BLASTX nr result

ID: Forsythia23_contig00012962 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00012962
         (329 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP11022.1| unnamed protein product [Coffea canephora]             61   3e-07
ref|XP_011075302.1| PREDICTED: photosystem II stability/assembly...    58   2e-06
ref|XP_011075300.1| PREDICTED: photosystem II stability/assembly...    58   2e-06
ref|XP_009613611.1| PREDICTED: photosystem II stability/assembly...    57   6e-06

>emb|CDP11022.1| unnamed protein product [Coffea canephora]
          Length = 411

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = -2

Query: 136 SAVAISLSPFVGGGKNGSALAAEEPLSEWERVFLPIDPGVVLLDI 2
           +A A++ S F+ GG N +  AAEE LSEWERV+LPIDPGVVLLDI
Sbjct: 65  AAAAVTASGFLIGGGNKAFAAAEEGLSEWERVYLPIDPGVVLLDI 109


>ref|XP_011075302.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic isoform X2 [Sesamum indicum]
          Length = 346

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/45 (66%), Positives = 34/45 (75%)
 Frame = -2

Query: 136 SAVAISLSPFVGGGKNGSALAAEEPLSEWERVFLPIDPGVVLLDI 2
           +A A+SLSP         ALAA+EPLSEWER +LPIDPGVVLLDI
Sbjct: 62  AAAAVSLSPL-----GSKALAADEPLSEWERGYLPIDPGVVLLDI 101


>ref|XP_011075300.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic isoform X1 [Sesamum indicum]
           gi|747057952|ref|XP_011075301.1| PREDICTED: photosystem
           II stability/assembly factor HCF136, chloroplastic
           isoform X1 [Sesamum indicum]
          Length = 403

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/45 (66%), Positives = 34/45 (75%)
 Frame = -2

Query: 136 SAVAISLSPFVGGGKNGSALAAEEPLSEWERVFLPIDPGVVLLDI 2
           +A A+SLSP         ALAA+EPLSEWER +LPIDPGVVLLDI
Sbjct: 62  AAAAVSLSPL-----GSKALAADEPLSEWERGYLPIDPGVVLLDI 101


>ref|XP_009613611.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic [Nicotiana tomentosiformis]
           gi|697119327|ref|XP_009613612.1| PREDICTED: photosystem
           II stability/assembly factor HCF136, chloroplastic
           [Nicotiana tomentosiformis]
          Length = 399

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = -2

Query: 136 SAVAISLSPFVGGGKNGSALAAEE-PLSEWERVFLPIDPGVVLLDI 2
           +A AI+L P +G G +     A+E PLSEWERV+LPIDPGVVLLDI
Sbjct: 52  TAAAIALPPLLGAGISPIPAKADEVPLSEWERVYLPIDPGVVLLDI 97


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