+YQ+KFGR S F SD+LPSPTPSE+  +   D GGEVSSSS   N  P N  ++G
Sbjct: 415  LKAFSSYQRKFGRGSFFSSDRLPSPTPSEESGDEGCDTGGEVSSSSSIGNFKP-NLPVMG 473

Query: 2198 QSTVSSVADMDIISGQVHSSAR-TTSPMTPWPTP----VLKSSSAKSRDPRLRLVNSDAG 2034
               VSS   +D  S       + TT   TP        +L  +SAKSRDPRLR  NS+  
Sbjct: 474  HPIVSSAPHIDSASSTSSMQGQFTTQNATPVTVSSASNILSKASAKSRDPRLRFANSNVS 533

Query: 2033 SGDLNKSLLPMASTDPKVEPLGMMSSRKQKTFDEPVLYGPSSKRQRNNLH--------AV 1878
            + DLN+  L  AS  P V   G+M  RK+K+ +EPVL GP+ KRQ+N L         AV
Sbjct: 534  ALDLNQRPLHNASKVPPVS--GIMDPRKKKSTEEPVLDGPAPKRQKNELENFGVRDVQAV 591

Query: 1877 TGTGGWLEDRGTVGMQVKNGSSGIVLRRSEDXXXXXXXXXXXXXVKGNGNEKFQVVGPCT 1698
            +G GGWLED      Q+ N +                                       
Sbjct: 592  SGNGGWLEDTDNCESQITNRNQ-------------------------------------- 613

Query: 1697 TLPVTGPITSLPTIGPPTSLAATGPFTSLPVKGPTLPVTDPTNTASLHSLLKDIAGNPSI 1518
            T+      +     G   S   +G   +   K   +P+T  +N  SL +LLKDIA NP++
Sbjct: 614  TMETLDSNSRKMEHGVTCSSTLSGKTNTTVNKNEQVPLTGMSNP-SLPALLKDIAVNPTM 672

Query: 1517 WMNILKM---------EQLKSVDSIKSMTLPPNSNSILGAVPSITV--SPSNSPVPGHIS 1371
             +NILKM          Q K+ D +K+    P+SN +LG +P   V  SPS + VP   S
Sbjct: 673  LINILKMGQQQRLPSESQQKTPDPLKNTLYQPSSNPVLGVIPPANVIPSPSVNVVPSS-S 731

Query: 1370 AGLLKTP---MQATSTEESGKVRMKPRDPRRFLHNGTSQKGWSVGSDQPKIN---PAVG- 1212
            +G L  P   +Q    +ES K+RMKPRDPRR LH    QK  SVG DQ K N   PA   
Sbjct: 732  SGTLSKPAGNLQGPPLDESCKIRMKPRDPRRVLHGNVLQKSGSVGPDQLKTNGTSPASST 791

Query: 1211 QGMTSSLGAQMQ-EDQLDRKPVSSNLIAPPDITRQFTTNLKNIADIVXXXXXXXXXXXXX 1035
            QG   ++ AQ Q E+Q++ KP+    + PPDI +QFT +LKNIA ++             
Sbjct: 792  QGSKDNMNAQKQLENQIEAKPIQCQFVPPPDIAQQFTQSLKNIAGMMSGPQSFAGLPAVS 851

Query: 1034 XXXXXXXXQVYQ--GKMKTKGVVSESSNLRSGIGLSSQEVTAALSRPQNAWGDVEHLFEG 861
                    QV        TKG  S S + ++G G + +         QNAWGDVEHLFE 
Sbjct: 852  QNLVSQPIQVKSETADKNTKG--SNSEDQQTGTGTAPEAGVTCPPPSQNAWGDVEHLFEK 909

Query: 860  FDDQQKAAXXXXXXXXXXXQKNMFGARKXXXXXXXXXXXLNSAKFVEVDPLHDEMLRKKE 681
            +DD+QKAA           QK MF ARK           LNSAKF+EVDP+H+E+LRKKE
Sbjct: 910  YDDRQKAAIQRERARRIEEQKKMFAARKLCLVLDLDHTLLNSAKFIEVDPVHEEILRKKE 969

Query: 680  EQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKYYATEMAKLLDP 501
            EQDREKP RHLFRF HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK YATEMAK+LDP
Sbjct: 970  EQDREKPQRHLFRFHHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDP 1029

Query: 500  KGELFAGRVISRGDDGDSFDSEDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIA 321
            KG LFAGRVISRGDDGD FD ++RVP+SKDLEGVLGMES+VVIIDDSVRVWPHNKLNLI 
Sbjct: 1030 KGVLFAGRVISRGDDGDPFDGDERVPRSKDLEGVLGMESSVVIIDDSVRVWPHNKLNLIV 1089

Query: 320  VERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHEAFFAHQSLDEADV 141
            VERY YFPCSRRQFGL GPSLLEIDHDERPEDGTLASSLAVIERIH+ FF+HQ+LD+ DV
Sbjct: 1090 VERYTYFPCSRRQFGLLGPSLLEIDHDERPEDGTLASSLAVIERIHQNFFSHQNLDDLDV 1149

Query: 140  RNILASEQHKILSGCRILFSRVFPVGETNPHMHPLWQTAEQFGAVC 3
            RNILA+EQ KILSGCRI+FSRVFPVGE NPH+HPLWQTAEQFGAVC
Sbjct: 1150 RNILATEQRKILSGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC 1195