BLASTX nr result

ID: Forsythia23_contig00012542 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00012542
         (300 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010312166.1| PREDICTED: transcription elongation factor S...    56   8e-06
ref|XP_006339249.1| PREDICTED: transcription elongation factor S...    56   8e-06
ref|XP_006339248.1| PREDICTED: transcription elongation factor S...    56   8e-06
ref|XP_004249330.1| PREDICTED: transcription elongation factor S...    56   8e-06

>ref|XP_010312166.1| PREDICTED: transcription elongation factor SPT6 isoform X2 [Solanum
           lycopersicum]
          Length = 1641

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 33/59 (55%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 83  FIVDDVXXXXXXXXXDRADSGXXXXXXXXXXXXXSE--YVLDEDDYELLQESNISVPRP 253
           FIVDDV         DRADS              SE  YVLDEDDYELLQESNI+VPRP
Sbjct: 54  FIVDDVEEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRP 112


>ref|XP_006339249.1| PREDICTED: transcription elongation factor SPT6-like isoform X2
           [Solanum tuberosum]
          Length = 1642

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 33/59 (55%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 83  FIVDDVXXXXXXXXXDRADSGXXXXXXXXXXXXXSE--YVLDEDDYELLQESNISVPRP 253
           FIVDDV         DRADS              SE  YVLDEDDYELLQESNI+VPRP
Sbjct: 54  FIVDDVEEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRP 112


>ref|XP_006339248.1| PREDICTED: transcription elongation factor SPT6-like isoform X1
           [Solanum tuberosum]
          Length = 1643

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 33/59 (55%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 83  FIVDDVXXXXXXXXXDRADSGXXXXXXXXXXXXXSE--YVLDEDDYELLQESNISVPRP 253
           FIVDDV         DRADS              SE  YVLDEDDYELLQESNI+VPRP
Sbjct: 55  FIVDDVEEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRP 113


>ref|XP_004249330.1| PREDICTED: transcription elongation factor SPT6 isoform X1 [Solanum
           lycopersicum]
          Length = 1642

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 33/59 (55%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 83  FIVDDVXXXXXXXXXDRADSGXXXXXXXXXXXXXSE--YVLDEDDYELLQESNISVPRP 253
           FIVDDV         DRADS              SE  YVLDEDDYELLQESNI+VPRP
Sbjct: 55  FIVDDVEEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRP 113


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