BLASTX nr result
ID: Forsythia23_contig00005425
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00005425
(1994 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula] 428 e-147
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [... 517 e-144
ref|YP_009110633.1| RNA polymerase alpha subunit (chloroplast) [... 513 e-142
ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum ind... 495 e-137
gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast... 494 e-136
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [... 494 e-136
ref|YP_009117253.1| RNA polymerase alpha subunit (chloroplast) [... 492 e-136
ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]... 491 e-136
sp|Q06RA0.2|RPOA_JASNU RecName: Full=DNA-directed RNA polymerase... 491 e-136
ref|YP_778521.1| RNA polymerase alpha subunit [Jasminum nudiflor... 491 e-136
ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia t... 490 e-135
ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [... 488 e-135
ref|YP_009144659.1| RNA polymerase alpha subunit (chloroplast) [... 488 e-135
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast... 488 e-135
ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [... 487 e-134
ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [... 487 e-134
ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta... 486 e-134
gb|ADD31215.1| RNA polymerase alpha subunit protein (chloroplast... 486 e-134
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [... 486 e-134
ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [... 486 e-134
>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
Length = 466
Score = 428 bits (1100), Expect(3) = e-147
Identities = 214/253 (84%), Positives = 224/253 (88%)
Frame = +3
Query: 1155 REKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 1334
R+KV VS RTLQWKCVESR DSKRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195
Query: 1335 TRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDII 1514
TR K E +PHEYSTI GIQES+HEILMNLKEIVL+SNLYGT DASIC +GPGYVTAQDII
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255
Query: 1515 LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVRNA 1694
LPP VEIVDNTQHIA+LTEPI+LCI LQIER RGY IK +N QDGSY IDAVFMPVRNA
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315
Query: 1695 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDN 1874
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEENL E+N
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 375
Query: 1875 QHTVPLSPLTFHD 1913
QH V L TFHD
Sbjct: 376 QHKVTLPLFTFHD 388
Score = 124 bits (310), Expect(3) = e-147
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = +1
Query: 823 SAGTCGFKGTRRGTPFXXXXXXXXXIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 1002
SAG+CGFKGTRRGTPF IRTVVDQGMQRA V+IKGPGLGRDAALRAI RSGI
Sbjct: 55 SAGSCGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGI 114
Query: 1003 LLTFVRDVTPMPHNGC 1050
LL F+RDVTP+PHNGC
Sbjct: 115 LLRFIRDVTPIPHNGC 130
Score = 22.7 bits (47), Expect(3) = e-147
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1960 SIFIDQSELSP 1992
SIFIDQ ELSP
Sbjct: 406 SIFIDQLELSP 416
>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
subunit [Olea woodiana subsp. woodiana]
gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
subunit [Olea europaea subsp. maroccana]
gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
(chloroplast) [Olea europaea] gi|291059284|gb|ADD72120.1|
RNA polymerase alpha subunit [Olea europaea]
gi|328795464|emb|CBR30346.1| RNA polymerase alpha subunit
[Olea europaea subsp. europaea]
gi|334084432|emb|CBR23861.1| RNA polymerase alpha subunit
[Olea europaea subsp. cuspidata]
gi|334084518|emb|CBR24655.1| RNA polymerase alpha subunit
[Olea europaea subsp. europaea]
gi|334084604|emb|CBR30439.1| RNA polymerase alpha subunit
[Olea europaea subsp. europaea]
gi|334084690|emb|CBS29383.1| RNA polymerase alpha subunit
[Olea woodiana subsp. woodiana]
gi|334084895|emb|CBS29273.1| RNA polymerase alpha subunit
[Olea europaea subsp. maroccana]
gi|334084981|emb|CBJ04329.1| RNA polymerase alpha subunit
[Olea europaea subsp. cuspidata]
gi|334085067|emb|CBR23770.1| RNA polymerase alpha subunit
[Olea europaea subsp. cuspidata]
gi|510934435|emb|CCQ09133.1| RNA polymerase alpha subunit
(chloroplast) [Olea europaea subsp. europaea]
Length = 337
Score = 517 bits (1332), Expect(2) = e-144
Identities = 252/255 (98%), Positives = 254/255 (99%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPIDLCIGLQI+RNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSPLTFHD
Sbjct: 241 DNQHTVPLSPLTFHD 255
Score = 23.5 bits (49), Expect(2) = e-144
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1960 SIFIDQSELSP 1992
SIFIDQSE SP
Sbjct: 271 SIFIDQSEFSP 281
>ref|YP_009110633.1| RNA polymerase alpha subunit (chloroplast) [Hesperelaea palmeri]
gi|725798317|emb|CED79793.1| RNA polymerase alpha subunit
(chloroplast) [Hesperelaea palmeri]
Length = 337
Score = 513 bits (1322), Expect(2) = e-142
Identities = 250/254 (98%), Positives = 252/254 (99%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENVPHEYSTIAGIQESVHEI MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPIDLCIGLQI+RNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFH 1910
DNQHTVPLSPLTFH
Sbjct: 241 DNQHTVPLSPLTFH 254
Score = 23.5 bits (49), Expect(2) = e-142
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1960 SIFIDQSELSP 1992
SIFIDQSE SP
Sbjct: 271 SIFIDQSEFSP 281
>ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum indicum]
gi|347448327|gb|AEO92738.1| RNA polymerase alpha subunit
(chloroplast) [Sesamum indicum]
gi|496538633|gb|AGL45368.1| RpoA (chloroplast) [Sesamum
indicum]
Length = 337
Score = 495 bits (1275), Expect = e-137
Identities = 242/255 (94%), Positives = 245/255 (96%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENVPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICV+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI CIGL+IERNRGYLIKMP NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIHFCIGLEIERNRGYLIKMPQNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQ TVPLSP TFHD
Sbjct: 241 DNQRTVPLSPFTFHD 255
>gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast) [Antirrhinum
majus]
Length = 336
Score = 494 bits (1272), Expect = e-136
Identities = 238/255 (93%), Positives = 246/255 (96%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K EN+PHEYSTI GIQESVHEILMNLKEIVLR+NLYGTCDASIC RGPGYVTAQD
Sbjct: 61 CITRVKSENIPHEYSTITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI+ CIGL+IERNRGYLIKMPHNFQDGSY IDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPL+
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLD 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHT+PLSP +FHD
Sbjct: 241 DNQHTIPLSPFSFHD 255
>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis] gi|557136896|emb|CDI43950.1| RNA polymerase
alpha subunit (chloroplast) [Lindenbergia philippensis]
Length = 336
Score = 494 bits (1272), Expect = e-136
Identities = 241/255 (94%), Positives = 245/255 (96%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREK+TVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENV HEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICV GPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVMGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NMNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQ TVPLSP TFHD
Sbjct: 241 DNQRTVPLSPFTFHD 255
>ref|YP_009117253.1| RNA polymerase alpha subunit (chloroplast) [Premna microphylla]
gi|748013937|gb|AJE28407.1| RNA polymerase alpha subunit
(chloroplast) [Premna microphylla]
Length = 336
Score = 492 bits (1267), Expect = e-136
Identities = 238/255 (93%), Positives = 245/255 (96%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVT STRTLQWKCVESR D KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTASTRTLQWKCVESRTDGKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
C+TR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CLTRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI LCIGL+IERNRGYL+KMP+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPISLCIGLEIERNRGYLVKMPNNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSP FHD
Sbjct: 241 DNQHTVPLSPFPFHD 255
>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
[Ajuga reptans]
Length = 337
Score = 491 bits (1265), Expect = e-136
Identities = 240/255 (94%), Positives = 245/255 (96%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGT DASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTFDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGYLIKMPH FQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLKIERNRGYLIKMPHKFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGNGNEKQEILFLEIWTNGSL PKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLNPKEALHEASRNLIDLFIPFLYKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHT PLSP TFHD
Sbjct: 241 DNQHTAPLSPFTFHD 255
>sp|Q06RA0.2|RPOA_JASNU RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP;
AltName: Full=Plastid-encoded RNA polymerase subunit
alpha; Short=RNA polymerase subunit alpha (chloroplast)
[Jasminum nudiflorum]
Length = 355
Score = 491 bits (1264), Expect = e-136
Identities = 239/255 (93%), Positives = 244/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKV VSTRTLQWKCVESREDSKRLYYGRFILSPL KGQADTI I +RRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESREDSKRLYYGRFILSPLRKGQADTIAIGIRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K +NVPHEYSTIAGIQESVHEILMN KEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYL+KMPHN QDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYG+GNEK EILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEE PLE
Sbjct: 181 NANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DN HTVPLSPLTFHD
Sbjct: 241 DNHHTVPLSPLTFHD 255
>ref|YP_778521.1| RNA polymerase alpha subunit [Jasminum nudiflorum]
gi|110456253|gb|ABG74658.1| RNA polymerase alpha subunit
[Jasminum nudiflorum]
Length = 270
Score = 491 bits (1264), Expect = e-136
Identities = 239/255 (93%), Positives = 244/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKV VSTRTLQWKCVESREDSKRLYYGRFILSPL KGQADTI I +RRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESREDSKRLYYGRFILSPLRKGQADTIAIGIRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K +NVPHEYSTIAGIQESVHEILMN KEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYL+KMPHN QDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYG+GNEK EILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEE PLE
Sbjct: 181 NANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DN HTVPLSPLTFHD
Sbjct: 241 DNHHTVPLSPLTFHD 255
>ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia takesimensis]
gi|744673771|gb|AJD00756.1| RNA polymerase alpha subunit
[Scrophularia takesimensis]
Length = 335
Score = 490 bits (1261), Expect = e-135
Identities = 240/255 (94%), Positives = 243/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENV HEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGY KMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYFFKMPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGN NEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NVNHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTV LSP FHD
Sbjct: 241 DNQHTVSLSPFYFHD 255
>ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [Tectona grandis]
gi|438687635|emb|CCP47162.1| RNA polymerase alpha subunit
(chloroplast) [Tectona grandis]
gi|438688319|emb|CCP47251.1| RNA polymerase alpha subunit
(chloroplast) [Tectona grandis]
gi|438688443|emb|CCP47340.1| RNA polymerase alpha subunit
(chloroplast) [Tectona grandis]
Length = 337
Score = 488 bits (1257), Expect(2) = e-135
Identities = 240/255 (94%), Positives = 245/255 (96%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTC ASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCGASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPI+LCI L+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIELEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENL LE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLLLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTV LSP TFHD
Sbjct: 241 DNQHTVLLSPFTFHD 255
Score = 23.1 bits (48), Expect(2) = e-135
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1960 SIFIDQSELSP 1992
SIFIDQSEL P
Sbjct: 271 SIFIDQSELPP 281
>ref|YP_009144659.1| RNA polymerase alpha subunit (chloroplast) [Scutellaria baicalensis]
gi|827345858|gb|AKJ77159.1| RNA polymerase alpha subunit
(chloroplast) [Scutellaria baicalensis]
Length = 337
Score = 488 bits (1255), Expect(2) = e-135
Identities = 237/255 (92%), Positives = 244/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQW+CVESR DSKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWRCVESRTDSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASL EPI+LCIGL+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLAEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYENGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQH PLSP T HD
Sbjct: 241 DNQHAGPLSPFTLHD 255
Score = 23.9 bits (50), Expect(2) = e-135
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 1958 NRFLLTNQNCLP 1993
+RFLL N NCLP
Sbjct: 270 SRFLLINPNCLP 281
>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
gi|108773161|ref|YP_635671.1| RNA polymerase alpha
subunit [Solanum tuberosum]
gi|565356831|ref|XP_006345266.1| PREDICTED: DNA-directed
RNA polymerase subunit alpha-like [Solanum tuberosum]
gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Solanum bulbocastanum]
gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
[Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
polymerase alpha subunit [Solanum bulbocastanum]
gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
[Solanum tuberosum] gi|329124614|gb|AEB72171.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
tuberosum] gi|329124701|gb|AEB72257.1| RNA polymerase
alpha subunit (chloroplast) [Solanum tuberosum]
Length = 337
Score = 488 bits (1256), Expect = e-135
Identities = 238/255 (93%), Positives = 244/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSP TFHD
Sbjct: 241 DNQHTVPLSPFTFHD 255
>ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [Saracha punctata]
gi|772657870|ref|YP_009128870.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma loxense]
gi|788229498|ref|YP_009123663.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma stenanthum]
gi|788512410|ref|YP_009123188.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia obovata]
gi|803360269|ref|YP_009123382.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma nitidum]
gi|813559832|ref|YP_009132783.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia brachyacantha]
gi|821318364|ref|YP_009139499.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia solanacea]
gi|827046045|ref|YP_009142357.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma tingoanum]
gi|756419301|gb|AJL34440.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia obovata]
gi|756762019|gb|AJM70131.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma nitidum]
gi|757173743|gb|AJN90537.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma stenanthum]
gi|758185536|gb|AJO61611.1| RNA polymerase alpha subunit
(chloroplast) [Saracha punctata]
gi|765365581|gb|AJR30409.1| RNA polymerase alpha subunit
(chloroplast) [Vassobia breviflora]
gi|766544031|gb|AJS14284.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma loxense]
gi|766544117|gb|AJS14368.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma calycinum]
gi|770591288|gb|AJW75080.1| ribosomal protein L16
(chloroplast) [Vassobia dichotoma]
gi|800876083|gb|AKA66563.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia brachyacantha]
gi|817597882|gb|AKF78442.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia solanacea]
gi|820957844|gb|AKH02349.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma tingoanum]
Length = 337
Score = 487 bits (1254), Expect = e-134
Identities = 238/255 (93%), Positives = 243/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVE VDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSP TFHD
Sbjct: 241 DNQHTVPLSPFTFHD 255
>ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [Capsicum annuum]
gi|814071816|ref|YP_009122895.1| RNA polymerase alpha
subunit (chloroplast) [Capsicum lycianthoides]
gi|401065964|gb|AFP90808.1| RNA polymerase alpha subunit
(chloroplast) [Capsicum annuum]
gi|641803841|gb|AIA76992.1| RNA polymerase alpha subunit
(chloroplast) (chloroplast) [Capsicum annuum var.
glabriusculum] gi|756141197|gb|AJK90778.1| RNA polymerase
alpha subunit (chloroplast) [Capsicum lycianthoides]
Length = 337
Score = 487 bits (1254), Expect = e-134
Identities = 238/255 (93%), Positives = 243/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVE VDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSP TFHD
Sbjct: 241 DNQHTVPLSPFTFHD 255
>ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta]
gi|608608813|gb|AHW52216.1| RNA polymerase alpha subunit
(chloroplast) [Rhazya stricta]
gi|645929242|gb|AIB08766.1| RNA polymerase alpha subunit
[Rhazya stricta]
Length = 337
Score = 486 bits (1252), Expect = e-134
Identities = 237/255 (92%), Positives = 243/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREK+TVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTC+ASICV+GPGYVTAQD
Sbjct: 61 CITRVKFEKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
I+LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK P NFQDGSYPIDAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEEN LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
+NQH VPLSP TFHD
Sbjct: 241 NNQHAVPLSPFTFHD 255
>gb|ADD31215.1| RNA polymerase alpha subunit protein (chloroplast) [Ilex cornuta]
Length = 337
Score = 486 bits (1252), Expect = e-134
Identities = 238/255 (93%), Positives = 241/255 (94%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR K E +PHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK P+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYRNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHT+PL P FHD
Sbjct: 241 DNQHTIPLPPFNFHD 255
>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
gi|813424048|ref|YP_009131744.1| RNA polymerase alpha
subunit (chloroplast) [Solanum cheesmaniae]
gi|813424153|ref|YP_009131993.1| RNA polymerase alpha
subunit (chloroplast) [Solanum habrochaites]
gi|813559439|ref|YP_009131827.1| RNA polymerase alpha
subunit (chloroplast) [Solanum chilense]
gi|813559523|ref|YP_009131910.1| RNA polymerase alpha
subunit (chloroplast) [Solanum galapagense]
gi|813559607|ref|YP_009132159.1| RNA polymerase alpha
subunit (chloroplast) [Solanum peruvianum]
gi|813559691|ref|YP_009132242.1| RNA polymerase alpha
subunit (chloroplast) [Solanum pimpinellifolium]
gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
(chloroplast) [Solanum lycopersicum]
gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|89241703|emb|CAJ32426.1| RNA polymerase alpha chain
[Solanum lycopersicum] gi|757813377|gb|AJO25142.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
lycopersicum] gi|779776248|gb|AJY78722.1| RNA polymerase
alpha subunit (chloroplast) [Solanum cheesmaniae]
gi|779776337|gb|AJY78805.1| RNA polymerase alpha subunit
(chloroplast) [Solanum chilense]
gi|779776427|gb|AJY78888.1| RNA polymerase alpha subunit
(chloroplast) [Solanum galapagense]
gi|779776518|gb|AJY78971.1| RNA polymerase alpha subunit
(chloroplast) [Solanum habrochaites]
gi|779776608|gb|AJY79054.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|779776789|gb|AJY79220.1| RNA polymerase alpha subunit
(chloroplast) [Solanum peruvianum]
gi|779776879|gb|AJY79303.1| RNA polymerase alpha subunit
(chloroplast) [Solanum pimpinellifolium]
Length = 337
Score = 486 bits (1252), Expect = e-134
Identities = 237/255 (92%), Positives = 244/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSP TFHD
Sbjct: 241 DNQHTVPLSPFTFHD 255
>ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [Solanum neorickii]
gi|779776699|gb|AJY79137.1| RNA polymerase alpha subunit
(chloroplast) [Solanum neorickii]
Length = 337
Score = 486 bits (1251), Expect = e-134
Identities = 236/255 (92%), Positives = 244/255 (95%)
Frame = +3
Query: 1149 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1328
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1329 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1508
CITR+K E VPHEYSTI GIQESVHEILMNLKE+VLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEVVLRSNLYGTSEASICVKGPGYVTAQD 120
Query: 1509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1688
IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1689 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1868
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1869 DNQHTVPLSPLTFHD 1913
DNQHTVPLSP TFHD
Sbjct: 241 DNQHTVPLSPFTFHD 255