BLASTX nr result
ID: Forsythia22_contig00044374
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00044374
(286 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 131 2e-28
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 128 2e-27
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 128 2e-27
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 128 2e-27
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 127 2e-27
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 125 1e-26
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 123 5e-26
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 122 9e-26
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 120 3e-25
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 120 4e-25
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 120 4e-25
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 119 6e-25
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 119 8e-25
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 118 2e-24
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 117 3e-24
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 117 4e-24
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 116 5e-24
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 115 9e-24
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 115 9e-24
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 115 1e-23
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttatus]
Length = 598
Score = 131 bits (330), Expect = 2e-28
Identities = 61/94 (64%), Positives = 74/94 (78%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
P+SV T G R++L IIDD+SRK++ FLLK KSD F FKTWKTLIENQT K+IK LRTD
Sbjct: 216 PTSVPTYGGNRYFLSIIDDYSRKVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTD 275
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NG+EFCN +FD C + GI RH++V +T QQNGV
Sbjct: 276 NGIEFCNLEFDNLCANSGIRRHKSVVHTPQQNGV 309
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 128 bits (321), Expect = 2e-27
Identities = 57/94 (60%), Positives = 71/94 (75%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS V + SG R+Y+ IDDFSRK+W + LK+K + F FK WKT++E +T K +K LRTD
Sbjct: 601 PSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTD 660
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN DFD FC+ GI+RHRTV +T QQNGV
Sbjct: 661 NGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGV 694
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 128 bits (321), Expect = 2e-27
Identities = 57/94 (60%), Positives = 71/94 (75%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS V + SG R+Y+ IDDFSRK+W + LK+K + F FK WKT++E +T K +K LRTD
Sbjct: 456 PSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTD 515
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN DFD FC+ GI+RHRTV +T QQNGV
Sbjct: 516 NGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGV 549
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 128 bits (321), Expect = 2e-27
Identities = 57/94 (60%), Positives = 71/94 (75%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS V + SG R+Y+ IDDFSRK+W + LK+K + F FK WKT++E +T K +K LRTD
Sbjct: 814 PSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTD 873
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN DFD FC+ GI+RHRTV +T QQNGV
Sbjct: 874 NGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGV 907
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 127 bits (320), Expect = 2e-27
Identities = 60/94 (63%), Positives = 70/94 (74%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
P V +L G RF++ IIDD+SR W +++K KS+ FQ FK WK L+ENQT KKIK LRTD
Sbjct: 480 PCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTD 539
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFC +FD FCKD GI RHRTV T QQNGV
Sbjct: 540 NGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGV 573
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 125 bits (313), Expect = 1e-26
Identities = 56/94 (59%), Positives = 72/94 (76%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
P+ ++SG +++L IIDD +RK+W + LKSK +TF F WK+L+ENQ +KK+K LRTD
Sbjct: 507 PNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTD 566
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN FD +CK+ GI RHRT TYT QQNGV
Sbjct: 567 NGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGV 600
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 123 bits (308), Expect = 5e-26
Identities = 55/94 (58%), Positives = 73/94 (77%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS V ++ G R++L +IDD+SRK+W + LK+KS+TF FK WK L+E QTS+K+K LRTD
Sbjct: 460 PSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTD 519
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEF ++DF+ C+ GI RHRTV YT QQNG+
Sbjct: 520 NGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGL 553
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 122 bits (306), Expect = 9e-26
Identities = 58/94 (61%), Positives = 70/94 (74%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
P+ +LSG +++L IIDD +RK+W LK+K +TF F WK L+ENQ +KKIKVLRTD
Sbjct: 484 PNVTPSLSGKQYFLSIIDDKTRKVWLMFLKTKDETFDKFCEWKELVENQVNKKIKVLRTD 543
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN FD +CK GI RHRT TYT QQNGV
Sbjct: 544 NGLEFCNLKFDEYCKKNGIERHRTCTYTPQQNGV 577
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 120 bits (302), Expect = 3e-25
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = -3
Query: 269 TLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTDNGLEF 90
++SG +++L IIDD SRK+W + L+SK +TF F WK L+ENQT K++K LRTDNGLEF
Sbjct: 195 SMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQTDKRVKCLRTDNGLEF 254
Query: 89 CNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
CN FD +CK GI RH+T TYT QQNGV
Sbjct: 255 CNIKFDSYCKKYGIERHKTCTYTPQQNGV 283
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 120 bits (301), Expect = 4e-25
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = -3
Query: 269 TLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTDNGLEF 90
+LSG +++L IIDD +RK+W + L+SK +TF F WK L+ENQ +KK+K LRTDNGLEF
Sbjct: 522 SLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLEF 581
Query: 89 CNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
CN FD +CK+ GI RH+T TYT QQNGV
Sbjct: 582 CNLKFDAYCKEHGIERHKTCTYTPQQNGV 610
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 120 bits (301), Expect = 4e-25
Identities = 56/88 (63%), Positives = 67/88 (76%)
Frame = -3
Query: 266 LSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTDNGLEFC 87
L G +++L IIDD SRK+W LK+K +TF+ F WK L+ENQ +KK+K+LRTDNGLEFC
Sbjct: 504 LWGKQYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFC 563
Query: 86 NDDFDLFCKDCGILRHRTVTYTHQQNGV 3
N FD FCK GI RHRT TYT QQNGV
Sbjct: 564 NLKFDEFCKQNGIERHRTCTYTPQQNGV 591
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 119 bits (299), Expect = 6e-25
Identities = 55/94 (58%), Positives = 68/94 (72%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS +L G R+ L IIDD+SRK+W + LK K DTF FK WK +IE QT K++KVLRTD
Sbjct: 495 PSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTD 554
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
N EFC+D FD +C+ GI+RH T+ YT QQNGV
Sbjct: 555 NAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGV 588
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 119 bits (298), Expect = 8e-25
Identities = 56/94 (59%), Positives = 67/94 (71%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS L G R+ L IIDD+SRK+W + LK K DTF FK WK IE QT K++KVLRTD
Sbjct: 495 PSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTD 554
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NG EFC+D FD +C+ GI+RH T+ YT QQNGV
Sbjct: 555 NGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGV 588
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103833265 [Brassica rapa]
Length = 3353
Score = 118 bits (295), Expect = 2e-24
Identities = 51/94 (54%), Positives = 67/94 (71%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS+ +L G ++++ IDDFS+K+W + L++K + F FK WK +E+ T KKIK LRTD
Sbjct: 421 PSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKKIKCLRTD 480
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN+ FD C+ GI RHRT YT QQNGV
Sbjct: 481 NGLEFCNNRFDELCRTSGIKRHRTCNYTPQQNGV 514
Score = 118 bits (295), Expect = 2e-24
Identities = 51/94 (54%), Positives = 67/94 (71%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS+ +L G ++++ IDDFS+K+W + L++K + F FK WK +E+ T KKIK LRTD
Sbjct: 2496 PSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKKIKCLRTD 2555
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN+ FD C+ GI RHRT YT QQNGV
Sbjct: 2556 NGLEFCNNRFDELCRTSGIKRHRTCNYTPQQNGV 2589
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 117 bits (293), Expect = 3e-24
Identities = 52/89 (58%), Positives = 65/89 (73%)
Frame = -3
Query: 269 TLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTDNGLEF 90
+L G R+++ IDDFS+K+W + LK+K + + F+ WK +ENQT KKIK LRTDNGLEF
Sbjct: 396 SLGGCRYFVSFIDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEF 455
Query: 89 CNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
N FD CK+ GI RHRT TYT QQNGV
Sbjct: 456 YNTQFDNLCKEDGIKRHRTCTYTPQQNGV 484
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 117 bits (292), Expect = 4e-24
Identities = 54/94 (57%), Positives = 68/94 (72%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS +L G + L IIDD+SRK+W + LK K DTF FK WK +IE QT K++KVLRTD
Sbjct: 435 PSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTD 494
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
+G EFC+D FD +C+ GI+RH T+ YT QQNGV
Sbjct: 495 SGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGV 528
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 116 bits (291), Expect = 5e-24
Identities = 53/94 (56%), Positives = 67/94 (71%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
P+ ++SG +++L IIDD SRK+W LKSK +TF F WK ++EN KK+K LRTD
Sbjct: 412 PNVTPSISGKQYFLSIIDDKSRKVWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTD 471
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NGLEFCN+ F+ +C GI RHRT TYT QQNGV
Sbjct: 472 NGLEFCNNRFNDYCAKTGIERHRTCTYTPQQNGV 505
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 115 bits (289), Expect = 9e-24
Identities = 52/94 (55%), Positives = 68/94 (72%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS +L G R+ L IIDD+SRK+W + LK K DTF FK WK +IE QT +K+K+LRTD
Sbjct: 494 PSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTD 553
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NG EFC+ F+ +C+ GI+RH T+ +T QQNGV
Sbjct: 554 NGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 587
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 115 bits (289), Expect = 9e-24
Identities = 52/94 (55%), Positives = 68/94 (72%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS +L G R+ L IIDD+SRK+W + LK K DTF FK WK +IE QT +K+K+LRTD
Sbjct: 494 PSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTD 553
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NG EFC+ F+ +C+ GI+RH T+ +T QQNGV
Sbjct: 554 NGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 587
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 115 bits (288), Expect = 1e-23
Identities = 51/94 (54%), Positives = 68/94 (72%)
Frame = -3
Query: 284 PSSVNTLSGYRFYLLIIDDFSRKLWTFLLKSKSDTFQNFKTWKTLIENQTSKKIKVLRTD 105
PS +L G R+ L +IDD+SRK+W + LK K DTF FK WK +IE QT +K+K+LRTD
Sbjct: 494 PSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTD 553
Query: 104 NGLEFCNDDFDLFCKDCGILRHRTVTYTHQQNGV 3
NG EFC+ F+ +C+ GI+RH T+ +T QQNGV
Sbjct: 554 NGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 587