BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00011894
         (1073 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        234   2e-76
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   230   5e-75
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                229   2e-74
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               229   2e-74
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   226   4e-74
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   226   4e-74
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     226   3e-73
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   225   5e-73
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         225   7e-73
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           225   7e-73
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   220   2e-72
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     220   2e-72
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   204   1e-65
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   204   1e-65
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   204   1e-65
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   200   4e-65
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   200   6e-65
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           203   1e-64
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   196   1e-64
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   197   4e-64

>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  234 bits (596), Expect(3) = 2e-76
 Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 273 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGD 332

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 333 DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 392

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y LQG+T+ G  A T        D T LWH RLGH+SE G+ EL
Sbjct: 393 KGSLVVMKASIKSANLYHLQGTTILGNVA-TVSDSLSNSDATNLWHMRLGHMSEIGLAEL 451

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+DGQSIS LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 452 SKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 511



 Score = 79.3 bits (194), Expect(3) = 2e-76
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 513 YMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFC 567



 Score = 23.1 bits (48), Expect(3) = 2e-76
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 218  KSSSSYRGRSKSRGRYKSCKYCKR 241


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  230 bits (587), Expect(3) = 5e-75
 Identities = 116/240 (48%), Positives = 156/240 (65%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+VA D   D ELLV   G  +  +E +L+  CT+++C NRDWF+TYE V  G +L+ +
Sbjct: 215 KAAVATDNKPDAELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGD 274

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           N PCK++G+ T+         RT  DVRH+P LKRNLISL TLD  GY+++   G++K +
Sbjct: 275 NTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVT 334

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+     A +Y LQG+T+ G  A  T         + LWH RLGH+SE G+ EL
Sbjct: 335 KGSLVVMKADIKNADLYHLQGTTIVGNVAAVTDSLSN----SDLWHMRLGHMSEIGLAEL 390

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+DGQ+I  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 391 SKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGA 450



 Score = 78.6 bits (192), Expect(3) = 5e-75
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 452 YMMTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFC 506



 Score = 22.7 bits (47), Expect(3) = 5e-75
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K     R RSKS+ R K C Y K+
Sbjct: 160  KSSSGYRGRSKSRGRYKSCKYCKR 183


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  229 bits (583), Expect(3) = 2e-74
 Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 258 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGD 317

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 318 DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVT 377

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y LQG+T+ G  A T        D T LWH RLGH+SE G+ EL
Sbjct: 378 KGSLVVMKADIKSANLYHLQGTTILGNVA-TVSDSLSNSDATNLWHMRLGHMSEIGLAEL 436

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 437 SMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 496



 Score = 77.4 bits (189), Expect(3) = 2e-74
 Identities = 33/55 (60%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI++D+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 498 YMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFC 552



 Score = 23.1 bits (48), Expect(3) = 2e-74
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 203  KSSSSYRGRSKSRGRYKSCKYCKR 226


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  229 bits (583), Expect(3) = 2e-74
 Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 90  KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGD 149

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 150 DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVT 209

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y LQG+T+ G  A T        D T LWH RLGH+SE G+ EL
Sbjct: 210 KGSLVVMKADIKSANLYHLQGTTILGNVA-TVSDSLSNSDATNLWHMRLGHMSEIGLAEL 268

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 269 SMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 328



 Score = 77.4 bits (189), Expect(3) = 2e-74
 Identities = 33/55 (60%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI++D+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 330 YMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFC 384



 Score = 23.1 bits (48), Expect(3) = 2e-74
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 35   KSSSSYRGRSKSRGRYKSCKYCKR 58


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  226 bits (575), Expect(3) = 4e-74
 Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 9/239 (3%)
 Frame = -1

Query: 866  EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
            +A+V  D  +D ELLV   G ++  ++ +LN AC +++C NRDWF+TYE V  G +L+ +
Sbjct: 480  KAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGD 539

Query: 686  NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
            + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 540  DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 599

Query: 533  KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
            KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH++E G+ EL
Sbjct: 600  KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMTEIGLAEL 658

Query: 353  SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGG 177
            S+RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GG
Sbjct: 659  SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 717



 Score = 79.7 bits (195), Expect(3) = 4e-74
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 720 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFC 774



 Score = 23.1 bits (48), Expect(3) = 4e-74
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 425  KSSSSYRGRSKSRGRYKSCKYCKR 448


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  226 bits (575), Expect(3) = 4e-74
 Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 9/239 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +LN AC +++C NRDWF+TYE V  G +L+ +
Sbjct: 273 KAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGD 332

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 333 DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 392

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH++E G+ EL
Sbjct: 393 KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMTEIGLAEL 451

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGG 177
           S+RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GG
Sbjct: 452 SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 510



 Score = 79.7 bits (195), Expect(3) = 4e-74
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 513 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFC 567



 Score = 23.1 bits (48), Expect(3) = 4e-74
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 218  KSSSSYRGRSKSRGRYKSCKYCKR 241


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  226 bits (576), Expect(3) = 3e-73
 Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 182 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGD 241

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 242 DTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 301

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+     A +Y L+G+T+ G  A  +         T LWH RLGH+SE G+ EL
Sbjct: 302 KGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMSEIGLAEL 360

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 361 SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 420



 Score = 77.4 bits (189), Expect(3) = 3e-73
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+E C
Sbjct: 422 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELC 476



 Score = 21.9 bits (45), Expect(3) = 3e-73
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 991 RHRSKSKYRDKICNYRKK 938
           R RSKS+ R K C Y K+
Sbjct: 133 RGRSKSRGRYKSCKYCKR 150


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  225 bits (574), Expect(2) = 5e-73
 Identities = 114/240 (47%), Positives = 159/240 (66%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYETV  G +L+ +
Sbjct: 239 KAAVVTDEKSDAELLVAYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGD 298

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI TV         RT  DVRH+P+LKR+LIS  TLD  GYK++   G++K +
Sbjct: 299 DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVT 358

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH+SE G+ EL
Sbjct: 359 KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMSEIGLAEL 417

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+ GQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 418 SKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 477



 Score = 78.2 bits (191), Expect(2) = 5e-73
 Identities = 33/55 (60%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           Y+MTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 479 YIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFC 533


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  225 bits (573), Expect(2) = 7e-73
 Identities = 113/240 (47%), Positives = 159/240 (66%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 105 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGD 164

Query: 686 NAPCKISGIHTVR---------TFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI  V+         T  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 165 DTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 224

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH+SE G+ EL
Sbjct: 225 KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMSEIGLAEL 283

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 284 SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 343



 Score = 78.2 bits (191), Expect(2) = 7e-73
 Identities = 33/55 (60%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           Y+MTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 345 YIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFC 399


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  225 bits (573), Expect(2) = 7e-73
 Identities = 113/240 (47%), Positives = 159/240 (66%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A+V  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 105 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGD 164

Query: 686 NAPCKISGIHTVR---------TFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI  V+         T  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 165 DTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 224

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
           KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH+SE G+ EL
Sbjct: 225 KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMSEIGLAEL 283

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 284 SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 343



 Score = 78.2 bits (191), Expect(2) = 7e-73
 Identities = 33/55 (60%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           Y+MTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 345 YIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFC 399


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  220 bits (561), Expect(3) = 2e-72
 Identities = 112/240 (46%), Positives = 158/240 (65%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866  EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
            +A+V  D  +D ELLV   G ++  ++ +L+ A T+++C NRDWF+TYE +  G +L+ +
Sbjct: 308  KAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGD 367

Query: 686  NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
            + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 368  DTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 427

Query: 533  KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
            KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH+SE G+ EL
Sbjct: 428  KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMSEIGLAEL 486

Query: 353  SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
            S+R L+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 487  SKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGA 546



 Score = 79.7 bits (195), Expect(3) = 2e-72
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 548 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFC 602



 Score = 23.1 bits (48), Expect(3) = 2e-72
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 253  KSSSSYRGRSKSRGRYKSCKYCKR 276


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  220 bits (561), Expect(3) = 2e-72
 Identities = 112/240 (46%), Positives = 158/240 (65%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866  EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
            +A+V  D  +D ELLV   G ++  ++ +L+ A T+++C NRDWF+TYE +  G +L+ +
Sbjct: 308  KAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGD 367

Query: 686  NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
            + PC+++GI TV         RT  DVRH+P+LKR+LISL TLD  GYK++   G++K +
Sbjct: 368  DTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVT 427

Query: 533  KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
            KG+ VVM+    +A +Y L+G+T+ G  A  +         T LWH RLGH+SE G+ EL
Sbjct: 428  KGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHMSEIGLAEL 486

Query: 353  SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
            S+R L+DGQSI  LKFCEH IFGK KRV+F    H T+  LDY+HS+L GP+   S GGA
Sbjct: 487  SKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGA 546



 Score = 79.7 bits (195), Expect(3) = 2e-72
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+ T  ++K LRTDNG+EFC
Sbjct: 548 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFC 602



 Score = 23.1 bits (48), Expect(3) = 2e-72
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 253  KSSSSYRGRSKSRGRYKSCKYCKR 276


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  204 bits (518), Expect(2) = 1e-65
 Identities = 107/242 (44%), Positives = 151/242 (62%), Gaps = 10/242 (4%)
 Frame = -1

Query: 869 SEASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-V 693
           S AS A       + LVV  G     +E +L+ AC+F++C+ R+WFS+Y+ V KG ++ +
Sbjct: 262 SVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 321

Query: 692 ENNAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMK 540
            ++ PC I GI +V         RT  +VR++P + RNLISL TLD  GYK++   GV+K
Sbjct: 322 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 381

Query: 539 TSKGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMV 360
            SKG+ V ++   ++AK+YVL+G T++G  +            T LWH RLGH+S  GM 
Sbjct: 382 VSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMT 441

Query: 359 ELSRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRG 180
           EL +R L+ G + S +KFCEH IFGK KRV+F   +H TK TLDY+H++L GPS  PS G
Sbjct: 442 ELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLG 501

Query: 179 GA 174
           GA
Sbjct: 502 GA 503



 Score = 75.5 bits (184), Expect(2) = 1e-65
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+TIIDD+S+KVW +FLK K++    FK WK MIE+ T  ++K LRTDNG EFC
Sbjct: 505 YMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFC 559


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  204 bits (518), Expect(2) = 1e-65
 Identities = 107/242 (44%), Positives = 151/242 (62%), Gaps = 10/242 (4%)
 Frame = -1

Query: 869 SEASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-V 693
           S AS A       + LVV  G     +E +L+ AC+F++C+ R+WFS+Y+ V KG ++ +
Sbjct: 262 SVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 321

Query: 692 ENNAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMK 540
            ++ PC I GI +V         RT  +VR++P + RNLISL TLD  GYK++   GV+K
Sbjct: 322 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 381

Query: 539 TSKGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMV 360
            SKG+ V ++   ++AK+YVL+G T++G  +            T LWH RLGH+S  GM 
Sbjct: 382 VSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMT 441

Query: 359 ELSRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRG 180
           EL +R L+ G + S +KFCEH IFGK KRV+F   +H TK TLDY+H++L GPS  PS G
Sbjct: 442 ELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLG 501

Query: 179 GA 174
           GA
Sbjct: 502 GA 503



 Score = 75.5 bits (184), Expect(2) = 1e-65
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+TIIDD+S+KVW +FLK K++    FK WK MIE+ T  ++K LRTDNG EFC
Sbjct: 505 YMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFC 559


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  204 bits (518), Expect(2) = 1e-65
 Identities = 107/242 (44%), Positives = 151/242 (62%), Gaps = 10/242 (4%)
 Frame = -1

Query: 869 SEASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-V 693
           S AS A       + LVV  G     +E +L+ AC+F++C+ R+WFS+Y+ V KG ++ +
Sbjct: 262 SVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 321

Query: 692 ENNAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMK 540
            ++ PC I GI +V         RT  +VR++P + RNLISL TLD  GYK++   GV+K
Sbjct: 322 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 381

Query: 539 TSKGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMV 360
            SKG+ V ++   ++AK+YVL+G T++G  +            T LWH RLGH+S  GM 
Sbjct: 382 VSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMT 441

Query: 359 ELSRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRG 180
           EL +R L+ G + S +KFCEH IFGK KRV+F   +H TK TLDY+H++L GPS  PS G
Sbjct: 442 ELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLG 501

Query: 179 GA 174
           GA
Sbjct: 502 GA 503



 Score = 75.1 bits (183), Expect(2) = 1e-65
 Identities = 32/55 (58%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+T+IDD+S+KVW +FLK K++    FK WK MIE+ T  ++K LRTDNG EFC
Sbjct: 505 YMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFC 559


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] gi|22655747|gb|AAN04164.1| Putative
           retrotransposon protein [Oryza sativa Japonica Group]
           gi|31431214|gb|AAP53029.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group]
          Length = 1229

 Score =  200 bits (509), Expect(2) = 4e-65
 Identities = 106/229 (46%), Positives = 143/229 (62%), Gaps = 10/229 (4%)
 Frame = -1

Query: 830 ELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-VENNAPCKISGIHT 654
           + LV   G     +E +L+ AC F +C NRDWFS++++V  G ++ + +N P +I GI +
Sbjct: 274 DCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGS 333

Query: 653 V---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTSKGAFVVMRRLK 501
           V         RT  DVRH+P + RNLISL TLD  GYK++  GGV+K SKG+ V M    
Sbjct: 334 VQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDM 393

Query: 500 STAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVELSRRGLIDGQSI 321
           ++A +YVL+GST+ G               T LWH RLGH+SE GM EL +R L+DG + 
Sbjct: 394 NSANLYVLRGSTLHGSLTAAAVSKDEPSK-TNLWHMRLGHMSELGMAELMKRNLLDGCTQ 452

Query: 320 SNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
            N+KFCEH +FGK KRV+F   +H TK  LDY+H++L GPS  PS GGA
Sbjct: 453 GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGA 501



 Score = 77.0 bits (188), Expect(2) = 4e-65
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+TIIDD+S+KVW +FLK K++    FKEWK MIE+    E+K LRTDNG EFC
Sbjct: 503 YMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDNGGEFC 557


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  200 bits (508), Expect(2) = 6e-65
 Identities = 110/232 (47%), Positives = 148/232 (63%), Gaps = 13/232 (5%)
 Frame = -1

Query: 830 ELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-VENNAPCKISGIHT 654
           + LVV  G     +E +L+ AC+F++  NRDWFS+Y++V  G ++ + N+ P +I GI +
Sbjct: 277 DCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGS 336

Query: 653 V---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTSKGAFVVMRRLK 501
           V         RT  DVRH+P + RNLISL TLD  GYK++  GGV+K SKG+ V M    
Sbjct: 337 VQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDM 396

Query: 500 STAKVYVLQGSTVSGE---AAVTTPXXXXXXDVTRLWHKRLGHISENGMVELSRRGLIDG 330
           ++A +YVL+GST+ G    AAVT          T LWH RLGH+SE GM EL +R L+DG
Sbjct: 397 NSANLYVLRGSTLHGSVTAAAVTKDEPNK----TNLWHMRLGHMSELGMAELMKRNLLDG 452

Query: 329 QSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
            +  N+KFCE  +FGK KRV+F   +H TK  LDY+H++L GPS  PS GGA
Sbjct: 453 CTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGA 504



 Score = 76.6 bits (187), Expect(2) = 6e-65
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+TIIDD+S+KVW +FLK K++    FKEWK MIE+ T  E+K LRTDN  EFC
Sbjct: 506 YMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFC 560


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  203 bits (517), Expect(2) = 1e-64
 Identities = 107/242 (44%), Positives = 153/242 (63%), Gaps = 10/242 (4%)
 Frame = -1

Query: 869 SEASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-V 693
           + A+V++D   D   LVV  G     +E +L+ AC+F++C+ R+WFS+Y+ V KG ++ +
Sbjct: 266 ASAAVSDDDSGD--CLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 323

Query: 692 ENNAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMK 540
            ++ PC I GI +V         RT  +VR++P + RNLISL TLD  GYK++   GV+K
Sbjct: 324 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 383

Query: 539 TSKGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMV 360
            SKG+ V ++   ++AK+YVL+G T+ G  +            T LWH RLGH+S  GM 
Sbjct: 384 VSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMT 443

Query: 359 ELSRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRG 180
           EL +R L+ G + S +KFCEH IFGK KRV+F   +H TK TLDY+H++L GPS  PS G
Sbjct: 444 ELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLG 503

Query: 179 GA 174
           GA
Sbjct: 504 GA 505



 Score = 72.4 bits (176), Expect(2) = 1e-64
 Identities = 32/55 (58%), Positives = 41/55 (74%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+TIIDD+S+KVW +FLK K++    FK WK MIE+ T  ++K L TDNG EFC
Sbjct: 507 YMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFC 561


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  196 bits (498), Expect(3) = 1e-64
 Identities = 106/240 (44%), Positives = 145/240 (60%), Gaps = 9/240 (3%)
 Frame = -1

Query: 866 EASVAEDGFTDRELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFILVEN 687
           +A++  D  +D ELLV   G ++  ++ +L+ ACT+++C NRDWF+TYE V  G +L+ +
Sbjct: 215 KAAIVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGD 274

Query: 686 NAPCKISGIHTV---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTS 534
           + PC+++GI  V         RT  DVRH P+LKR+LISL TLD  GYK++   G++K  
Sbjct: 275 DTPCEVAGIGIVQIKMFDGCIRTLSDVRHFPNLKRSLISLRTLDRKGYKYSGGDGILKLI 334

Query: 533 KGAFVVMRRLKSTAKVYVLQGSTVSGEAAVTTPXXXXXXDVTRLWHKRLGHISENGMVEL 354
            G             V V+  S  + +A             T LWH RLGH+SE G+ EL
Sbjct: 335 LG------------NVAVVSDSLSNSDA-------------TNLWHMRLGHMSEIGLAEL 369

Query: 353 SRRGLIDGQSISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
           S+RGL+ GQSI  LKFCEH IFGK KRV+F    H T+ TLDY+HS+L GP+   S GGA
Sbjct: 370 SKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGTLDYVHSDLWGPARKTSFGGA 429



 Score = 77.4 bits (189), Expect(3) = 1e-64
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YMMTI+DD+S+KVW +FLK K      FKEWKTM+E+    ++K LRTDNG+EFC
Sbjct: 431 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQIERKVKILRTDNGMEFC 485



 Score = 23.1 bits (48), Expect(3) = 1e-64
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 1009 KIGGNVRHRSKSKYRDKICNYRKK 938
            K   + R RSKS+ R K C Y K+
Sbjct: 160  KSSSSYRGRSKSRGRYKSCKYCKR 183


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  197 bits (501), Expect(2) = 4e-64
 Identities = 106/230 (46%), Positives = 148/230 (64%), Gaps = 11/230 (4%)
 Frame = -1

Query: 830 ELLVVSDGNSKPWEECVLNLACTFYVCSNRDWFSTYETVSKGFIL-VENNAPCKISGIHT 654
           + LVV  G     +E +L+ AC+F++C NRDWFS+Y++V  G ++ + ++ P +I GI +
Sbjct: 277 DCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGS 336

Query: 653 V---------RTFGDVRHVPDLKRNLISLGTLDENGYKFTAEGGVMKTSKGAFVVMRRLK 501
           V         RT  DVRH+P + RNLISL TLD  GYK+++ GGV+K SKG+ V M    
Sbjct: 337 VQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDM 396

Query: 500 STAKVYVLQGSTVSGEAAVTTPXXXXXXDV-TRLWHKRLGHISENGMVELSRRGLIDGQS 324
           ++A +YVL+GST+ G  +VT         + T LWH RLGH+SE GM EL +R L+DG +
Sbjct: 397 NSANLYVLRGSTLHG--SVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCT 454

Query: 323 ISNLKFCEHYIFGKQKRVRFAKGIHNTKITLDYIHSNLSGPSMVPSRGGA 174
              +KFCEH +FGK KRV+F   +H TK  LDY+H++L GPS     GGA
Sbjct: 455 QGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGA 504



 Score = 76.6 bits (187), Expect(2) = 4e-64
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = -3

Query: 171 YMMTIIDDFSKKVWIFFLKRKNNVLPRFKEWKTMIEK*TGNEIKHLRTDNGLEFC 7
           YM+TIIDD+S+KVW +FLK K++    FKEWK  IE+ T  E+K LRTDNG EFC
Sbjct: 506 YMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFC 560