BLASTX nr result
ID: Forsythia22_contig00065225
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00065225
(221 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 93 6e-17
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 93 6e-17
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 93 6e-17
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 91 2e-16
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 87 3e-15
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 87 4e-15
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 86 1e-14
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 84 3e-14
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 84 3e-14
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 82 1e-13
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 81 3e-13
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 81 3e-13
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 80 5e-13
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 80 5e-13
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 80 7e-13
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 80 7e-13
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 78 2e-12
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 78 2e-12
gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thali... 78 2e-12
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 78 3e-12
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 93.2 bits (230), Expect = 6e-17
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DD+SRKVW++ L W T+V+ + GK VKTLRTDNGLEFCN +FDEFC++
Sbjct: 617 IDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRK 676
Query: 186 KGITRHRTVRNT 221
+GI RHRTVR+T
Sbjct: 677 EGIVRHRTVRHT 688
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 93.2 bits (230), Expect = 6e-17
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DD+SRKVW++ L W T+V+ + GK VKTLRTDNGLEFCN +FDEFC++
Sbjct: 472 IDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRK 531
Query: 186 KGITRHRTVRNT 221
+GI RHRTVR+T
Sbjct: 532 EGIVRHRTVRHT 543
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 93.2 bits (230), Expect = 6e-17
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DD+SRKVW++ L W T+V+ + GK VKTLRTDNGLEFCN +FDEFC++
Sbjct: 830 IDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRK 889
Query: 186 KGITRHRTVRNT 221
+GI RHRTVR+T
Sbjct: 890 EGIVRHRTVRHT 901
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 91.3 bits (225), Expect = 2e-16
Identities = 40/73 (54%), Positives = 50/73 (68%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DDYSR W++ + W L++NQ GK +K LRTDNGLEFC EFD+FCK
Sbjct: 495 IIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCK 554
Query: 183 EKGITRHRTVRNT 221
++GI RHRTVRNT
Sbjct: 555 DEGIARHRTVRNT 567
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttatus]
Length = 598
Score = 87.4 bits (215), Expect = 3e-15
Identities = 39/73 (53%), Positives = 49/73 (67%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DDYSRKV++F L W TL++NQ GK +KTLRTDNG+EFCN EFD C
Sbjct: 231 IIDDYSRKVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCA 290
Query: 183 EKGITRHRTVRNT 221
GI RH++V +T
Sbjct: 291 NSGIRRHKSVVHT 303
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 87.0 bits (214), Expect = 4e-15
Identities = 41/73 (56%), Positives = 47/73 (64%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD SRKVW+ L W LV+NQ+ K VK LRTDNGLEFCN +FDEFCK
Sbjct: 513 IIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCK 572
Query: 183 EKGITRHRTVRNT 221
+ GI RHRT T
Sbjct: 573 QNGIERHRTCTYT 585
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 85.5 bits (210), Expect = 1e-14
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DDY+RKVW++ L W +LV+NQ G+ VKTLRTDNGLEFCN FD FC+E
Sbjct: 531 IDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEE 590
Query: 186 KGITRHRTVRNT 221
KG RHRT T
Sbjct: 591 KGFQRHRTCAYT 602
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 84.3 bits (207), Expect = 3e-14
Identities = 39/73 (53%), Positives = 47/73 (64%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD +RKVW++ L W +LV+NQ+ K VK LRTDNGLEFCN FD +CK
Sbjct: 522 IIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCK 581
Query: 183 EKGITRHRTVRNT 221
E GI RHRT T
Sbjct: 582 EHGIERHRTCTYT 594
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 84.3 bits (207), Expect = 3e-14
Identities = 38/73 (52%), Positives = 47/73 (64%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD +RKVW+ L W LV+NQ+ K +K LRTDNGLEFCN +FDE+CK
Sbjct: 499 IIDDKTRKVWLMFLKTKDETFDKFCEWKELVENQVNKKIKVLRTDNGLEFCNLKFDEYCK 558
Query: 183 EKGITRHRTVRNT 221
+ GI RHRT T
Sbjct: 559 KNGIERHRTCTYT 571
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 82.0 bits (201), Expect = 1e-13
Identities = 38/72 (52%), Positives = 47/72 (65%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
VDDYSRKVWI+ L W +V+NQ + VK LRTDNGLE+CN F++FCKE
Sbjct: 500 VDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKE 559
Query: 186 KGITRHRTVRNT 221
+GI RH+T T
Sbjct: 560 EGIVRHKTCAYT 571
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 80.9 bits (198), Expect = 3e-13
Identities = 38/73 (52%), Positives = 46/73 (63%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD +RKVW++ L W LV+NQ K VK LRTDNGLEFCN +FD +CK
Sbjct: 532 IIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLEFCNLKFDAYCK 591
Query: 183 EKGITRHRTVRNT 221
E GI RH+T T
Sbjct: 592 EHGIERHKTCTYT 604
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 80.9 bits (198), Expect = 3e-13
Identities = 38/73 (52%), Positives = 46/73 (63%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD SRKVW++ L W LV+NQ K VK LRTDNGLEFCN +FD +CK
Sbjct: 205 IIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQTDKRVKCLRTDNGLEFCNIKFDSYCK 264
Query: 183 EKGITRHRTVRNT 221
+ GI RH+T T
Sbjct: 265 KYGIERHKTCTYT 277
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 80.1 bits (196), Expect = 5e-13
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD SRKVW+ L W +V+N +GK VKTLRTDNGLEFCN F+++C
Sbjct: 427 IIDDKSRKVWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDYCA 486
Query: 183 EKGITRHRTVRNT 221
+ GI RHRT T
Sbjct: 487 KTGIERHRTCTYT 499
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 80.1 bits (196), Expect = 5e-13
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+D YSRK W++ L W +V+NQ G+ +K LR DNGLEFCN +F++FCKE
Sbjct: 508 IDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQTGRKIKILRIDNGLEFCNQQFNDFCKE 567
Query: 186 KGITRHRTVRNT 221
KGI RH+T T
Sbjct: 568 KGIVRHQTCAYT 579
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 79.7 bits (195), Expect = 7e-13
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
++DDYSRKVWI+ L W +LV+NQ +K LRTDNGLEFC+ F+E+C+
Sbjct: 507 LIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQ 566
Query: 183 EKGITRHRTVRNT 221
+ GI RH+TVR T
Sbjct: 567 KHGIKRHKTVRFT 579
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 79.7 bits (195), Expect = 7e-13
Identities = 39/72 (54%), Positives = 45/72 (62%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DDY+RKV I+ L W LV+NQ K +KTLRTDNGLEFCN FDEFC +
Sbjct: 502 IDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQ 561
Query: 186 KGITRHRTVRNT 221
KGI HRT T
Sbjct: 562 KGILWHRTCAYT 573
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 78.2 bits (191), Expect = 2e-12
Identities = 38/73 (52%), Positives = 46/73 (63%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
IVDDYSRKVW + L W T+V+ QI + VK LRTDNG+EFC+ F +CK
Sbjct: 435 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQIERKVKILRTDNGMEFCSKIFKSYCK 494
Query: 183 EKGITRHRTVRNT 221
KGI RH TV +T
Sbjct: 495 SKGIVRHYTVPHT 507
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 78.2 bits (191), Expect = 2e-12
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = +3
Query: 3 IVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCK 182
I+DD++RKVW++ + W LV+NQ + VKTLRTDNGLEFCN FD FC+
Sbjct: 523 IIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCE 582
Query: 183 EKGITRHRTVRNT 221
GI RHRT T
Sbjct: 583 SIGIHRHRTCAYT 595
>gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thaliana]
gi|7267195|emb|CAB77906.1| putative polyprotein
[Arabidopsis thaliana]
Length = 778
Score = 78.2 bits (191), Expect = 2e-12
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DD++RKV ++ L W +LV+NQ G VKTLRTDNGLEFCN FD FC+E
Sbjct: 414 IDDHTRKVCVYFLKTKDEAFEKFVSWISLVENQSGNRVKTLRTDNGLEFCNRMFDGFCEE 473
Query: 186 KGITRHRT 209
+GI RHRT
Sbjct: 474 RGIQRHRT 481
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 77.8 bits (190), Expect = 3e-12
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = +3
Query: 6 VDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQIGKGVKTLRTDNGLEFCNFEFDEFCKE 185
+DD+S+KVW++ L W V+NQ GK +K LRTDNGLEF N +FD CKE
Sbjct: 407 IDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEFYNTQFDNLCKE 466
Query: 186 KGITRHRTVRNT 221
GI RHRT T
Sbjct: 467 DGIKRHRTCTYT 478