BLASTX nr result

ID: Forsythia23_contig00004121 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia23_contig00004121
         (7270 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011490729.1| PREDICTED: apolipoprotein B-100-like isoform...    63   3e-06
ref|XP_011490728.1| PREDICTED: apolipoprotein B-100-like isoform...    63   3e-06

>ref|XP_011490729.1| PREDICTED: apolipoprotein B-100-like isoform X2 [Oryzias latipes]
          Length = 4393

 Score = 63.2 bits (152), Expect = 3e-06
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 8/348 (2%)
 Frame = -3

Query: 6758 ALISCKSRVCTQQLLKVI-----SSQQVDAIRASYYMTRIAVGDKQSLKDEQEIKQFAES 6594
            AL  C +  CT  ++++I      S +VDA+   Y ++     D+  +KD   + Q+ +S
Sbjct: 363  ALFQCGTSECTSAIMQIIWTIDGVSLEVDAL--VYGLSLQPDPDRARVKDMLSMAQYKQS 420

Query: 6593 FVXXXXXXXXXXXXQSEAVERQKLFATTALIGKWIQAKPADEQIKQVAEQVAKTIVERYV 6414
                                +  ++A    + K+ + +   E I +V+     T +E+ +
Sbjct: 421  --------------------KAIMYALANTVKKFYKGEVTPE-ITEVS-----TFMEQLL 454

Query: 6413 KPVSEQEVEQYKQTEQPSAELAKKIAKRSAALKALA---NIPGHVLKQIASAQEIEQTIV 6243
               S+ E+        P  +    +  R   + A A   + P  V   +  +Q+   T +
Sbjct: 455  NDCSK-EIPDTASDFSPDPKEMSFLVLRVVGVMAQAMQDSSPSLVSSVLRCSQK---TDL 510

Query: 6242 AIAQNKRELSTVRQSAIECLEQNDKQTHTLKQLAFDQEEPIEVRVAAYRALMTVAYQGDE 6063
             +A  K  L T++Q     ++ ND+   TL +L  D + P+E R+AAY  LM       +
Sbjct: 511  PLANQKAALRTLQQ-----MDMNDEIRSTLMELYRDTQSPLEKRIAAYLVLM-------K 558

Query: 6062 KTDESAKEQMAAEIVDEVVKHCEEQRNQQQDEQFVLYAISHLDNVRTSQQPEHRAIKETI 5883
            K D S    +  ++V+ ++K        ++D+Q   + +S+L+N+  S+ P+   IK  I
Sbjct: 559  KPDRS----LLRDLVNSLMK--------ERDKQLRSFVVSYLNNILRSEDPQMLQIKADI 606

Query: 5882 AKNKQHYMQIQVLCKKLKQQLGDVRRSSRNYKLEQEFSQIESGLALEG 5739
             K         VL  +L  Q       SRNYK+E     + S +  +G
Sbjct: 607  EK---------VLQGELPPQNNVFHGLSRNYKMESPLGSVHSNIIFDG 645


>ref|XP_011490728.1| PREDICTED: apolipoprotein B-100-like isoform X1 [Oryzias latipes]
          Length = 4395

 Score = 63.2 bits (152), Expect = 3e-06
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 8/348 (2%)
 Frame = -3

Query: 6758 ALISCKSRVCTQQLLKVI-----SSQQVDAIRASYYMTRIAVGDKQSLKDEQEIKQFAES 6594
            AL  C +  CT  ++++I      S +VDA+   Y ++     D+  +KD   + Q+ +S
Sbjct: 363  ALFQCGTSECTSAIMQIIWTIDGVSLEVDAL--VYGLSLQPDPDRARVKDMLSMAQYKQS 420

Query: 6593 FVXXXXXXXXXXXXQSEAVERQKLFATTALIGKWIQAKPADEQIKQVAEQVAKTIVERYV 6414
                                +  ++A    + K+ + +   E I +V+     T +E+ +
Sbjct: 421  --------------------KAIMYALANTVKKFYKGEVTPE-ITEVS-----TFMEQLL 454

Query: 6413 KPVSEQEVEQYKQTEQPSAELAKKIAKRSAALKALA---NIPGHVLKQIASAQEIEQTIV 6243
               S+ E+        P  +    +  R   + A A   + P  V   +  +Q+   T +
Sbjct: 455  NDCSK-EIPDTASDFSPDPKEMSFLVLRVVGVMAQAMQDSSPSLVSSVLRCSQK---TDL 510

Query: 6242 AIAQNKRELSTVRQSAIECLEQNDKQTHTLKQLAFDQEEPIEVRVAAYRALMTVAYQGDE 6063
             +A  K  L T++Q     ++ ND+   TL +L  D + P+E R+AAY  LM       +
Sbjct: 511  PLANQKAALRTLQQ-----MDMNDEIRSTLMELYRDTQSPLEKRIAAYLVLM-------K 558

Query: 6062 KTDESAKEQMAAEIVDEVVKHCEEQRNQQQDEQFVLYAISHLDNVRTSQQPEHRAIKETI 5883
            K D S    +  ++V+ ++K        ++D+Q   + +S+L+N+  S+ P+   IK  I
Sbjct: 559  KPDRS----LLRDLVNSLMK--------ERDKQLRSFVVSYLNNILRSEDPQMLQIKADI 606

Query: 5882 AKNKQHYMQIQVLCKKLKQQLGDVRRSSRNYKLEQEFSQIESGLALEG 5739
             K         VL  +L  Q       SRNYK+E     + S +  +G
Sbjct: 607  EK---------VLQGELPPQNNVFHGLSRNYKMESPLGSVHSNIIFDG 645


Top