BLASTX nr result
ID: Forsythia22_contig00051837
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00051837
(319 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [H... 109 8e-22
ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast)... 109 8e-22
ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea s... 109 8e-22
ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana s... 109 8e-22
emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp... 109 8e-22
ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea s... 109 8e-22
gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea] gi|3... 109 8e-22
gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datu... 107 4e-21
ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) ... 107 4e-21
sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymeras... 106 5e-21
ref|YP_009142316.1| RNA polymerase beta' subunit (chloroplast) [... 106 7e-21
ref|YP_009139458.1| RNA polymerase beta' subunit (chloroplast) [... 106 7e-21
gb|AJW75040.1| RNA polymerase beta' subunit (chloroplast) [Vasso... 106 7e-21
gb|AJS14328.1| RNA polymerase beta' subunit (chloroplast) [Iochr... 106 7e-21
gb|AJR30369.1| RNA polymerase beta' subunit (chloroplast) [Vasso... 106 7e-21
ref|YP_009123515.1| RNA polymerase beta' subunit (plastid) [Phys... 106 7e-21
ref|YP_009128171.1| RNA polymerase beta' subunit (chloroplast) [... 106 7e-21
ref|YP_009040308.1| RNA polymerase beta' subunit [Hyoscyamus nig... 106 7e-21
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 106 7e-21
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 106 7e-21
>ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [Hesperelaea palmeri]
gi|725798276|emb|CED79752.1| RNA polymerase beta'' chain
(chloroplast) [Hesperelaea palmeri]
Length = 1394
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 855 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 914
>ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
gi|363413081|gb|ADA69916.2| RNA polymerase beta II
subunit (chloroplast) [Olea europaea]
Length = 1390
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 851 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 910
>ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
gi|334084940|emb|CBJ04288.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
Length = 1394
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 855 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 914
>ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana subsp. woodiana]
gi|334084649|emb|CBS29340.1| RNA polymerase beta'' chain
[Olea woodiana subsp. woodiana]
Length = 1394
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 855 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 914
>emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
Length = 1394
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 855 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 914
>ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
gi|334701878|ref|YP_004564487.1| RNA polymerase beta''
chain [Olea europaea subsp. maroccana]
gi|328795423|emb|CBR30304.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|334084391|emb|CBR23819.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
gi|334084854|emb|CBS29226.1| RNA polymerase beta'' chain
[Olea europaea subsp. maroccana]
gi|334085026|emb|CBR23728.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
Length = 1394
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 855 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 914
>gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea]
gi|334084477|emb|CBR24610.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|510934394|emb|CCQ09092.1| RNA polymerase beta'' chain
(chloroplast) [Olea europaea subsp. europaea]
Length = 1394
Score = 109 bits (272), Expect = 8e-22
Identities = 56/60 (93%), Positives = 56/60 (93%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFS 174
SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 855 SEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSS 914
>gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
Length = 1388
Score = 107 bits (266), Expect = 4e-21
Identities = 55/65 (84%), Positives = 58/65 (89%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTN+NPF
Sbjct: 849 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNLNPF--S 906
Query: 178 SCYYF 192
S YY+
Sbjct: 907 SIYYY 911
>ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
gi|350996503|gb|AEQ37014.1| RNA polymerase beta subunit-2
[Datura stramonium]
Length = 1388
Score = 107 bits (266), Expect = 4e-21
Identities = 55/65 (84%), Positives = 58/65 (89%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTN+NPF
Sbjct: 849 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNLNPF--S 906
Query: 178 SCYYF 192
S YY+
Sbjct: 907 SIYYY 911
>sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|82754619|gb|ABB90033.1| RNA polymerase beta II chain
[Solanum tuberosum]
Length = 1392
Score = 106 bits (265), Expect = 5e-21
Identities = 58/84 (69%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF +
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSA- 911
Query: 178 SCYYF*IFDFPLFKSYREACKAQG 249
I+ +P K + + QG
Sbjct: 912 ------IYSYPKAKIQQSLNQPQG 929
>ref|YP_009142316.1| RNA polymerase beta' subunit (chloroplast) [Iochroma tingoanum]
gi|820957804|gb|AKH02309.1| RNA polymerase beta' subunit
(chloroplast) [Iochroma tingoanum]
Length = 1384
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>ref|YP_009139458.1| RNA polymerase beta' subunit (chloroplast) [Dunalia solanacea]
gi|817597842|gb|AKF78402.1| RNA polymerase beta' subunit
(chloroplast) [Dunalia solanacea]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>gb|AJW75040.1| RNA polymerase beta' subunit (chloroplast) [Vassobia dichotoma]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>gb|AJS14328.1| RNA polymerase beta' subunit (chloroplast) [Iochroma calycinum]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>gb|AJR30369.1| RNA polymerase beta' subunit (chloroplast) [Vassobia breviflora]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>ref|YP_009123515.1| RNA polymerase beta' subunit (plastid) [Physalis peruviana]
gi|757173481|gb|AJN90296.1| RNA polymerase beta' subunit
[Physalis peruviana]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>ref|YP_009128171.1| RNA polymerase beta' subunit (chloroplast) [Saracha punctata]
gi|788512369|ref|YP_009123147.1| RNA polymerase beta'
subunit (chloroplast) [Dunalia obovata]
gi|803360228|ref|YP_009123341.1| RNA polymerase beta'
subunit (chloroplast) [Iochroma nitidum]
gi|813559791|ref|YP_009132742.1| RNA polymerase beta'
subunit (chloroplast) [Dunalia brachyacantha]
gi|756419260|gb|AJL34399.1| RNA polymerase beta' subunit
(chloroplast) [Dunalia obovata]
gi|756761978|gb|AJM70090.1| RNA polymerase beta' subunit
(chloroplast) [Iochroma nitidum]
gi|758185496|gb|AJO61571.1| RNA polymerase beta' subunit
(chloroplast) [Saracha punctata]
gi|800876042|gb|AKA66522.1| RNA polymerase beta' subunit
(chloroplast) [Dunalia brachyacantha]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>ref|YP_009040308.1| RNA polymerase beta' subunit [Hyoscyamus niger]
gi|537366275|gb|AGU46456.1| RNA polymerase beta' subunit
[Hyoscyamus niger]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
(chloroplast) [Nicotiana sylvestris]
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
(chloroplast) [Nicotiana tabacum]
gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit
[Nicotiana tabacum] gi|77799548|dbj|BAE46637.1| RNA
polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
(chloroplast) [Nicotiana tomentosiformis]
gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit
[Nicotiana tomentosiformis]
Length = 1392
Score = 106 bits (264), Expect = 7e-21
Identities = 55/63 (87%), Positives = 56/63 (88%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 EEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSSSGLLSDN--DCTNINPFFSD 177
EEARASFVEIRTNGLIRHFLRI+LVKSPISYIGKRNDPS SGLLSDN DCTNINPF S
Sbjct: 853 EEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSI 912
Query: 178 SCY 186
Y
Sbjct: 913 YSY 915