BLASTX nr result
ID: Forsythia23_contig00000505
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia23_contig00000505
(3851 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I sub... 1486 0.0
ref|XP_012834350.1| PREDICTED: DNA-directed RNA polymerase I sub... 1461 0.0
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub... 1370 0.0
ref|XP_009605274.1| PREDICTED: DNA-directed RNA polymerase I sub... 1361 0.0
ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I sub... 1356 0.0
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub... 1349 0.0
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise... 1344 0.0
emb|CDP10074.1| unnamed protein product [Coffea canephora] 1330 0.0
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub... 1209 0.0
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 1209 0.0
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera] 1131 0.0
ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub... 1130 0.0
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 1116 0.0
ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I sub... 1100 0.0
gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas] 1100 0.0
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro... 1096 0.0
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ... 1096 0.0
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro... 1091 0.0
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ... 1091 0.0
ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I sub... 1084 0.0
>ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Sesamum
indicum]
Length = 1701
Score = 1486 bits (3847), Expect = 0.0
Identities = 748/884 (84%), Positives = 810/884 (91%), Gaps = 4/884 (0%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN+ KLR
Sbjct: 450 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNAGKLR 509
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
A+INGP+IHPGATTYVD VSTVKLPS+KKMR+AISRKLPSSRG+V+QSGK NE EFEGK
Sbjct: 510 GAVINGPEIHPGATTYVDSVSTVKLPSSKKMRVAISRKLPSSRGLVSQSGKINELEFEGK 569
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV
Sbjct: 570 FVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 629
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIV AVLLT+K+TFLTR EF+QL
Sbjct: 630 HFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTLKNTFLTRSEFSQL 689
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LYGSGVFA PGS G SRKVS VDSEG+++SVLP++WKP PLWTGKQVITALLNHITR
Sbjct: 690 LYGSGVFAGGPGSLAGKQSRKVSLVDSEGLVESVLPSIWKPEPLWTGKQVITALLNHITR 749
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRDQNAEHKLLIWKNELVRGVIDKAQFGKFG 2771
GCAPCTVKNQGK+PK+YFT S+YKN EED DQNAEH LLIWKNELVRGVIDKAQFGKFG
Sbjct: 750 GCAPCTVKNQGKVPKNYFTGSSYKN-GEEDEDQNAEHNLLIWKNELVRGVIDKAQFGKFG 808
Query: 2770 LVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKLEGEDV 2591
LVHT+QELYGSNSAGI LSALSRLFTIFLQIHGFTCGVDDLIILP+YD +RKEKLEGEDV
Sbjct: 809 LVHTIQELYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDVQRKEKLEGEDV 868
Query: 2590 GEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDK----GSQIS 2423
GEEVHC+FVKFK GQIG EELQLEIEKVIC +RESAT +LDMKMKNKLT++ GSQI
Sbjct: 869 GEEVHCDFVKFKPGQIGHEELQLEIEKVICRDRESATGALDMKMKNKLTNRLTREGSQIL 928
Query: 2422 KKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 2243
K LLT GLLKPFPKNCISVMTTTGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLPC
Sbjct: 929 KHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPC 988
Query: 2242 FSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 2063
F PWDFT+RAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE
Sbjct: 989 FPPWDFTARAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1048
Query: 2062 SLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFNT 1883
SLKV YDYTVRDADGSIIQFYYGEDGVDVH+TSFLKNFKAL DNQETI +K++N+R+F++
Sbjct: 1049 SLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNQETILQKYRNRRQFDS 1108
Query: 1882 YIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQN 1703
YI+KLP+GLE+EAR FI+EA +SE QK + +HL K RKA+ +K T K Q+
Sbjct: 1109 YIQKLPEGLEEEARRFIQEAGDLSSENQKASGIKHLNKSRKAR--------KKVTGKVQD 1160
Query: 1702 EFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1523
+F+EL+KQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1161 KFIELVKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1220
Query: 1522 ILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVELSINDQQVARI 1343
ILMTASD IKTPILTCPF+Q+R K DV+ LVSNVKKV++ADL ESMEV+LSI+ ARI
Sbjct: 1221 ILMTASDVIKTPILTCPFLQWRSKHDVVSLVSNVKKVTVADLIESMEVQLSIHQ---ARI 1277
Query: 1342 YKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
YKLKM LK TEFVSL D+ TL++ FLRELEDAIENHV+FLSRV
Sbjct: 1278 YKLKMKLKDTEFVSLRDIQETLKTVFLRELEDAIENHVIFLSRV 1321
Score = 490 bits (1261), Expect = e-135
Identities = 251/343 (73%), Positives = 282/343 (82%), Gaps = 2/343 (0%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDEE 994
++G+DLGSDVQKRKQQ++DEMDY KG+SD DHLE++D RKDEE
Sbjct: 1362 DKGDDLGSDVQKRKQQASDEMDYEDESDVDPGEDEGLG---KGKSDGDHLEDIDTRKDEE 1418
Query: 993 TDS-DDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEF-SDKKPRRAIYIAVKG 820
TD DD D+ASN+QN E +E+KSS ++ +K KS EE SDKK RRAIY+ VKG
Sbjct: 1419 TDDFDDKDDASNVQNVDEVMAEAKSSGKKDRAISKGIDKSIEELLSDKKIRRAIYMEVKG 1478
Query: 819 LHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKPK 640
L FEVHF FT EPH+LLAQIAQKTAKKV+IK +GKIS CK+V+YD DEKTVIWD+ KKPK
Sbjct: 1479 LSFEVHFTFTSEPHVLLAQIAQKTAKKVFIKRTGKISQCKVVQYDPDEKTVIWDNKKKPK 1538
Query: 639 KSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAARA 460
K + Q D ED AYWA+KASG DFKS WEMQDDLDLSRLYSNNI AMLKTYGVEAARA
Sbjct: 1539 KGDAEKQQADGEDSAYWAVKASGEDFKSIWEMQDDLDLSRLYSNNIHAMLKTYGVEAARA 1598
Query: 459 TIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETAS 280
T+IREV QVFDIYGVKIDYRHLSLIADYMTH GGYRPM+RHGSI+ESLSPF+KMSFETAS
Sbjct: 1599 TLIREVTQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETAS 1658
Query: 279 KFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
KFIVEAASH +TDNLETPSSRICLGLPVKMGTGCFDLMQKL++
Sbjct: 1659 KFIVEAASHALTDNLETPSSRICLGLPVKMGTGCFDLMQKLDI 1701
>ref|XP_012834350.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Erythranthe
guttatus] gi|604336035|gb|EYU39881.1| hypothetical
protein MIMGU_mgv1a000122mg [Erythranthe guttata]
Length = 1719
Score = 1461 bits (3782), Expect = 0.0
Identities = 722/885 (81%), Positives = 806/885 (91%), Gaps = 5/885 (0%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFAL+LTYPERVTPWN+ KLR
Sbjct: 457 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLR 516
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
A++NGPDIHPGATTYVD V+ VKLP ++KMR+AISRKLPSSRGVVTQSGK ++ EFEGK
Sbjct: 517 GAVVNGPDIHPGATTYVDSVTIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFEGK 576
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
V+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVL GE+TLRMHYANCSSYNADFDGDEINV
Sbjct: 577 TVHRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINV 636
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIV AVLLTMK+TF+ R EFNQL
Sbjct: 637 HFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQL 696
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LYGSGVFA PGS P NNSRKV+ +D+EGV++SVLPA+WKP PLWTGKQVITALLNHITR
Sbjct: 697 LYGSGVFASGPGSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITR 756
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRDQNAEHKLLIWKNELVRGVIDKAQFGKFG 2771
GCAP TV+NQGK+PK+YF ++Y EED DQNAEH LL+WKNELVRGVIDKAQFGKFG
Sbjct: 757 GCAPFTVENQGKIPKNYFFGNSY-TRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFG 815
Query: 2770 LVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKLEGEDV 2591
LVHTVQELYG++SAGIFLSALSR+FT+FLQIHGFTCGVDDLIILP+YD++RKEKLEGEDV
Sbjct: 816 LVHTVQELYGASSAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEGEDV 875
Query: 2590 GEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDK----GSQIS 2423
GE VHC+FVKFK GQIGP+ELQLEIEKVIC++RESATASLDMKMKNKL K GSQI
Sbjct: 876 GEVVHCDFVKFKPGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKLTREGSQIL 935
Query: 2422 KKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 2243
K LLT GLLKPFPKNCISVMTTTGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP
Sbjct: 936 KHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPS 995
Query: 2242 FSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 2063
F PWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE
Sbjct: 996 FPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLE 1055
Query: 2062 SLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFNT 1883
SLKV YDYTVRDADGSI+QFYYGEDG+DVHRTSFL NFKAL DN+ETIC+KFQ+KREFN+
Sbjct: 1056 SLKVCYDYTVRDADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQHKREFNS 1115
Query: 1882 YIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEK-EQ 1706
YI+KLP+GLE+EA+ FI+E + ++ Q + E RKA++KE L++ KA EQ
Sbjct: 1116 YIKKLPEGLEEEAKRFIQETQNKSLAKQSTSAGEGPHSSRKARKKEKLLKKEKAAAAYEQ 1175
Query: 1705 NEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1526
+ FLEL+KQKYLSSLAQ+GEPVGVIAAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ
Sbjct: 1176 DAFLELVKQKYLSSLAQAGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1235
Query: 1525 EILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVELSINDQQVAR 1346
EILM+AS+ IKTP+LTCPF Q+R K +V+ LVS+VKKVS+ADL E+MEV+LS+N + AR
Sbjct: 1236 EILMSASEVIKTPLLTCPFSQWRSKREVVSLVSHVKKVSVADLIENMEVQLSVNHKTAAR 1295
Query: 1345 IYKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
+YKLKM LK TEFVSLE++H TL++TFL ELEDAIENHV++LSR+
Sbjct: 1296 VYKLKMTLKDTEFVSLENMHETLKTTFLGELEDAIENHVLYLSRL 1340
Score = 453 bits (1166), Expect = e-124
Identities = 230/343 (67%), Positives = 269/343 (78%), Gaps = 1/343 (0%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDE 997
D++G+DLGSDVQKRKQQ+TD+MDY KG+SD ++LEE + KDE
Sbjct: 1381 DDKGDDLGSDVQKRKQQATDDMDYEDGSDGGAAEDDDSDLE-KGKSDVENLEEDETGKDE 1439
Query: 996 ETD-SDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYIAVKG 820
E++ +DD DEASN+QN+ E SE S G+ + KS E KK RRA Y+ VKG
Sbjct: 1440 ESEHTDDKDEASNVQNEDEAISEGTKSSVGSSKGKTSFDKSSVELKGKKIRRAFYMVVKG 1499
Query: 819 LHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKPK 640
FEVHF+F EPH+L+AQ+AQKT+KKVYI+ SGK+S CKMV YD DEKTVIWD+ KKPK
Sbjct: 1500 TKFEVHFEFHEEPHMLIAQLAQKTSKKVYIRKSGKVSQCKMVSYDPDEKTVIWDNSKKPK 1559
Query: 639 KSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAARA 460
+ K + ED +YWA+KASGVDFKSFWEM DDLDLSRLYSNNI AML TYGVEAARA
Sbjct: 1560 RGESKS---EEEDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNIHAMLTTYGVEAARA 1616
Query: 459 TIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETAS 280
TIIREVK VFDIYGVKIDYRHLSLIAD+MTH G Y PM+RHGSI+ESLSPF+KMSFETAS
Sbjct: 1617 TIIREVKHVFDIYGVKIDYRHLSLIADHMTHTGSYLPMSRHGSISESLSPFLKMSFETAS 1676
Query: 279 KFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
KFIVEAASHG+TD L+TPSSRICLGLPVKMGTG FD+MQ+L++
Sbjct: 1677 KFIVEAASHGLTDKLDTPSSRICLGLPVKMGTGSFDVMQQLDL 1719
>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
tuberosum]
Length = 1675
Score = 1370 bits (3546), Expect = 0.0
Identities = 675/887 (76%), Positives = 780/887 (87%), Gaps = 7/887 (0%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIG+PPYFALRLTYPER+TPWN+VK+R
Sbjct: 434 EKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMR 493
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
+A+INGP+ HPGA ++ D+++TVKLPSNKKMR+AISRKLPSSRG VTQSG+ NEYEFEGK
Sbjct: 494 DAVINGPENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGK 553
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 554 VVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 613
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIV AV+LTMK+TFLT EFNQL
Sbjct: 614 HFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQL 673
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LYGSGVFA P GN+S KVS VD EGV+Q+VLPAVWKP PLWTGKQVITALLNH+T+
Sbjct: 674 LYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTK 733
Query: 2950 GCAPCTVKNQGKLPKDYFTDST----YKNEDEEDRDQNAEHKLLIWKNELVRGVIDKAQF 2783
GCAPCTVKN+GK+P YF + Y++ +E++ D+ AE++ LIWKNELVRGVIDKAQF
Sbjct: 734 GCAPCTVKNKGKIPYPYFLSESRLVEYQSREEQE-DRTAENEFLIWKNELVRGVIDKAQF 792
Query: 2782 GKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKLE 2603
GKFGLVHT+QELYGSN AGI LSALSRLFTIFLQ+HGFTCGVDDL+ILP+YD RKE+LE
Sbjct: 793 GKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELE 852
Query: 2602 GEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDKGSQIS 2423
G+DVGEE HC+FVKFKRG+IGP ELQLEIEK + SN+E+ATA+LDMKMKNKL +KGSQ +
Sbjct: 853 GDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFN 912
Query: 2422 KKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 2243
K+LL KGLLKPFP+NCI++MT TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC
Sbjct: 913 KELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 972
Query: 2242 FSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 2063
F PWD SRAGG+++DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE
Sbjct: 973 FPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1032
Query: 2062 SLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFNT 1883
SLKV YDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKAL +NQETIC+K ++ R+ N+
Sbjct: 1033 SLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNS 1092
Query: 1882 YIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQN 1703
YIEKLPDGLE++ +HF K T +++K K K +KE +++ K +E+
Sbjct: 1093 YIEKLPDGLEEKVKHF---WEKRTKKLEK--------KLGKLVKKEEMVKQLK---EEEA 1138
Query: 1702 EFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1523
+FLEL++QKY SSLA SGEPVGV+A QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1139 DFLELVRQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1198
Query: 1522 ILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVE---LSINDQQV 1352
ILMTAS+ IKTPILTCPF+ ++ K D L++ VKK+++AD+ ESMEV+ LSI + QV
Sbjct: 1199 ILMTASEAIKTPILTCPFLGWQSKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQV 1258
Query: 1351 ARIYKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
+++YKL + LK +FVS ED TL+ FLRELEDAIE+H+ LS++
Sbjct: 1259 SQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIESHLALLSKI 1305
Score = 412 bits (1058), Expect = e-111
Identities = 211/345 (61%), Positives = 262/345 (75%), Gaps = 3/345 (0%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDE 997
DER EDL SD QKRKQQ+TDEMDY EK + +E+DN +E
Sbjct: 1343 DERTEDLSSDAQKRKQQTTDEMDYDDDENEDEAETTAEIEDEKSEQT----DEIDNGDEE 1398
Query: 996 ETDSDDNDEA-SNMQNDRETKSESKSSRAGAKS--TAKTNKKSGEEFSDKKPRRAIYIAV 826
E + N+E S +Q+ + S +KSS++ K+ T K NKK E S K R +++ V
Sbjct: 1399 EIGNRGNEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKK-ERRSKKDSDRCVFVDV 1457
Query: 825 KGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKK 646
+GLHFEVHF+F EPH+LLAQ+AQKTAKKVYIK+SGKI C+MVKY+ E TV+WD+ +
Sbjct: 1458 EGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQT 1517
Query: 645 PKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAA 466
++S + D AYWA+KA+GVDF +FWEMQDDLD++R+Y+NNI AML TYGVEAA
Sbjct: 1518 KQQS-------QDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAA 1570
Query: 465 RATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFET 286
RA+I+REVK VF IYGV+ID+RHLSLIAD+MTH GGY+PM+RHGSI+ESLSPF+KMSFET
Sbjct: 1571 RASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFET 1630
Query: 285 ASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
ASKFIVEAA+HG+TDNLETPSSRICLGLPVKMGTGCFD+MQKL++
Sbjct: 1631 ASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1675
>ref|XP_009605274.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
tomentosiformis]
Length = 1938
Score = 1361 bits (3523), Expect = 0.0
Identities = 678/893 (75%), Positives = 774/893 (86%), Gaps = 13/893 (1%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIGVPPYFALRLTYPERVTPWN+ K+R
Sbjct: 692 EKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGVPPYFALRLTYPERVTPWNAGKMR 751
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSN-----KKMRIAISRKLPSSRGVVTQSGKKNEY 3506
+AIINGP+ HPGA ++ D++STVKLPS KK+R+AISRKLPSSRG VTQSG+ +EY
Sbjct: 752 DAIINGPENHPGALSFADRISTVKLPSGNGTNIKKIRMAISRKLPSSRGAVTQSGRNDEY 811
Query: 3505 EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDG 3326
EFEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDG
Sbjct: 812 EFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 871
Query: 3325 DEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRD 3146
DE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIV AVLLTMK+TFLT
Sbjct: 872 DEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLQ 931
Query: 3145 EFNQLLYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALL 2966
EFNQLLYGSGVFA PGS GN+S KVS VDSEGV+Q++LPAVWKP PLWTGKQVITALL
Sbjct: 932 EFNQLLYGSGVFAAGPGSTSGNHSNKVSVVDSEGVVQTILPAVWKPKPLWTGKQVITALL 991
Query: 2965 NHITRGCAPCTVKNQGKLPKDYFTD----STYKNEDEEDRDQNAEHKLLIWKNELVRGVI 2798
NH+T+G PCTVKN+GK+P YF + Y++ +EE+ D+ AE+K LIWKNELVRGVI
Sbjct: 992 NHLTKGSPPCTVKNKGKIPYPYFLSLSRLAEYQSREEEE-DRTAENKFLIWKNELVRGVI 1050
Query: 2797 DKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEER 2618
DKAQFGKFGLVHT+QELYG+N AGI LSALSRLFTIFLQ+HGFTCG+DDL+ILP+YD R
Sbjct: 1051 DKAQFGKFGLVHTIQELYGANKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRR 1110
Query: 2617 KEKLEGEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDK 2438
KE+LEG DVGEE HC+FVKFK G+IGP ELQLEIEK I SN+E+ATA+LDMKMKNKL +K
Sbjct: 1111 KEELEGGDVGEEAHCDFVKFKPGEIGPLELQLEIEKAISSNKEAATAALDMKMKNKLANK 1170
Query: 2437 GSQISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 2258
GSQ +K+LL KGLLKPFP+NCI++MT TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG
Sbjct: 1171 GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 1230
Query: 2257 KTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 2078
KTLPCF PWDF SRAGG+++DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL
Sbjct: 1231 KTLPCFPPWDFASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1290
Query: 2077 IKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNK 1898
IKNLESLKV YDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKAL DNQETIC+K +
Sbjct: 1291 IKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKDNQETICQKLRQG 1350
Query: 1897 REFNTYIEKLPDGLEKEARHFI-REARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKA 1721
R+ N+YIE+LPDGLE++ + F ++A+K +++K +KE + K K
Sbjct: 1351 RKLNSYIERLPDGLEEKVKQFWGKKAKKLEKKLEKQVKKEEISKQLK------------- 1397
Query: 1720 TEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLG 1541
KE+ +FLEL+ QKY SSLA SGEPVGV+A QS+GEPSTQMTLNTFHLAGRGEMNVTLG
Sbjct: 1398 --KEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1455
Query: 1540 IPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVE---LS 1370
IPRLQEILMTASD IKTPI+TCPF+ ++ K D L++ VKK+++AD+ ESMEV LS
Sbjct: 1456 IPRLQEILMTASDAIKTPIMTCPFLGWKSKDDAQSLLAEVKKITVADMIESMEVNLLPLS 1515
Query: 1369 INDQQVARIYKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
I + QV+++YKL + LK EFVS ED TL+ FLRELEDAIE+H+ LS++
Sbjct: 1516 IYNHQVSQLYKLTVKLKEHEFVSSEDCDYTLKYVFLRELEDAIESHLALLSKI 1568
Score = 413 bits (1062), Expect = e-112
Identities = 215/345 (62%), Positives = 261/345 (75%), Gaps = 3/345 (0%)
Frame = -3
Query: 1176 DERGE-DLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKD 1000
DER E DL SD QKRKQQ+TDEMDY E +SDQ H E+ NR +
Sbjct: 1608 DERTEEDLSSDAQKRKQQTTDEMDYDDGPEDEASEAETTAEVEDEKSDQTH--EIGNRDE 1665
Query: 999 EETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYIAVKG 820
EET N+E ++ + E S K++++ K+T + KK E S K R+++IAV+G
Sbjct: 1666 EETGDHGNEEQTSKLHSEE--SNIKTAKSKTKTTVQQKKKK-ETRSKKDSDRSVFIAVEG 1722
Query: 819 LHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKPK 640
LHFEVHF+F EPH+LLAQ+AQKTAKKVYIK++GKI C+MVKYD E TV+WD
Sbjct: 1723 LHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNAGKIEQCRMVKYDVSENTVMWD------ 1776
Query: 639 KSTVKDL--QMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAA 466
VK + Q + D AYWA+KA+GVDF +FWEMQDD+D++R+Y+NNI +ML TYGVEAA
Sbjct: 1777 ---VKQIKNQSQDTDSAYWALKAAGVDFGTFWEMQDDIDVNRIYTNNIRSMLNTYGVEAA 1833
Query: 465 RATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFET 286
RA IIREVK VF IYGV+ID+RHLSLIADYMTH GGY+PM+RHGSI+ESLSPF+KMSFET
Sbjct: 1834 RAAIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFET 1893
Query: 285 ASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
ASKFIVEAASHG+TDNLETPSSRICLGLPVKMGTGCFD+MQKL++
Sbjct: 1894 ASKFIVEAASHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1938
>ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
sylvestris]
Length = 1681
Score = 1356 bits (3510), Expect = 0.0
Identities = 676/892 (75%), Positives = 774/892 (86%), Gaps = 12/892 (1%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIGVPPYFALRLTYPERVTPWN+ K+R
Sbjct: 435 EKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGVPPYFALRLTYPERVTPWNAGKMR 494
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSN-----KKMRIAISRKLPSSRGVVTQSGKKNEY 3506
++IINGP+ HPGA ++ D++STVKLPS KK+R+AISRKLPSSRG VTQSG+ +EY
Sbjct: 495 DSIINGPENHPGALSFADRISTVKLPSGNGKNIKKIRMAISRKLPSSRGAVTQSGRNDEY 554
Query: 3505 EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDG 3326
EFEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDG
Sbjct: 555 EFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 614
Query: 3325 DEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRD 3146
DE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIV AVLLTMK+TFLT
Sbjct: 615 DEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFLTLQ 674
Query: 3145 EFNQLLYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALL 2966
EFNQLLYGSGVFA PGS GN+S KVS VDSEGV+Q++LPAVWKP PLWTGKQVITALL
Sbjct: 675 EFNQLLYGSGVFAAGPGSTSGNHSNKVSVVDSEGVVQTILPAVWKPKPLWTGKQVITALL 734
Query: 2965 NHITRGCAPCTVKNQGKLPKDYFTDST----YKNEDEEDRDQNAEHKLLIWKNELVRGVI 2798
NH+T+G PCTVKN+GK+P YF + Y++ +EE+ D+ AE+K LIWKNELVRGVI
Sbjct: 735 NHLTKGSPPCTVKNKGKIPYPYFLSQSRLAEYQSREEEE-DRTAENKFLIWKNELVRGVI 793
Query: 2797 DKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEER 2618
DKAQFGKFGLVHT+QELYG+N AGI LSALSRLFTIFLQ+HGFTCG+DDL+ILP+YD R
Sbjct: 794 DKAQFGKFGLVHTIQELYGANRAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRR 853
Query: 2617 KEKLEGEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDK 2438
KE+LEG DVGE+ HC+FVKFK G+IGP ELQLEIEK I N+E+ATA+LDMKMKNKL +K
Sbjct: 854 KEELEGGDVGEDAHCDFVKFKPGEIGPLELQLEIEKAISGNKEAATAALDMKMKNKLANK 913
Query: 2437 GSQISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 2258
GSQ +K+LL KGLLKPFP+NCI++MT TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG
Sbjct: 914 GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 973
Query: 2257 KTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 2078
KTLPCF PWDF SRAGG+++DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL
Sbjct: 974 KTLPCFPPWDFASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1033
Query: 2077 IKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNK 1898
IKNLESLKV YDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKAL DNQETIC+K +
Sbjct: 1034 IKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKDNQETICQKLRQG 1093
Query: 1897 REFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKAT 1718
R+ N+YIE+LPDGLE++ + F K+T +++K EK + K++E K
Sbjct: 1094 RKLNSYIERLPDGLEEKVKQF---WGKKTKKLEKKLEK-------RVKKEEIS----KQL 1139
Query: 1717 EKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGI 1538
+KE+ +FLEL+ QKY SSLA SGEPVGV+A QS+GEPSTQMTLNTFHLAGRGEMNVTLGI
Sbjct: 1140 KKEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1199
Query: 1537 PRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVE---LSI 1367
PRLQEILMTASD IKTPI+TCPF+ ++ K D L++ VKK+++AD+ ESMEV LSI
Sbjct: 1200 PRLQEILMTASDAIKTPIMTCPFLGWKSKDDAQSLLAEVKKITVADMIESMEVNLLPLSI 1259
Query: 1366 NDQQVARIYKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
+ QV+++YKL + LK EFVS ED TL+ FLRELEDAIE+H+ LS++
Sbjct: 1260 YNHQVSQLYKLTVKLKEHEFVSSEDCDYTLKYVFLRELEDAIESHLALLSKI 1311
Score = 414 bits (1065), Expect = e-112
Identities = 214/343 (62%), Positives = 260/343 (75%), Gaps = 1/343 (0%)
Frame = -3
Query: 1176 DERGE-DLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKD 1000
DER E DL SD QKRKQQ+TDEMDY E +SDQ H E+ NR +
Sbjct: 1351 DERTEEDLSSDAQKRKQQTTDEMDYDDGPEDEASEAETTAEVEDEKSDQAH--EIGNRDE 1408
Query: 999 EETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYIAVKG 820
EET N+E ++ E S K++++ K+T + KK E S K R+++IAV+G
Sbjct: 1409 EETGDHGNEEQTSKLYSEE--SNIKTAKSKTKTTVQQKKKK-ETRSKKDSDRSVFIAVEG 1465
Query: 819 LHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKPK 640
LHFEVHF+F EPH+LLAQ+AQKTAKKVYIK++GKI C+MVKYD E TV+WD+ +
Sbjct: 1466 LHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNAGKIDQCRMVKYDVSENTVMWDEKQTKN 1525
Query: 639 KSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAARA 460
+S + D AYWA+KA+GVDF +FWEMQDDLD++R+Y+NNI +ML TYGVEAARA
Sbjct: 1526 QS-------QDTDSAYWALKAAGVDFGTFWEMQDDLDVNRIYTNNIRSMLNTYGVEAARA 1578
Query: 459 TIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETAS 280
IIREVK VF IYGV+ID+RHLSLIADYMTH GGY+PM+RHGSI+ESLSPF+KMSFETAS
Sbjct: 1579 AIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETAS 1638
Query: 279 KFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
KFIVEAASHG+TDNLETPSSRICLGLPVKMGTGCFD+MQKL++
Sbjct: 1639 KFIVEAASHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1681
>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Solanum
lycopersicum]
Length = 1677
Score = 1349 bits (3491), Expect = 0.0
Identities = 666/887 (75%), Positives = 768/887 (86%), Gaps = 7/887 (0%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYL+VNEIG+PPYFA RLTYPER+TPWN+VK+R
Sbjct: 434 EKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMR 493
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
+A+INGP+ HPGA ++ D+++TVKLPSNKKMR+AISRKLPSSRG VTQSG+ NEYEFEGK
Sbjct: 494 DAVINGPENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGK 553
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 554 VVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 613
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIV AV+LTMK+TFL+ EFNQL
Sbjct: 614 HFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQL 673
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LYGSGVFA P GN+S KVS VD EGV+Q+VLPAVWKP PLWTGKQVITALLNH+T
Sbjct: 674 LYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTN 733
Query: 2950 GCAPCTVKNQGKLPKDYFTDST----YKNEDEEDRDQNAEHKLLIWKNELVRGVIDKAQF 2783
GC PCTVKN+GK+P YF + Y++ +E++ D+ AE++ LIWKNELVRGVIDKAQF
Sbjct: 734 GCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQE-DRTAENEFLIWKNELVRGVIDKAQF 792
Query: 2782 GKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKLE 2603
GKFGLVHT+QELYGSN AGI LSALSRLFTIFLQ+HGFTCG+DDL+ILP+YD RKE+LE
Sbjct: 793 GKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELE 852
Query: 2602 GEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDKGSQIS 2423
G+DVGEE HC+FVKFKRG+IGP ELQLEIEK I SN+E ATA+LDMKMKNKL +KGSQ +
Sbjct: 853 GDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFN 912
Query: 2422 KKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 2243
K+LL KGLLKPFP+NCI++MT TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC
Sbjct: 913 KELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 972
Query: 2242 FSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 2063
F WD SRAGG+++DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE
Sbjct: 973 FPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1032
Query: 2062 SLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFNT 1883
SLKV YDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKAL +NQETIC+K ++ + N+
Sbjct: 1033 SLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNS 1092
Query: 1882 YIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQN 1703
YIEKLPDGL ++ +HF + T+K G K++E K ++E+
Sbjct: 1093 YIEKLPDGLGEKVKHF----------WESKTKKLEKKLGMLVKKEEMV----KQLKEEEA 1138
Query: 1702 EFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1523
+FLEL+ QKY SSLA SGEPVGV+A QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1139 DFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1198
Query: 1522 ILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVE---LSINDQQV 1352
ILMTAS+ IKTPI+TCPF+ ++ K D L++ VKK+++AD+ ESMEV+ LSI + QV
Sbjct: 1199 ILMTASEAIKTPIMTCPFLGWKSKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQV 1258
Query: 1351 ARIYKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
+++YKL + LK +FVS ED TL+ FLRELEDAIE+H+ LS++
Sbjct: 1259 SQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIESHLALLSKI 1305
Score = 416 bits (1068), Expect = e-112
Identities = 209/343 (60%), Positives = 262/343 (76%), Gaps = 1/343 (0%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDE 997
DER EDL SD QKRKQQ+TDEMDY E +S+Q +E+DN +E
Sbjct: 1345 DERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQT--DEIDNGDEE 1402
Query: 996 ETDSDDNDE-ASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYIAVKG 820
E N+E S +Q+ E S +K+S++ K+T K KK E S K R +++ V+G
Sbjct: 1403 ENGDRGNEEHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKK-ERRSKKDSDRCVFVDVEG 1461
Query: 819 LHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKPK 640
LHFEVHF+F EPH+LLAQ+AQKTAKKVY+K+SGKI C+MVKY+ E TV+WD+++ +
Sbjct: 1462 LHFEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDENQTKQ 1521
Query: 639 KSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAARA 460
Q + D AYWA+KA+GVDF +FWEMQDDLD++R+Y+NNI AML TYGVEAARA
Sbjct: 1522 -------QRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARA 1574
Query: 459 TIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETAS 280
+I+REVK VF IYGV+ID+RHLSLIAD+MTH GGY+PM+RHGSI+ESLSPF+KMSFETAS
Sbjct: 1575 SILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETAS 1634
Query: 279 KFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
KFIVEAA+HG+TDNLETPSSRICLGLPVKMGTGCFD+MQ+L++
Sbjct: 1635 KFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELDI 1677
>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
Length = 1626
Score = 1344 bits (3479), Expect = 0.0
Identities = 672/884 (76%), Positives = 764/884 (86%), Gaps = 4/884 (0%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN+ KLR
Sbjct: 397 EKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNATKLR 456
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
NA++NGPDIHPGATTY+D V+T+KLP NKK R+A+SRKLPSSRG + G+ ++ +FEGK
Sbjct: 457 NAVVNGPDIHPGATTYIDSVATMKLPLNKKARVALSRKLPSSRGATAEVGE-SQLDFEGK 515
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE+TLRMHYANCSSYNADFDGDEINV
Sbjct: 516 VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGERTLRMHYANCSSYNADFDGDEINV 575
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIV+AVLLT+K TFLT EFNQL
Sbjct: 576 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVAAVLLTLKRTFLTCSEFNQL 635
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LYGSGVFA+ S+ N+S+KVS +G++ +LPA+WKP PLWTGKQVI+ALLNHITR
Sbjct: 636 LYGSGVFALGRHSYVSNSSQKVSGHAPDGLINPILPAIWKPEPLWTGKQVISALLNHITR 695
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRDQNAEHKLLIWKNELVRGVIDKAQFGKFG 2771
G APC VKNQ KLP YFTD+ ++ED DQNAE+ L+WKNELVRGVIDKAQFGKFG
Sbjct: 696 GFAPCIVKNQTKLPSTYFTDNPAM--EDEDEDQNAENNFLVWKNELVRGVIDKAQFGKFG 753
Query: 2770 LVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKLEGEDV 2591
LVHTVQELYGS SAG L+A SRLFT+FLQIHGFTCGVDDL+ILP+YD +RKEKLE EDV
Sbjct: 754 LVHTVQELYGSESAGNLLTAFSRLFTMFLQIHGFTCGVDDLMILPDYDVKRKEKLEQEDV 813
Query: 2590 GEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDK----GSQIS 2423
GEEVHC+F+ FK GQIG EELQLEIEK IC +RESATA LDMKMKNKLT K GSQ+
Sbjct: 814 GEEVHCDFINFKPGQIGREELQLEIEKAICRDRESATALLDMKMKNKLTMKLTTEGSQVL 873
Query: 2422 KKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPC 2243
K LLT GLLKPFP+NCISVMTTTGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP
Sbjct: 874 KHLLTDGLLKPFPQNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPS 933
Query: 2242 FSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 2063
F PWDF SRAGGFITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE
Sbjct: 934 FPPWDFASRAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLE 993
Query: 2062 SLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFNT 1883
SLKVGYDYTVRDADGSIIQF YGEDGVD H+TSFLKNFKAL++NQETI +KFQNK +FN
Sbjct: 994 SLKVGYDYTVRDADGSIIQFCYGEDGVDAHKTSFLKNFKALSNNQETIQQKFQNKHQFNF 1053
Query: 1882 YIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQN 1703
YI+KLP+GLE+EA HFI++A+ +S Q + +
Sbjct: 1054 YIKKLPEGLEEEAMHFIQKAQTLSSVKQ---------------------------VVDHH 1086
Query: 1702 EFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1523
+F+ +++QK+LSSL +GEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1087 KFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1146
Query: 1522 ILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVELSINDQQVARI 1343
ILMTAS+ I+TP+LTCPF+Q + KP+ + ++SN+KK++IADL ESM+V +S + +V RI
Sbjct: 1147 ILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKKITIADLIESMDVSISFH-PKVGRI 1205
Query: 1342 YKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
YKL+M LK TEFVSLED + TL+++FL+ELEDA+ENHVVFL +V
Sbjct: 1206 YKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALENHVVFLKKV 1249
Score = 376 bits (965), Expect = e-101
Identities = 198/338 (58%), Positives = 245/338 (72%), Gaps = 2/338 (0%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDEE 994
+ GEDL SDVQKR+QQ+ D+MDY + D D E N K ++
Sbjct: 1291 DAGEDLDSDVQKRRQQARDDMDYEDASDSEQREEEEDLDKANAEEDDDDDENEWNEKCDD 1350
Query: 993 TDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYIAVKGLH 814
D DD D+ S+ +N E ++ A T++ S + K+ RAIY+ ++GL
Sbjct: 1351 -DHDDYDQRSSEKNMVEKPILKGRKKSVAAITSEKIDLSTMPSTGKRENRAIYMEIEGLS 1409
Query: 813 FEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSG-KISHCKMVKYDADEKTVIWDDDKKPKK 637
EVHFKFT EPH+LLAQ+ QKTAKKVY+K +G K++ CK+V+YD DEKTVIWDDDKK +K
Sbjct: 1410 LEVHFKFTSEPHVLLAQVVQKTAKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDDKKKEK 1469
Query: 636 STVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAARAT 457
+T + D +D AYWA+KASG D +SFWEM D LDL+RLY NNI +MLKTYGVEAA AT
Sbjct: 1470 ATKNGRKAD-DDAAYWAVKASGSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAASAT 1528
Query: 456 IIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETASK 277
IIRE+K VFDIYGVKIDYRHLSLI D+M HAGGYRPM+RHGSI +S+SPF+KMSFETASK
Sbjct: 1529 IIREMKNVFDIYGVKIDYRHLSLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFETASK 1588
Query: 276 FIVEAASHGMTDNLETPSSRICLGLPVKMGT-GCFDLM 166
FIVEAA +G+ D+LE+PSSRICLGLPV++GT G FDLM
Sbjct: 1589 FIVEAAIYGLRDDLESPSSRICLGLPVRVGTGGPFDLM 1626
>emb|CDP10074.1| unnamed protein product [Coffea canephora]
Length = 1680
Score = 1330 bits (3443), Expect = 0.0
Identities = 666/888 (75%), Positives = 754/888 (84%), Gaps = 8/888 (0%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWN KLR
Sbjct: 442 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLR 501
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
AI+NGP+IHPGA +Y DKVSTVKLPS+KKMRIAISRKLPSSRGVVTQ GK +E+EFEGK
Sbjct: 502 GAIVNGPEIHPGALSYTDKVSTVKLPSSKKMRIAISRKLPSSRGVVTQLGKNSEHEFEGK 561
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDE+NV
Sbjct: 562 VVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNV 621
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHI SAVLLTMKDTFLT DEFNQL
Sbjct: 622 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIGSAVLLTMKDTFLTYDEFNQL 681
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LYGSGVF N S K+S VDSEG++Q +LPAV KP PLWTGKQVITALLN +T+
Sbjct: 682 LYGSGVFTTGSSCTFSNYSGKISIVDSEGIIQPILPAVLKPKPLWTGKQVITALLNQLTK 741
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYK-----NEDEEDRDQNAEHKLLIWKNELVRGVIDKAQ 2786
GCAPC+++ + K+PK YF TY+ N+D+E+ ++ A++ LL+WKNELVRGVIDKAQ
Sbjct: 742 GCAPCSIEKEMKIPKQYFPTETYEVQQSENDDKENDEKKADNCLLVWKNELVRGVIDKAQ 801
Query: 2785 FGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKL 2606
FG+FGLVH++QELYG+N+AG+ LSALSRLFT+FLQ+HGFTCGV+DLIILP++D RKE+L
Sbjct: 802 FGQFGLVHSIQELYGANTAGLLLSALSRLFTMFLQMHGFTCGVEDLIILPHFDLRRKEEL 861
Query: 2605 EGEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDKGSQI 2426
EGEDVGE+VHC FV FKRGQIGP ELQLEIEKVIC +RE+ATASLDMKMKNKLT K SQI
Sbjct: 862 EGEDVGEDVHCEFVNFKRGQIGPLELQLEIEKVICRDREAATASLDMKMKNKLTKKASQI 921
Query: 2425 SKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLP 2246
SK+LL KGLLKPFPKNCIS+MT +GAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLP
Sbjct: 922 SKELLLKGLLKPFPKNCISLMTISGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLP 981
Query: 2245 CFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 2066
CF PWDFTSRAGG+ITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL
Sbjct: 982 CFPPWDFTSRAGGYITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1041
Query: 2065 ESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFN 1886
ESLKV YDYTVRDADGSI+QFYYGEDGVDVHRTSFLKN +ALA NQ + +K++ +R+FN
Sbjct: 1042 ESLKVCYDYTVRDADGSIVQFYYGEDGVDVHRTSFLKNLRALALNQVPVRQKYERERDFN 1101
Query: 1885 TYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQ 1706
YI +LPDGL+++A F++ ++ H+
Sbjct: 1102 AYIVELPDGLKRKAEGFLKGVNTDS----------HM----------------------- 1128
Query: 1705 NEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1526
+F+ L+ QKYLSSLA SGEPVGVIAAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ
Sbjct: 1129 -DFMTLLAQKYLSSLAPSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1187
Query: 1525 EILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVE---LSINDQQ 1355
EILMTA+ IKTP++TCPF+Q++ D LV+ VKK+++AD+ ESMEV LS+ +
Sbjct: 1188 EILMTAAQVIKTPVMTCPFLQFKSMDDAKSLVAKVKKITVADIIESMEVHLLPLSVLNNG 1247
Query: 1354 VARIYKLKMNLKATEFVSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
+ IYKL M K EF S ED TLR +FLRELEDAI+NH+V LSR+
Sbjct: 1248 IGIIYKLMMTFKHHEFASSEDCKETLRHSFLRELEDAIQNHLVLLSRI 1295
Score = 414 bits (1063), Expect = e-112
Identities = 217/343 (63%), Positives = 253/343 (73%), Gaps = 2/343 (0%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDE 997
D+ EDLGSD QKRKQQ+TDEMDY +G+ Q + +E + R+ +
Sbjct: 1339 DDMAEDLGSDAQKRKQQATDEMDYEDITEDESTADHE-----QGKDGQSN-DEGEIREGK 1392
Query: 996 ETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYIAVKGL 817
E D++ A M++D E S+ KS KST K KK+ ++F K+ R I++ V+G
Sbjct: 1393 EAMDVDDEHAIEMEHDNEEMSKPKSGNKNGKSTLKKRKKAEKKFVRKETDRNIFVEVEGQ 1452
Query: 816 HFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKPKK 637
FE HF FT EPH+LLAQIAQKTAK VYIKSSGKI+ CKMV++D E TVIWD K KK
Sbjct: 1453 KFEAHFGFTNEPHILLAQIAQKTAKHVYIKSSGKINQCKMVEHDVSENTVIWDAKKVDKK 1512
Query: 636 STVKDLQMDNED--LAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAAR 463
K N D L YWA+KA+GVDF FWEMQDDLD +R+YSN+I AML+TYGVEAAR
Sbjct: 1513 IKAKKQMKANVDDLLPYWALKAAGVDFIPFWEMQDDLDTARIYSNSIHAMLETYGVEAAR 1572
Query: 462 ATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETA 283
ATIIREV VF IYGV+IDYRHLSLIADYMTH+GGYRPM+RHGSIAESLSP KMSFETA
Sbjct: 1573 ATIIREVTNVFGIYGVQIDYRHLSLIADYMTHSGGYRPMSRHGSIAESLSPLAKMSFETA 1632
Query: 282 SKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLE 154
KFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQ+L+
Sbjct: 1633 GKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQQLD 1675
>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
vinifera]
Length = 1691
Score = 1209 bits (3127), Expect = 0.0
Identities = 613/905 (67%), Positives = 719/905 (79%), Gaps = 25/905 (2%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPE+VTPWN VKLR
Sbjct: 449 EKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLR 508
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
+AIINGP+IHPGAT YVDK+STVKL NKKMRI+ISRKLPSSRGVV Q G+ ++ EFEGK
Sbjct: 509 DAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGK 568
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 569 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 628
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLIQDHIVSAVLLT KDTFLTR+++NQL
Sbjct: 629 HFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQL 688
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SG+ + GS G +KVS +DSE MQ +LPA+WKP PLW+GKQVITA+LNHITR
Sbjct: 689 LYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITR 747
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRD-------------QNAEHKLLIWKNELV 2810
G P T + GK+P++YF + + + +D ++ E+KLLI KNELV
Sbjct: 748 GRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELV 807
Query: 2809 RGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNY 2630
RGVIDKAQF K+GLVH VQELYGSN+AGI LS LSRLFT+FLQ+HGFTCGVDDL+I PNY
Sbjct: 808 RGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNY 867
Query: 2629 DEERKEKLE-GEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKN 2453
D RK +L+ E++GE VHC F+ G+I P +LQ+E+EK+I SN E+A LD MKN
Sbjct: 868 DIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKN 927
Query: 2452 KLTDKGSQISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVP 2273
+L + S+++K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QISS+LGQQ+LEGKRVP
Sbjct: 928 ELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVP 987
Query: 2272 RMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 2093
RMVSGKTLPCF PWD +RAGGFI+DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 988 RMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGY 1047
Query: 2092 LQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICR 1913
LQRCLIKNLE LKV YDYTVRD+DGSI+QF YG+DGVDVH+TSF+ F+ALA N+E +C
Sbjct: 1048 LQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCE 1107
Query: 1912 KFQNKREFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLE 1733
KF +FN YI+KLP L K+ + FI E +E
Sbjct: 1108 KFGQDGKFNGYIQKLPKELRKKTKKFI----------------------------EGFME 1139
Query: 1732 ERKATE--KEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGE 1559
ER+ + K+Q +F+ L+KQKY+SSLAQ GEPVGV+AAQS+GEPSTQMTLNTFHLAGRGE
Sbjct: 1140 ERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE 1199
Query: 1558 MNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEV 1379
+NVTLGIPRLQEILMTA++ IKTPI+TCP R K D L + +KKV++AD+ ESMEV
Sbjct: 1200 VNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEV 1259
Query: 1378 EL---SINDQQVARIYKLKMNLKATEF------VSLEDLHATLRSTFLRELEDAIENHVV 1226
+ ++ D Q IYKLKM L +SLED TL + F+RELEDAI+NH++
Sbjct: 1260 SIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLL 1319
Query: 1225 FLSRV 1211
LS++
Sbjct: 1320 LLSKI 1324
Score = 338 bits (866), Expect = 3e-89
Identities = 185/344 (53%), Positives = 232/344 (67%), Gaps = 2/344 (0%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDE 997
D EDLG D QKRKQQ++DEMDY +G+ EE+D +DE
Sbjct: 1365 DGGAEDLGLDAQKRKQQASDEMDYGDSEGEPD----------EGEPSAGLTEEIDLVEDE 1414
Query: 996 ETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPR--RAIYIAVK 823
S++ + + D ++K SKS + K AKT K + F K RAI + K
Sbjct: 1415 VEISNNEEVGISDPKDEDSKVPSKSKSSKNKK-AKTEAKRKKRFRAIKKDFDRAILVKAK 1473
Query: 822 GLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKP 643
G +FEVHF+FT EPH+LLAQIAQK A KVYI+SSGKI C+++ + D+ D KK
Sbjct: 1474 GTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKR 1533
Query: 642 KKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAAR 463
+ E A++ +GVDF +FW+MQD+LD+ +YSNN+ AML T+GVEAAR
Sbjct: 1534 ENIP------GEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAAR 1587
Query: 462 ATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETA 283
ATII+EV VF+ YGVK++ RHLSLIAD+MTH+GGYRPM RHG IAES+SPF KM+FETA
Sbjct: 1588 ATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETA 1647
Query: 282 SKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
SKFIVEAASHGMTDNLE+ S+RICLGLPVKMGTGCFDLMQK+E+
Sbjct: 1648 SKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1691
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 1209 bits (3127), Expect = 0.0
Identities = 613/905 (67%), Positives = 719/905 (79%), Gaps = 25/905 (2%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPE+VTPWN VKLR
Sbjct: 427 EKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLR 486
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
+AIINGP+IHPGAT YVDK+STVKL NKKMRI+ISRKLPSSRGVV Q G+ ++ EFEGK
Sbjct: 487 DAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGK 546
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 547 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 606
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLIQDHIVSAVLLT KDTFLTR+++NQL
Sbjct: 607 HFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQL 666
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SG+ + GS G +KVS +DSE MQ +LPA+WKP PLW+GKQVITA+LNHITR
Sbjct: 667 LYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITR 725
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRD-------------QNAEHKLLIWKNELV 2810
G P T + GK+P++YF + + + +D ++ E+KLLI KNELV
Sbjct: 726 GRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELV 785
Query: 2809 RGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNY 2630
RGVIDKAQF K+GLVH VQELYGSN+AGI LS LSRLFT+FLQ+HGFTCGVDDL+I PNY
Sbjct: 786 RGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNY 845
Query: 2629 DEERKEKLE-GEDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKN 2453
D RK +L+ E++GE VHC F+ G+I P +LQ+E+EK+I SN E+A LD MKN
Sbjct: 846 DIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKN 905
Query: 2452 KLTDKGSQISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVP 2273
+L + S+++K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QISS+LGQQ+LEGKRVP
Sbjct: 906 ELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVP 965
Query: 2272 RMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 2093
RMVSGKTLPCF PWD +RAGGFI+DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 966 RMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGY 1025
Query: 2092 LQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICR 1913
LQRCLIKNLE LKV YDYTVRD+DGSI+QF YG+DGVDVH+TSF+ F+ALA N+E +C
Sbjct: 1026 LQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCE 1085
Query: 1912 KFQNKREFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLE 1733
KF +FN YI+KLP L K+ + FI E +E
Sbjct: 1086 KFGQDGKFNGYIQKLPKELRKKTKKFI----------------------------EGFME 1117
Query: 1732 ERKATE--KEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGE 1559
ER+ + K+Q +F+ L+KQKY+SSLAQ GEPVGV+AAQS+GEPSTQMTLNTFHLAGRGE
Sbjct: 1118 ERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE 1177
Query: 1558 MNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEV 1379
+NVTLGIPRLQEILMTA++ IKTPI+TCP R K D L + +KKV++AD+ ESMEV
Sbjct: 1178 VNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEV 1237
Query: 1378 EL---SINDQQVARIYKLKMNLKATEF------VSLEDLHATLRSTFLRELEDAIENHVV 1226
+ ++ D Q IYKLKM L +SLED TL + F+RELEDAI+NH++
Sbjct: 1238 SIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLL 1297
Query: 1225 FLSRV 1211
LS++
Sbjct: 1298 LLSKI 1302
Score = 338 bits (866), Expect = 3e-89
Identities = 185/344 (53%), Positives = 232/344 (67%), Gaps = 2/344 (0%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDE 997
D EDLG D QKRKQQ++DEMDY +G+ EE+D +DE
Sbjct: 1343 DGGAEDLGLDAQKRKQQASDEMDYGDSEGEPD----------EGEPSAGLTEEIDLVEDE 1392
Query: 996 ETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPR--RAIYIAVK 823
S++ + + D ++K SKS + K AKT K + F K RAI + K
Sbjct: 1393 VEISNNEEVGISDPKDEDSKVPSKSKSSKNKK-AKTEAKRKKRFRAIKKDFDRAILVKAK 1451
Query: 822 GLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDDKKP 643
G +FEVHF+FT EPH+LLAQIAQK A KVYI+SSGKI C+++ + D+ D KK
Sbjct: 1452 GTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKR 1511
Query: 642 KKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVEAAR 463
+ E A++ +GVDF +FW+MQD+LD+ +YSNN+ AML T+GVEAAR
Sbjct: 1512 ENIP------GEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAAR 1565
Query: 462 ATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSFETA 283
ATII+EV VF+ YGVK++ RHLSLIAD+MTH+GGYRPM RHG IAES+SPF KM+FETA
Sbjct: 1566 ATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETA 1625
Query: 282 SKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
SKFIVEAASHGMTDNLE+ S+RICLGLPVKMGTGCFDLMQK+E+
Sbjct: 1626 SKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1669
>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
Length = 1350
Score = 1131 bits (2926), Expect = 0.0
Identities = 575/834 (68%), Positives = 664/834 (79%), Gaps = 34/834 (4%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPE+VTPWN VKLR
Sbjct: 546 EKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLR 605
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
+AIINGP+IHPGAT YVDK+STVKL NKKMRI+ISRKLPSSRGVV Q G+ ++ EFEGK
Sbjct: 606 DAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGK 665
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC-------------- 3353
IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC
Sbjct: 666 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHISMLDLDD 725
Query: 3352 ----SSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSA 3185
S+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLIQDHIVSA
Sbjct: 726 CSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSA 785
Query: 3184 VLLTMKDTFLTRDEFNQLLYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPG 3005
VLLT KDTFLTR+++NQLLY SG+ + GS G +KVS +DSE MQ +LPA+WKP
Sbjct: 786 VLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPE 844
Query: 3004 PLWTGKQVITALLNHITRGCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRD---------- 2855
PLW+GKQVITA+LNHITRG P T + GK+P++YF + + + +D
Sbjct: 845 PLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKR 904
Query: 2854 ---QNAEHKLLIWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFL 2684
++ E+KLLI KNELVRGVIDKAQF K+GLVH VQELYGSN+AGI LS LSRLFT+FL
Sbjct: 905 IEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFL 964
Query: 2683 QIHGFTCGVDDLIILPNYDEERKEKLE-GEDVGEEVHCNFVKFKRGQIGPEELQLEIEKV 2507
Q+HGFTCGVDDL+I PNYD RK +L+ E++GE VHC F+ G+I P +LQ+E+EK+
Sbjct: 965 QMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKI 1024
Query: 2506 ICSNRESATASLDMKMKNKLTDKGSQISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNF 2327
I SN E+A LD MKN+L + S+++K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF
Sbjct: 1025 ILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNF 1084
Query: 2326 QQISSYLGQQELEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCM 2147
QISS+LGQQ+LEGKRVPRMVSGKTLPCF PWD +RAGGFI+DRFLTGL PQEYYFHCM
Sbjct: 1085 SQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCM 1144
Query: 2146 AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRT 1967
AGREGLVDTAVKTSRSGYLQRCLIKNLE LKV YDYTVRD+DGSI+QF YG+DGVDVH+T
Sbjct: 1145 AGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQT 1204
Query: 1966 SFLKNFKALADNQETICRKFQNKREFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTE 1787
SF+ F+ALA NQE +C KF +FN YI+KLP L K+ + FI
Sbjct: 1205 SFITEFEALAVNQEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFI--------------- 1249
Query: 1786 KEHLPKGRKAKRKENQLEERKATE--KEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIG 1613
E +EER+ + K+Q +F+ L+KQKY+SSLAQ GEPVGV+AAQS+G
Sbjct: 1250 -------------EGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVG 1296
Query: 1612 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFK 1451
EPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+TCP R K
Sbjct: 1297 EPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSK 1350
>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
nucifera]
Length = 1676
Score = 1130 bits (2924), Expect = 0.0
Identities = 577/895 (64%), Positives = 690/895 (77%), Gaps = 15/895 (1%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEGIFRQKMMGKRVN+ACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN KLR
Sbjct: 459 EKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLR 518
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
+AIING + HPGAT YVDK++TVKLP ++KMR++ISRKLPSSRG VTQ GK EYEFEGK
Sbjct: 519 DAIINGAEHHPGATHYVDKLATVKLPPSRKMRMSISRKLPSSRGAVTQPGKNLEYEFEGK 578
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NV
Sbjct: 579 VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNV 638
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEA+NIVNAN+QY+VPT G +RGLIQDHI+SAVLLT +DTFLTRDEF+QL
Sbjct: 639 HFPQDEISRAEAFNIVNANKQYVVPTSGQPIRGLIQDHIISAVLLTKRDTFLTRDEFSQL 698
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV A G G +K+S ++SE ++ VLPA+WKP PLWTGKQVITA+LNHITR
Sbjct: 699 LYSSGVSATALGYFVGKPGQKISTINSEEELEPVLPAIWKPEPLWTGKQVITAVLNHITR 758
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRDQNAEHKLLIWKNELVRGVIDKAQFGKFG 2771
G P +V+ GK P++YF + + E++LLI KNELV GVIDKAQFG +G
Sbjct: 759 GRTPFSVRKAGKTPEEYFGKT------------SGEYELLIHKNELVHGVIDKAQFGGYG 806
Query: 2770 LVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEERKEKLE-GED 2594
LVHTVQELYGSN+AG+ LS LSRLFTIFLQ+HGFTCG+DDL+I+ YD ER +KL+ E
Sbjct: 807 LVHTVQELYGSNAAGVLLSVLSRLFTIFLQMHGFTCGIDDLLIVHRYDLERMKKLDKNEQ 866
Query: 2593 VGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASLDMKMKNKLTDKGSQISKKL 2414
+GE H FV G P +LQ+EIEK I N +SA LD +M + S+++K L
Sbjct: 867 IGEFEHWQFVGCADGDKDPIKLQVEIEKAIRRNGDSAVTRLDRRMSGAMNKLTSEVNKNL 926
Query: 2413 LTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFSP 2234
+GL KPFPKNC+S+MT TGAKG VN QI S LGQQELEGKRVPRMVSGKTLPCF P
Sbjct: 927 FPEGLCKPFPKNCLSLMTATGAKGGMVNSTQICSLLGQQELEGKRVPRMVSGKTLPCFPP 986
Query: 2233 WDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK 2054
WD SRAGGFI+DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK
Sbjct: 987 WDPASRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLEGLK 1046
Query: 2053 VGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICRKFQNKREFNT--- 1883
V YDYTVRDADGS++QF YGEDG+DVH+TSFL+ F+ALA N + +F N+ +
Sbjct: 1047 VCYDYTVRDADGSVVQFIYGEDGIDVHKTSFLEEFEALAANHRIVQERFNNQLDSEVLFK 1106
Query: 1882 --YIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQLEERKATEKE 1709
YI+KLP LE +A+ +I K+ K K L +RK
Sbjct: 1107 YDYIKKLPVALEGKAKDYIDTLSKK-------------------KLKSLNLRKRK----- 1142
Query: 1708 QNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1529
+F++L++ KY+SSLAQ GEPVGV+AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1143 --DFMKLMRSKYISSLAQPGEPVGVVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRL 1200
Query: 1528 QEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESME---VELSINDQ 1358
QEILM AS+ I+TP++TCP + + + D L + ++KV++AD+ ESME V S+
Sbjct: 1201 QEILMRASEKIQTPVMTCPLRKGKTEDDAKRLAAKLQKVTVADVIESMEVGVVPFSVKKH 1260
Query: 1357 QVARIYKLKMNLKATEF------VSLEDLHATLRSTFLRELEDAIENHVVFLSRV 1211
QV+ +YKLK+ L E ++L+D ATL+ F+ E+EDAI++H++ LS++
Sbjct: 1261 QVSTVYKLKLKLYPPELYPPYSGITLKDCQATLKFVFVGEMEDAIQSHLLMLSKI 1315
Score = 302 bits (774), Expect = 1e-78
Identities = 176/347 (50%), Positives = 223/347 (64%), Gaps = 6/347 (1%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKG----QSDQDHLE-EVDN 1009
E +DLG+D QKRK+Q+TDEMDY + +S+ D E E N
Sbjct: 1358 EAPDDLGADAQKRKRQATDEMDYEDDMENEIVNTENGRSDIEASAGFESEIDQAEVEAGN 1417
Query: 1008 RKDEETDS-DDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIYI 832
D E D DEAS + T S+SKSS ++ A+ + ++ SD RA ++
Sbjct: 1418 IMDGEIQVFDAEDEASQTPSQHGTVSKSKSSGGKDEADARGMTRRTKKDSD----RAFFM 1473
Query: 831 AVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDDD 652
+GL FEVHF+FT EPH+LLAQIAQKTAK VY+K SG I C +V
Sbjct: 1474 VAEGLDFEVHFRFTNEPHILLAQIAQKTAKNVYVKRSGNIELCSVVV------------- 1520
Query: 651 KKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGVE 472
PKK+ D + + +L + SGVDF +FW MQDDLD+ RL SN+I A+L TYGVE
Sbjct: 1521 --PKKA---DGEPEIPEL-----QTSGVDFPTFWNMQDDLDIRRLKSNDIHAVLNTYGVE 1570
Query: 471 AARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMSF 292
AARATII +V QVF YG+ ++ RHLSLIAD+MT GGYRPM+R G IAE++SPF KMS+
Sbjct: 1571 AARATIIEQVNQVFKSYGIAVNIRHLSLIADFMTQTGGYRPMSRFG-IAETISPFSKMSY 1629
Query: 291 ETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
ETAS+F++EAA HG DNLE+PS+RICLGLPVKMGTGCFDLMQK+ +
Sbjct: 1630 ETASRFVIEAAYHGEMDNLESPSARICLGLPVKMGTGCFDLMQKINI 1676
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus communis]
Length = 1686
Score = 1116 bits (2886), Expect = 0.0
Identities = 586/904 (64%), Positives = 697/904 (77%), Gaps = 24/904 (2%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVN+ACRSVISPDPY+ VNEIG+PP FA++LTYPERVTPWN KLR
Sbjct: 426 EKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLR 485
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
NA+ING + HPGAT YVDK+S KLP +K RI+ISRKLPSSRG VTQ+GK +E EFEGK
Sbjct: 486 NAVINGSECHPGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGK 545
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-SYNADFDGDEIN 3314
IVYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS +YNADFDGDE+N
Sbjct: 546 IVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMN 605
Query: 3313 VHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQ 3134
VHFPQDE+SRAEAYNIVNAN Q++ P+ G+ +RGLIQDHIVSAVLLT KDTFL++DEFNQ
Sbjct: 606 VHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQ 665
Query: 3133 LLYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHIT 2954
LLY SGV + P S G +KV + SE +Q++ PA+WKP PLWTGKQVITA+LNHIT
Sbjct: 666 LLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHIT 725
Query: 2953 RGCAPCTVKNQGKLPKDYFTDSTYKN----EDEEDRDQNAE-----HKLLIWKNELVRGV 2801
P TV+ K+P ++F ++ E++ D+D AE K+L++KNELVRGV
Sbjct: 726 SDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGV 785
Query: 2800 IDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDLIILPNYDEE 2621
IDK QFG++GLVHTV EL GS++AGI LS LSRLFT +LQ+HGFTCGVDDL+IL N DEE
Sbjct: 786 IDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEE 845
Query: 2620 RKEKLEG-EDVGEEVHCNFVKFK--RGQIGPEELQLEIEKVICSNRESATASLDMKMKNK 2450
RK++LE E GE VH NF+ K + +I P +QL IEK I S+ +SA A LD +M N+
Sbjct: 846 RKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNE 905
Query: 2449 LTDKGSQ-ISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQELEGKRVP 2273
L K S + LL+ GLLKP KNCIS+MTT+GAKGS VNFQQISS+LGQQELEGKRVP
Sbjct: 906 LNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVP 965
Query: 2272 RMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 2093
RMVSGKTLPCF PWD+ +R+GG+ITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 966 RMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1025
Query: 2092 LQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALADNQETICR 1913
LQRCLIKNLE LK+GYD+TVRDADGS++QFYYGEDGVDVH+TSF+ FK LA NQ+ I +
Sbjct: 1026 LQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYK 1085
Query: 1912 KFQNK-REFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKAKRKENQL 1736
+ + FN+YI +LP+ L+++A F+ + GR A + L
Sbjct: 1086 RSGGQLGAFNSYISELPEALKEKADRFL---------------DDFSIMGRIA----SNL 1126
Query: 1735 EERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEM 1556
+R+ + L+KQK+L SLAQ GEPVGV+AAQS+GEPSTQMTLNTFHLAGRGEM
Sbjct: 1127 VKRE-------DLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 1179
Query: 1555 NVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADLAESMEVE 1376
NVTLGIPRLQEILMTAS IKTPI+TCP + R D +L ++KV++AD+ ESMEV
Sbjct: 1180 NVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADIVESMEVS 1239
Query: 1375 L---SINDQQVARIYKLKMNLKATEF------VSLEDLHATLRSTFLRELEDAIENHVVF 1223
+ +I D V RIYKLKM L +S+ED TL FLRELEDAI+NH+
Sbjct: 1240 VVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFL 1299
Query: 1222 LSRV 1211
LSR+
Sbjct: 1300 LSRI 1303
Score = 328 bits (842), Expect = 2e-86
Identities = 188/355 (52%), Positives = 233/355 (65%), Gaps = 14/355 (3%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEVDNRKDEE 994
ER +DLG D QKRK Q+TDEMDY E+ + + +++ DN +
Sbjct: 1345 ERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFESE-IDQGDNETEIS 1403
Query: 993 TDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPR----------- 847
D ++EAS ET K S+ +K A + GE+ DKK +
Sbjct: 1404 NDVMLDNEAS------ETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISK 1457
Query: 846 ---RAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADE 676
RAI++ + +HFEVHFKFT EPH+LLA+IAQKTAKKVYI++ GKI C++ D E
Sbjct: 1458 DFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVT--DCKE 1515
Query: 675 KTVIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDA 496
VI+ K PK+ DL+ D ++ A+ A+GVDF +FW+MQD LD+ +YSNNI A
Sbjct: 1516 SQVIYYG-KDPKERV--DLKPDVKEKVP-ALHATGVDFNTFWKMQDHLDVRYIYSNNIHA 1571
Query: 495 MLKTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESL 316
MLKTYGVEAAR TIIRE+ VF YG+ + RHLSLIAD+MTH GGYRPM+R G IAES+
Sbjct: 1572 MLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESI 1631
Query: 315 SPFIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
SPF KMSFETASKFIVEAA HG DNLETPS+RICLGLPVKMGTG FDLMQKLE+
Sbjct: 1632 SPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686
>ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha
curcas]
Length = 1741
Score = 1100 bits (2844), Expect = 0.0
Identities = 578/929 (62%), Positives = 692/929 (74%), Gaps = 49/929 (5%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVN+ACRSVISPDPYL VNEIG+PP FA++LTYPERVTPWN KLR
Sbjct: 424 EKKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERVTPWNVAKLR 483
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
NA+ NG + HPGAT YVDK+ST KLP +KMRIAISRKLPSSRG + Q GK ++ E+EGK
Sbjct: 484 NAVFNGSESHPGATHYVDKLSTNKLPVARKMRIAISRKLPSSRGAIMQPGKSSDCEYEGK 543
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IVYRHLQDGD+VL NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 544 IVYRHLQDGDVVLCNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 603
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDE+SRAEAY IVNAN QY+ P+ G+ +RGLIQDHI+S+VLLT KDTFL++DEFNQL
Sbjct: 604 HFPQDELSRAEAYGIVNANNQYVRPSNGEPLRGLIQDHIISSVLLTKKDTFLSQDEFNQL 663
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV S G +KV + SE +Q++ PA+WKP PLWTGKQVI+A+LNHITR
Sbjct: 664 LYSSGVSTAGSTSFHGRPGQKVLWSRSEDEIQTLPPAIWKPEPLWTGKQVISAVLNHITR 723
Query: 2950 GCAPCTVKNQGKLPKDYFTD--STYK----------------------NEDEEDR-DQNA 2846
G P TV+ + K+P ++F YK NED++ + D+N
Sbjct: 724 GHPPFTVEKEAKIPTNFFNSRAKEYKPCDGKKSDEDKKQKSDVKEKRFNEDKQKKPDKNT 783
Query: 2845 EHK-------LLIWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIF 2687
K +LI++NELVRGVIDKAQFG++GLVHTV EL+GSN+AG+ LSALSRLFT +
Sbjct: 784 PQKKEPDEEIMLIYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGVLLSALSRLFTAY 843
Query: 2686 LQIHGFTCGVDDLIILPNYDEERKEKLEG-EDVGEEVHCNFVKFKRG--QIGPEELQLEI 2516
LQ+HGFTCGVDDL+I+ + D+ERK+ LE E GE VH NF+ K +I P ELQL I
Sbjct: 844 LQMHGFTCGVDDLLIMESIDDERKKLLESCERSGEAVHRNFIGIKDESIEIDPVELQLNI 903
Query: 2515 EKVICSNRESATASLDMKMKNKLTDK-GSQISKKLLTKGLLKPFPKNCISVMTTTGAKGS 2339
E+ I S+ +SA + LD +M N+L K S + KLL+ GLLKP KNCIS+MTT+GAKGS
Sbjct: 904 ERTIRSDGDSALSYLDRQMSNELNTKTSSGVINKLLSDGLLKPSGKNCISLMTTSGAKGS 963
Query: 2338 TVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYY 2159
VNFQQISS+LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGG+I DRFLTGLRPQEYY
Sbjct: 964 KVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYY 1023
Query: 2158 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVD 1979
FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGS++QFYYGEDGVD
Sbjct: 1024 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSVVQFYYGEDGVD 1083
Query: 1978 VHRTSFLKNFKALADNQETICRKFQNKR-EFNTYIEKLPDGLEKEARHFIRE---ARKET 1811
VHRTSF+ F+ LA NQ+ I ++ N+ FN+Y+ +LP L ++A F+ + + T
Sbjct: 1084 VHRTSFIAKFEQLAMNQDMIYKQCGNQLVTFNSYVSELPKALSEKAAKFLDDFSLMGRVT 1143
Query: 1810 SEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVI 1631
S + K + L+KQK+L SLAQ GEPVGV+
Sbjct: 1144 SNLVK-----------------------------HEDLYNLMKQKFLLSLAQPGEPVGVL 1174
Query: 1630 AAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFK 1451
AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+ IKTPI+TCP + R K
Sbjct: 1175 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAASNIKTPIITCPLQKGRTK 1234
Query: 1450 PDVMYLVSNVKKVSIADLAESMEVEL---SINDQQVARIYKLKMNLKATEF------VSL 1298
D L +KKVS+AD+ ESMEV + +I + RIYKLKM L VS+
Sbjct: 1235 EDAERLADKLKKVSVADIVESMEVSVLPFAIQGDGICRIYKLKMKLYRPVHYPQYADVSV 1294
Query: 1297 EDLHATLRSTFLRELEDAIENHVVFLSRV 1211
ED L F+R+LEDAI++H++ LSR+
Sbjct: 1295 EDWEEILEVDFVRDLEDAIQSHIILLSRI 1323
Score = 329 bits (844), Expect = 9e-87
Identities = 180/356 (50%), Positives = 230/356 (64%), Gaps = 15/356 (4%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEE-------- 1018
ER EDLG D QKRK Q+TDEMDY +S+ D +
Sbjct: 1395 ERAEDLGLDAQKRKVQATDEMDYDDGIEELNERESTASEESGFESEIDQGDNETETGKDA 1454
Query: 1017 -VDNRKDEE------TDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSD 859
+DN+ E + S D+A+ + ET S++KS + +T++ + S
Sbjct: 1455 MLDNKASETPLLRKASKSKSKDKATESPSQGETHSKAKSRNKKKQKAKRTHRP---KLSK 1511
Query: 858 KKPRRAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDAD 679
K+ RAI++ + +HFEVHFKFT EPH+LLA+IAQKTAKKVYI++ G+I C++
Sbjct: 1512 KEYDRAIFVEARDMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGRIERCRLTT--CK 1569
Query: 678 EKTVIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNID 499
E VI+ D K+ + + +N A++A+G+DF +FW+M D LD+ +YSNNI
Sbjct: 1570 ENQVIYYGDDPKKRVDISAKEKENVP----ALEATGLDFSTFWKMHDHLDIRYIYSNNIT 1625
Query: 498 AMLKTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAES 319
AML TYGVEAAR TIIRE+ VF YG+ + RHLSLIAD+MTH+GGYRPM R G IAES
Sbjct: 1626 AMLTTYGVEAARETIIREINHVFKSYGISVSTRHLSLIADFMTHSGGYRPMNRFGGIAES 1685
Query: 318 LSPFIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
+SPF KMSFETASKFIVEAA HG TDNLETPS+RICLGLPVKMGTG FDLMQKLE+
Sbjct: 1686 ISPFSKMSFETASKFIVEAALHGETDNLETPSARICLGLPVKMGTGAFDLMQKLEI 1741
>gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]
Length = 1526
Score = 1100 bits (2844), Expect = 0.0
Identities = 578/929 (62%), Positives = 692/929 (74%), Gaps = 49/929 (5%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVN+ACRSVISPDPYL VNEIG+PP FA++LTYPERVTPWN KLR
Sbjct: 209 EKKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERVTPWNVAKLR 268
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
NA+ NG + HPGAT YVDK+ST KLP +KMRIAISRKLPSSRG + Q GK ++ E+EGK
Sbjct: 269 NAVFNGSESHPGATHYVDKLSTNKLPVARKMRIAISRKLPSSRGAIMQPGKSSDCEYEGK 328
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IVYRHLQDGD+VL NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 329 IVYRHLQDGDVVLCNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 388
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDE+SRAEAY IVNAN QY+ P+ G+ +RGLIQDHI+S+VLLT KDTFL++DEFNQL
Sbjct: 389 HFPQDELSRAEAYGIVNANNQYVRPSNGEPLRGLIQDHIISSVLLTKKDTFLSQDEFNQL 448
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV S G +KV + SE +Q++ PA+WKP PLWTGKQVI+A+LNHITR
Sbjct: 449 LYSSGVSTAGSTSFHGRPGQKVLWSRSEDEIQTLPPAIWKPEPLWTGKQVISAVLNHITR 508
Query: 2950 GCAPCTVKNQGKLPKDYFTD--STYK----------------------NEDEEDR-DQNA 2846
G P TV+ + K+P ++F YK NED++ + D+N
Sbjct: 509 GHPPFTVEKEAKIPTNFFNSRAKEYKPCDGKKSDEDKKQKSDVKEKRFNEDKQKKPDKNT 568
Query: 2845 EHK-------LLIWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIF 2687
K +LI++NELVRGVIDKAQFG++GLVHTV EL+GSN+AG+ LSALSRLFT +
Sbjct: 569 PQKKEPDEEIMLIYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGVLLSALSRLFTAY 628
Query: 2686 LQIHGFTCGVDDLIILPNYDEERKEKLEG-EDVGEEVHCNFVKFKRG--QIGPEELQLEI 2516
LQ+HGFTCGVDDL+I+ + D+ERK+ LE E GE VH NF+ K +I P ELQL I
Sbjct: 629 LQMHGFTCGVDDLLIMESIDDERKKLLESCERSGEAVHRNFIGIKDESIEIDPVELQLNI 688
Query: 2515 EKVICSNRESATASLDMKMKNKLTDK-GSQISKKLLTKGLLKPFPKNCISVMTTTGAKGS 2339
E+ I S+ +SA + LD +M N+L K S + KLL+ GLLKP KNCIS+MTT+GAKGS
Sbjct: 689 ERTIRSDGDSALSYLDRQMSNELNTKTSSGVINKLLSDGLLKPSGKNCISLMTTSGAKGS 748
Query: 2338 TVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYY 2159
VNFQQISS+LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGG+I DRFLTGLRPQEYY
Sbjct: 749 KVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYY 808
Query: 2158 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVD 1979
FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGS++QFYYGEDGVD
Sbjct: 809 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSVVQFYYGEDGVD 868
Query: 1978 VHRTSFLKNFKALADNQETICRKFQNKR-EFNTYIEKLPDGLEKEARHFIRE---ARKET 1811
VHRTSF+ F+ LA NQ+ I ++ N+ FN+Y+ +LP L ++A F+ + + T
Sbjct: 869 VHRTSFIAKFEQLAMNQDMIYKQCGNQLVTFNSYVSELPKALSEKAAKFLDDFSLMGRVT 928
Query: 1810 SEVQKPTEKEHLPKGRKAKRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVI 1631
S + K + L+KQK+L SLAQ GEPVGV+
Sbjct: 929 SNLVK-----------------------------HEDLYNLMKQKFLLSLAQPGEPVGVL 959
Query: 1630 AAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFK 1451
AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+ IKTPI+TCP + R K
Sbjct: 960 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAASNIKTPIITCPLQKGRTK 1019
Query: 1450 PDVMYLVSNVKKVSIADLAESMEVEL---SINDQQVARIYKLKMNLKATEF------VSL 1298
D L +KKVS+AD+ ESMEV + +I + RIYKLKM L VS+
Sbjct: 1020 EDAERLADKLKKVSVADIVESMEVSVLPFAIQGDGICRIYKLKMKLYRPVHYPQYADVSV 1079
Query: 1297 EDLHATLRSTFLRELEDAIENHVVFLSRV 1211
ED L F+R+LEDAI++H++ LSR+
Sbjct: 1080 EDWEEILEVDFVRDLEDAIQSHIILLSRI 1108
Score = 329 bits (844), Expect = 9e-87
Identities = 180/356 (50%), Positives = 230/356 (64%), Gaps = 15/356 (4%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEE-------- 1018
ER EDLG D QKRK Q+TDEMDY +S+ D +
Sbjct: 1180 ERAEDLGLDAQKRKVQATDEMDYDDGIEELNERESTASEESGFESEIDQGDNETETGKDA 1239
Query: 1017 -VDNRKDEE------TDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSD 859
+DN+ E + S D+A+ + ET S++KS + +T++ + S
Sbjct: 1240 MLDNKASETPLLRKASKSKSKDKATESPSQGETHSKAKSRNKKKQKAKRTHRP---KLSK 1296
Query: 858 KKPRRAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDAD 679
K+ RAI++ + +HFEVHFKFT EPH+LLA+IAQKTAKKVYI++ G+I C++
Sbjct: 1297 KEYDRAIFVEARDMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGRIERCRLTT--CK 1354
Query: 678 EKTVIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNID 499
E VI+ D K+ + + +N A++A+G+DF +FW+M D LD+ +YSNNI
Sbjct: 1355 ENQVIYYGDDPKKRVDISAKEKENVP----ALEATGLDFSTFWKMHDHLDIRYIYSNNIT 1410
Query: 498 AMLKTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAES 319
AML TYGVEAAR TIIRE+ VF YG+ + RHLSLIAD+MTH+GGYRPM R G IAES
Sbjct: 1411 AMLTTYGVEAARETIIREINHVFKSYGISVSTRHLSLIADFMTHSGGYRPMNRFGGIAES 1470
Query: 318 LSPFIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
+SPF KMSFETASKFIVEAA HG TDNLETPS+RICLGLPVKMGTG FDLMQKLE+
Sbjct: 1471 ISPFSKMSFETASKFIVEAALHGETDNLETPSARICLGLPVKMGTGAFDLMQKLEI 1526
>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
isoform 3 [Theobroma cacao]
Length = 1400
Score = 1096 bits (2834), Expect = 0.0
Identities = 573/912 (62%), Positives = 696/912 (76%), Gaps = 32/912 (3%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN VKLR
Sbjct: 142 EKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 201
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
AIING + HPGAT YVDK+ST +LP ++K RI+ISRKLPSSRG + Q GK +YEFEGK
Sbjct: 202 EAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGK 261
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDEINV
Sbjct: 262 IVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINV 321
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIVSAVLLT +DTFL+RDEFNQL
Sbjct: 322 HFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQL 381
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV ++ S G +KV SE M ++PA+ KP PLWTGKQVI+++L+HITR
Sbjct: 382 LYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR 441
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNED---EEDRDQN----------------AEHKLLI 2828
G P TV K+P+D+F + KN+ EE++ +N E K+LI
Sbjct: 442 GRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILI 501
Query: 2827 WKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDL 2648
++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI LS SRLFT+FLQ+HGFTCGVDDL
Sbjct: 502 YRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDL 561
Query: 2647 IILPNYDEERKEKLEG-EDVGEEVHCNFVKFK-RGQIGPEELQLEIEKVICSNRESATAS 2474
+I+ + D ERK++LE E E H K + P ELQLEIE+ I + E+A +
Sbjct: 562 LIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTA 621
Query: 2473 LDMKMKNKLTDKGSQ-ISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQ 2297
LD KM + L + S+ + +LL++GL+K +NCIS+MTT+GAKGS VNFQQISS+LGQQ
Sbjct: 622 LDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQ 681
Query: 2296 ELEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTA 2117
ELEGKRVPRMVSGKTLPCF PWD+ +RAGGFI+DRFL+GLRPQEYYFHCMAGREGLVDTA
Sbjct: 682 ELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTA 741
Query: 2116 VKTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALA 1937
VKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGSI+QF YGEDG+DVH+TSF+ F+ALA
Sbjct: 742 VKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALA 801
Query: 1936 DNQETICRKFQNK-REFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRK 1760
NQ+ + K ++ E + + LPDGL +A FIRE E++K ++ PK
Sbjct: 802 LNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE------EIKKYQHQKIKPK--- 852
Query: 1759 AKRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTF 1580
+FL L+K K+LSSLAQ GEPVGV+AAQS+GEPSTQMTLNTF
Sbjct: 853 -------------------DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTF 893
Query: 1579 HLAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIAD 1400
HLAGRGEMNVTLGIPRLQEILMTAS I+TP++TCP + + K D + L + +KK+++AD
Sbjct: 894 HLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVAD 953
Query: 1399 LAESMEVEL---SINDQQVARIYKLKMNL-KATEF-----VSLEDLHATLRSTFLRELED 1247
+ ESMEV + ++++ + IYKLKM L K ++ ++++D L+ FLRELED
Sbjct: 954 ILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELED 1013
Query: 1246 AIENHVVFLSRV 1211
AI+NH+V LS++
Sbjct: 1014 AIQNHLVLLSKI 1025
Score = 322 bits (825), Expect = 2e-84
Identities = 181/353 (51%), Positives = 226/353 (64%), Gaps = 11/353 (3%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEV------ 1015
+ER EDLG D QK+KQQ+TDEMDY +S+ D E+
Sbjct: 1069 EERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAAL---ESEIDMSEDETGTIQI 1125
Query: 1014 -----DNRKDEETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKP 850
DN KDE + S N E + RE K+ S+ R KK +F K+
Sbjct: 1126 NMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKR----------KKMKAKFVRKES 1175
Query: 849 RRAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKT 670
RAI+ A++GL FEVHFK EPH+LLAQIA+KTAKKVYI+S GKI C++ ++
Sbjct: 1176 DRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVF 1235
Query: 669 VIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAML 490
+D KK K + K+ A+ +GVDF +FW+M+D +D+ LYSN+I AML
Sbjct: 1236 YYGEDPKKRKSPSDKE--------KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAML 1287
Query: 489 KTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSP 310
TYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YRPM+R G IAES+SP
Sbjct: 1288 NTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISP 1347
Query: 309 FIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
F KMSFETASKFIVEAA HG+ DNLETPSSRICLGLPVKMGTG FDLMQK+E+
Sbjct: 1348 FSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1400
>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 1096 bits (2834), Expect = 0.0
Identities = 573/912 (62%), Positives = 696/912 (76%), Gaps = 32/912 (3%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN VKLR
Sbjct: 434 EKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 493
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
AIING + HPGAT YVDK+ST +LP ++K RI+ISRKLPSSRG + Q GK +YEFEGK
Sbjct: 494 EAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGK 553
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDEINV
Sbjct: 554 IVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINV 613
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIVSAVLLT +DTFL+RDEFNQL
Sbjct: 614 HFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQL 673
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV ++ S G +KV SE M ++PA+ KP PLWTGKQVI+++L+HITR
Sbjct: 674 LYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR 733
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNED---EEDRDQN----------------AEHKLLI 2828
G P TV K+P+D+F + KN+ EE++ +N E K+LI
Sbjct: 734 GRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILI 793
Query: 2827 WKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDL 2648
++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI LS SRLFT+FLQ+HGFTCGVDDL
Sbjct: 794 YRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDL 853
Query: 2647 IILPNYDEERKEKLEG-EDVGEEVHCNFVKFK-RGQIGPEELQLEIEKVICSNRESATAS 2474
+I+ + D ERK++LE E E H K + P ELQLEIE+ I + E+A +
Sbjct: 854 LIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTA 913
Query: 2473 LDMKMKNKLTDKGSQ-ISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQ 2297
LD KM + L + S+ + +LL++GL+K +NCIS+MTT+GAKGS VNFQQISS+LGQQ
Sbjct: 914 LDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQ 973
Query: 2296 ELEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTA 2117
ELEGKRVPRMVSGKTLPCF PWD+ +RAGGFI+DRFL+GLRPQEYYFHCMAGREGLVDTA
Sbjct: 974 ELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTA 1033
Query: 2116 VKTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALA 1937
VKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGSI+QF YGEDG+DVH+TSF+ F+ALA
Sbjct: 1034 VKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALA 1093
Query: 1936 DNQETICRKFQNK-REFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRK 1760
NQ+ + K ++ E + + LPDGL +A FIRE E++K ++ PK
Sbjct: 1094 LNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE------EIKKYQHQKIKPK--- 1144
Query: 1759 AKRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTF 1580
+FL L+K K+LSSLAQ GEPVGV+AAQS+GEPSTQMTLNTF
Sbjct: 1145 -------------------DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTF 1185
Query: 1579 HLAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIAD 1400
HLAGRGEMNVTLGIPRLQEILMTAS I+TP++TCP + + K D + L + +KK+++AD
Sbjct: 1186 HLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVAD 1245
Query: 1399 LAESMEVEL---SINDQQVARIYKLKMNL-KATEF-----VSLEDLHATLRSTFLRELED 1247
+ ESMEV + ++++ + IYKLKM L K ++ ++++D L+ FLRELED
Sbjct: 1246 ILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELED 1305
Query: 1246 AIENHVVFLSRV 1211
AI+NH+V LS++
Sbjct: 1306 AIQNHLVLLSKI 1317
Score = 300 bits (768), Expect = 6e-78
Identities = 160/288 (55%), Positives = 199/288 (69%)
Frame = -3
Query: 1014 DNRKDEETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKPRRAIY 835
DN KDE + S N E + RE K+ S+ R KK +F K+ RAI+
Sbjct: 1396 DNGKDEISQSSPNLENRSNPKSREEKTGSEPKR----------KKMKAKFVRKESDRAIF 1445
Query: 834 IAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKTVIWDD 655
A++GL FEVHFK EPH+LLAQIA+KTAKKVYI+S GKI C++ ++ +D
Sbjct: 1446 NAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGED 1505
Query: 654 DKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAMLKTYGV 475
KK K + K+ A+ +GVDF +FW+M+D +D+ LYSN+I AML TYGV
Sbjct: 1506 PKKRKSPSDKE--------KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGV 1557
Query: 474 EAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSPFIKMS 295
EAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YRPM+R G IAES+SPF KMS
Sbjct: 1558 EAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMS 1617
Query: 294 FETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
FETASKFIVEAA HG+ DNLETPSSRICLGLPVKMGTG FDLMQK+E+
Sbjct: 1618 FETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1665
>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
isoform 4 [Theobroma cacao]
Length = 1397
Score = 1091 bits (2821), Expect = 0.0
Identities = 572/911 (62%), Positives = 694/911 (76%), Gaps = 31/911 (3%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN VKLR
Sbjct: 142 EKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 201
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
AIING + HPGAT YVDK+ST +LP ++K RI+ISRKLPSSRG + Q GK +YEFEGK
Sbjct: 202 EAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGK 261
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDEINV
Sbjct: 262 IVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINV 321
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIVSAVLLT +DTFL+RDEFNQL
Sbjct: 322 HFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQL 381
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV ++ S G +KV SE M ++PA+ KP PLWTGKQVI+++L+HITR
Sbjct: 382 LYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR 441
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNED---EEDRDQN----------------AEHKLLI 2828
G P TV K+P+D+F + KN+ EE++ +N E K+LI
Sbjct: 442 GRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILI 501
Query: 2827 WKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDL 2648
++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI LS SRLFT+FLQ+HGFTCGVDDL
Sbjct: 502 YRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDL 561
Query: 2647 IILPNYDEERKEKLEG-EDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASL 2471
+I+ + D ERK++LE E E H K ELQLEIE+ I + E+A +L
Sbjct: 562 LIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTAL 619
Query: 2470 DMKMKNKLTDKGSQ-ISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQE 2294
D KM + L + S+ + +LL++GL+K +NCIS+MTT+GAKGS VNFQQISS+LGQQE
Sbjct: 620 DRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQE 679
Query: 2293 LEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAV 2114
LEGKRVPRMVSGKTLPCF PWD+ +RAGGFI+DRFL+GLRPQEYYFHCMAGREGLVDTAV
Sbjct: 680 LEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAV 739
Query: 2113 KTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALAD 1934
KTSRSGYLQRCLIKNLE LK+ YD+TVRDADGSI+QF YGEDG+DVH+TSF+ F+ALA
Sbjct: 740 KTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALAL 799
Query: 1933 NQETICRKFQNK-REFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKA 1757
NQ+ + K ++ E + + LPDGL +A FIRE E++K ++ PK
Sbjct: 800 NQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE------EIKKYQHQKIKPK---- 849
Query: 1756 KRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFH 1577
+FL L+K K+LSSLAQ GEPVGV+AAQS+GEPSTQMTLNTFH
Sbjct: 850 ------------------DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 891
Query: 1576 LAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADL 1397
LAGRGEMNVTLGIPRLQEILMTAS I+TP++TCP + + K D + L + +KK+++AD+
Sbjct: 892 LAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADI 951
Query: 1396 AESMEVEL---SINDQQVARIYKLKMNL-KATEF-----VSLEDLHATLRSTFLRELEDA 1244
ESMEV + ++++ + IYKLKM L K ++ ++++D L+ FLRELEDA
Sbjct: 952 LESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDA 1011
Query: 1243 IENHVVFLSRV 1211
I+NH+V LS++
Sbjct: 1012 IQNHLVLLSKI 1022
Score = 322 bits (825), Expect = 2e-84
Identities = 181/353 (51%), Positives = 226/353 (64%), Gaps = 11/353 (3%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEV------ 1015
+ER EDLG D QK+KQQ+TDEMDY +S+ D E+
Sbjct: 1066 EERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAAL---ESEIDMSEDETGTIQI 1122
Query: 1014 -----DNRKDEETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKP 850
DN KDE + S N E + RE K+ S+ R KK +F K+
Sbjct: 1123 NMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKR----------KKMKAKFVRKES 1172
Query: 849 RRAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKT 670
RAI+ A++GL FEVHFK EPH+LLAQIA+KTAKKVYI+S GKI C++ ++
Sbjct: 1173 DRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVF 1232
Query: 669 VIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAML 490
+D KK K + K+ A+ +GVDF +FW+M+D +D+ LYSN+I AML
Sbjct: 1233 YYGEDPKKRKSPSDKE--------KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAML 1284
Query: 489 KTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSP 310
TYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YRPM+R G IAES+SP
Sbjct: 1285 NTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISP 1344
Query: 309 FIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
F KMSFETASKFIVEAA HG+ DNLETPSSRICLGLPVKMGTG FDLMQK+E+
Sbjct: 1345 FSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1397
>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 1091 bits (2821), Expect = 0.0
Identities = 572/911 (62%), Positives = 694/911 (76%), Gaps = 31/911 (3%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPERVTPWN VKLR
Sbjct: 434 EKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 493
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
AIING + HPGAT YVDK+ST +LP ++K RI+ISRKLPSSRG + Q GK +YEFEGK
Sbjct: 494 EAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGK 553
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDEINV
Sbjct: 554 IVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINV 613
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIVSAVLLT +DTFL+RDEFNQL
Sbjct: 614 HFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQL 673
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV ++ S G +KV SE M ++PA+ KP PLWTGKQVI+++L+HITR
Sbjct: 674 LYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR 733
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNED---EEDRDQN----------------AEHKLLI 2828
G P TV K+P+D+F + KN+ EE++ +N E K+LI
Sbjct: 734 GRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILI 793
Query: 2827 WKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVDDL 2648
++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI LS SRLFT+FLQ+HGFTCGVDDL
Sbjct: 794 YRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDL 853
Query: 2647 IILPNYDEERKEKLEG-EDVGEEVHCNFVKFKRGQIGPEELQLEIEKVICSNRESATASL 2471
+I+ + D ERK++LE E E H K ELQLEIE+ I + E+A +L
Sbjct: 854 LIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTAL 911
Query: 2470 DMKMKNKLTDKGSQ-ISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYLGQQE 2294
D KM + L + S+ + +LL++GL+K +NCIS+MTT+GAKGS VNFQQISS+LGQQE
Sbjct: 912 DRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQE 971
Query: 2293 LEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAV 2114
LEGKRVPRMVSGKTLPCF PWD+ +RAGGFI+DRFL+GLRPQEYYFHCMAGREGLVDTAV
Sbjct: 972 LEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAV 1031
Query: 2113 KTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALAD 1934
KTSRSGYLQRCLIKNLE LK+ YD+TVRDADGSI+QF YGEDG+DVH+TSF+ F+ALA
Sbjct: 1032 KTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALAL 1091
Query: 1933 NQETICRKFQNK-REFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKGRKA 1757
NQ+ + K ++ E + + LPDGL +A FIRE E++K ++ PK
Sbjct: 1092 NQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE------EIKKYQHQKIKPK---- 1141
Query: 1756 KRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLNTFH 1577
+FL L+K K+LSSLAQ GEPVGV+AAQS+GEPSTQMTLNTFH
Sbjct: 1142 ------------------DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1183
Query: 1576 LAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSIADL 1397
LAGRGEMNVTLGIPRLQEILMTAS I+TP++TCP + + K D + L + +KK+++AD+
Sbjct: 1184 LAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADI 1243
Query: 1396 AESMEVEL---SINDQQVARIYKLKMNL-KATEF-----VSLEDLHATLRSTFLRELEDA 1244
ESMEV + ++++ + IYKLKM L K ++ ++++D L+ FLRELEDA
Sbjct: 1244 LESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDA 1303
Query: 1243 IENHVVFLSRV 1211
I+NH+V LS++
Sbjct: 1304 IQNHLVLLSKI 1314
Score = 322 bits (825), Expect = 2e-84
Identities = 181/353 (51%), Positives = 226/353 (64%), Gaps = 11/353 (3%)
Frame = -3
Query: 1176 DERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQDHLEEV------ 1015
+ER EDLG D QK+KQQ+TDEMDY +S+ D E+
Sbjct: 1358 EERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAAL---ESEIDMSEDETGTIQI 1414
Query: 1014 -----DNRKDEETDSDDNDEASNMQNDRETKSESKSSRAGAKSTAKTNKKSGEEFSDKKP 850
DN KDE + S N E + RE K+ S+ R KK +F K+
Sbjct: 1415 NMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKR----------KKMKAKFVRKES 1464
Query: 849 RRAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMVKYDADEKT 670
RAI+ A++GL FEVHFK EPH+LLAQIA+KTAKKVYI+S GKI C++ ++
Sbjct: 1465 DRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVF 1524
Query: 669 VIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLYSNNIDAML 490
+D KK K + K+ A+ +GVDF +FW+M+D +D+ LYSN+I AML
Sbjct: 1525 YYGEDPKKRKSPSDKE--------KIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAML 1576
Query: 489 KTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHGSIAESLSP 310
TYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YRPM+R G IAES+SP
Sbjct: 1577 NTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISP 1636
Query: 309 FIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLEV 151
F KMSFETASKFIVEAA HG+ DNLETPSSRICLGLPVKMGTG FDLMQK+E+
Sbjct: 1637 FSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1689
>ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Populus
euphratica]
Length = 1699
Score = 1084 bits (2804), Expect = 0.0
Identities = 569/914 (62%), Positives = 682/914 (74%), Gaps = 34/914 (3%)
Frame = -2
Query: 3850 EKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNSVKLR 3671
EKKEG+FRQKMMGKRVN+ACRSVISPDPYL VNEIGVPP FA++LTYPERVTPWN KLR
Sbjct: 420 EKKEGMFRQKMMGKRVNYACRSVISPDPYLDVNEIGVPPCFAVKLTYPERVTPWNVAKLR 479
Query: 3670 NAIINGPDIHPGATTYVDKVSTVKLPSNKKMRIAISRKLPSSRGVVTQSGKKNEYEFEGK 3491
NA+INGP+ HPGAT YVDK+ST KLP N+KMR++++RKL SG+ +YE+EGK
Sbjct: 480 NAVINGPESHPGATHYVDKLSTTKLPPNRKMRVSVARKL---------SGRSFDYEYEGK 530
Query: 3490 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINV 3311
IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NV
Sbjct: 531 IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 590
Query: 3310 HFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVSAVLLTMKDTFLTRDEFNQL 3131
HFPQDE+SRAE YNIVNAN QY+ P+ G+ +R LIQDHI+SAVLLT KDTFLT DE QL
Sbjct: 591 HFPQDEVSRAEGYNIVNANNQYVRPSNGEPIRSLIQDHIISAVLLTKKDTFLTEDEVYQL 650
Query: 3130 LYGSGVFAMMPGSHPGNNSRKVSFVDSEGVMQSVLPAVWKPGPLWTGKQVITALLNHITR 2951
LY SGV P S G RKV F+ E ++++ PA+ KP LW+GKQ+ITA+LNHITR
Sbjct: 651 LYSSGVSNARPTSFSGRAGRKVIFLSYEDEIETLDPAIRKPIYLWSGKQLITAVLNHITR 710
Query: 2950 GCAPCTVKNQGKLPKDYFTDSTYKNEDEEDRD---------------------QNAEHKL 2834
G P TV+ GKL D+F S KN + + Q + K+
Sbjct: 711 GHPPFTVEKGGKLSYDFFK-SKIKNGKSSNGEKVGVSKPMKEKESGKVNPKEKQLEDDKM 769
Query: 2833 LIWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIFLSALSRLFTIFLQIHGFTCGVD 2654
+I++N LV+GVIDKAQFG++GLVHTVQEL+G+ +AG LS SRLFT +LQ+HGFTCGVD
Sbjct: 770 IIFRNVLVQGVIDKAQFGEYGLVHTVQELFGAKAAGTLLSVFSRLFTAYLQMHGFTCGVD 829
Query: 2653 DLIILPNYDEERKEKLEG-EDVGEEVHCNFVKFKRG--QIGPEELQLEIEKVICSNRESA 2483
DL+I D+ERK++LE E GE++H F+ K +I P ELQ IEK I S+ ESA
Sbjct: 830 DLLITKIKDDERKKQLENCEKCGEQIHRKFIGIKDENIKIDPLELQSNIEKTIRSDGESA 889
Query: 2482 TASLDMKMKNKLTDKGSQ-ISKKLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISSYL 2306
LD +M N+L K S + +LL++GLLKP KNCIS+MTT+GAKGS VNFQQISS+L
Sbjct: 890 LTYLDRQMTNELNSKTSSGVINELLSEGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFL 949
Query: 2305 GQQELEGKRVPRMVSGKTLPCFSPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLV 2126
GQQELEGKRVPRMVSGKTLPCF PWD+ +RAGG+I DRFLTGLRPQEYYFHCMAGREGLV
Sbjct: 950 GQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYFHCMAGREGLV 1009
Query: 2125 DTAVKTSRSGYLQRCLIKNLESLKVGYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFK 1946
DTAVKTSRSGYLQRCLIKNLE L++GYD+TVRDADGSI+QFYYGEDGVDVH+T F+ F+
Sbjct: 1010 DTAVKTSRSGYLQRCLIKNLECLRIGYDHTVRDADGSIVQFYYGEDGVDVHQTGFIAKFE 1069
Query: 1945 ALADNQETICRKFQNKREFNTYIEKLPDGLEKEARHFIREARKETSEVQKPTEKEHLPKG 1766
ALA N+E I K FN YI +LP+ L+++A F+R KE S + T+
Sbjct: 1070 ALAANREIIYEKSDELGTFNAYISELPEALKEKAEIFLRNIAKEQSSLHDYTK------- 1122
Query: 1765 RKAKRKENQLEERKATEKEQNEFLELIKQKYLSSLAQSGEPVGVIAAQSIGEPSTQMTLN 1586
R N +E ++F +L+KQK+ SLAQ GEPVGV+AAQS+GEPSTQMTLN
Sbjct: 1123 ---DRSSNLVE---------HDFYKLLKQKFFLSLAQPGEPVGVLAAQSVGEPSTQMTLN 1170
Query: 1585 TFHLAGRGEMNVTLGIPRLQEILMTASDTIKTPILTCPFMQYRFKPDVMYLVSNVKKVSI 1406
TFHLAGRGEMNVTLGIPRLQEILMTAS IKTPI+TCP + R K D L +KKV++
Sbjct: 1171 TFHLAGRGEMNVTLGIPRLQEILMTASADIKTPIMTCPLQEGRTKEDAERLSDKLKKVTV 1230
Query: 1405 ADLAESMEVEL---SINDQQVARIYKLKMNLKATEF------VSLEDLHATLRSTFLREL 1253
AD+ ESMEV + ++ + + RIYKLKM L +S+E+ TL F+REL
Sbjct: 1231 ADIIESMEVSVMPFAVQNDGICRIYKLKMKLYTPAHYPQHADISVENWEETLEVLFVREL 1290
Query: 1252 EDAIENHVVFLSRV 1211
EDAI+NH+V LS++
Sbjct: 1291 EDAIQNHLVLLSKI 1304
Score = 311 bits (796), Expect = 3e-81
Identities = 177/361 (49%), Positives = 227/361 (62%), Gaps = 20/361 (5%)
Frame = -3
Query: 1173 ERGEDLGSDVQKRKQQSTDEMDYXXXXXXXXXXXXXXXXXEKGQSDQ-------DHLEEV 1015
E +DLG DVQKRKQQ TDEMDY + S D E+
Sbjct: 1345 EEADDLGLDVQKRKQQVTDEMDYDDGSEGLLNEDEGDLSGSQAPSGSESDTEPADKESEI 1404
Query: 1014 DNRKDEETDSDDNDEASNMQNDRETKSESKSSRAGAK----STAKTNKKSGEEFSDKKPR 847
N + DS+ ++ S++ N + KS K+S + ++ S K+ +K ++ KK R
Sbjct: 1405 SNTGMVDNDSEYFEKPSHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKVR 1464
Query: 846 ---------RAIYIAVKGLHFEVHFKFTMEPHLLLAQIAQKTAKKVYIKSSGKISHCKMV 694
R+I++ KGLHFE+H KFT EPH+LLA+IAQKTAKKV I++ GK+ C++
Sbjct: 1465 SKLVKKDFDRSIFVEAKGLHFEIHLKFTNEPHILLAEIAQKTAKKVCIQNPGKVQRCQVT 1524
Query: 693 KYDADEKTVIWDDDKKPKKSTVKDLQMDNEDLAYWAMKASGVDFKSFWEMQDDLDLSRLY 514
D E VI+ K PK+ D++ E A+ GVDF +FW+MQD LD+ +Y
Sbjct: 1525 --DCKENQVIYYG-KDPKRRI--DIE-PGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMY 1578
Query: 513 SNNIDAMLKTYGVEAARATIIREVKQVFDIYGVKIDYRHLSLIADYMTHAGGYRPMTRHG 334
SN+I MLK YGVEAAR TIIRE+K VF+ YG+ ++ RHLSLIADYMTH G YRPM+R G
Sbjct: 1579 SNSIHGMLKAYGVEAARETIIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIG 1638
Query: 333 SIAESLSPFIKMSFETASKFIVEAASHGMTDNLETPSSRICLGLPVKMGTGCFDLMQKLE 154
I+ES+SP KMSFETASKFIVEA H DNLE PS+R+CLGLPVKMGTG FDLMQKLE
Sbjct: 1639 GISESISPLSKMSFETASKFIVEATLHREVDNLEAPSARVCLGLPVKMGTGSFDLMQKLE 1698
Query: 153 V 151
+
Sbjct: 1699 I 1699