BLASTX nr result
ID: Forsythia22_contig00030768
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00030768
(384 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot escule... 60 2e-10
ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus co... 60 2e-10
gb|AIS35674.1| RNA polymerase beta (chloroplast) [Mesembryanthem... 63 3e-10
gb|AJS14410.1| RNA polymerase beta [Ruellia breedlovei] 60 3e-10
ref|YP_009111655.1| RNA polymerase beta (chloroplast) [Apios ame... 60 3e-10
ref|YP_009114440.1| RNA polymerase beta (chloroplast) [Paeonia o... 60 3e-10
ref|YP_009127185.1| RNA polymerase beta (chloroplast) [Libidibia... 62 3e-10
ref|YP_009115406.1| RpoC1; RNA polymerase beta' subunit (chlorop... 62 3e-10
gb|AHE41652.1| RNA polymerase beta' subunit protein, partial (ch... 60 3e-10
gb|AIZ57524.1| RNA polymerase beta subunit (chloroplast) [Clemat... 62 4e-10
ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasilie... 59 4e-10
gb|AFB76999.1| DNA-directed RNA polymerase beta' chain, partial ... 58 4e-10
gb|ADD31165.1| RNA polymerase beta' subunit protein (chloroplast... 59 7e-10
ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus ... 60 7e-10
gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus] 60 7e-10
emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus] 60 7e-10
ref|YP_007890364.1| RNA polymerase beta' subunit (chloroplast) [... 59 7e-10
ref|YP_009004035.1| RNA polymerase beta [Cucumis hystrix] gi|586... 60 7e-10
gb|AHM89975.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 60 7e-10
gb|AHM88970.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 60 7e-10
>ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot esculenta]
gi|212288297|sp|B1NWE1.1|RPOC1_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
(chloroplast) [Manihot esculenta]
gi|157695876|gb|ABV66145.1| RNA polymerase beta [Manihot
esculenta]
Length = 680
Score = 60.5 bits (145), Expect(2) = 2e-10
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ Q FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 EKEDQKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VIR+EKED KF
Sbjct: 71 CGNYRVIRNEKEDQKF 86
>ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus communis]
gi|339516156|gb|AEJ82546.1| RNA polymerase beta subunit
[Ricinus communis]
Length = 654
Score = 60.5 bits (145), Expect(2) = 2e-10
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ Q FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 EKEDQKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VIR+EKED KF
Sbjct: 71 CGNYRVIRNEKEDQKF 86
>gb|AIS35674.1| RNA polymerase beta (chloroplast) [Mesembryanthemum crystallinum]
Length = 683
Score = 62.8 bits (151), Expect(2) = 3e-10
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ QNFCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 EKEDQNFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 28.5 bits (62), Expect(2) = 3e-10
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKED F
Sbjct: 71 CGNYRVIGDEKEDQNF 86
>gb|AJS14410.1| RNA polymerase beta [Ruellia breedlovei]
Length = 687
Score = 60.5 bits (145), Expect(2) = 3e-10
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ Q FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 EKEDQKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 30.4 bits (67), Expect(2) = 3e-10
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKED KF
Sbjct: 71 CGNYRVIGDEKEDQKF 86
>ref|YP_009111655.1| RNA polymerase beta (chloroplast) [Apios americana]
Length = 684
Score = 60.5 bits (145), Expect(2) = 3e-10
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK Q FCEQCGVEF+D R+RRYQMGYIKL C
Sbjct: 80 KKDDQKFCEQCGVEFIDSRVRRYQMGYIKLAC 111
Score = 30.4 bits (67), Expect(2) = 3e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VIRD+K+D KF
Sbjct: 71 CGNYRVIRDKKDDQKF 86
>ref|YP_009114440.1| RNA polymerase beta (chloroplast) [Paeonia obovata]
gi|573015331|gb|AHF71911.1| DNA-directed RNA polymerase
beta' chain (chloroplast) [Paeonia sp. Sd0052]
gi|604723699|gb|AHV83415.1| RNA polymerase beta
(chloroplast) [Paeonia obovata]
Length = 683
Score = 59.7 bits (143), Expect(2) = 3e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVCS 256
+K+ FCEQCGVEFVD R+RRYQMGYIKL CS
Sbjct: 80 EKEDSKFCEQCGVEFVDSRVRRYQMGYIKLACS 112
Score = 31.2 bits (69), Expect(2) = 3e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKED+KF
Sbjct: 71 CGNYRVIGDEKEDSKF 86
>ref|YP_009127185.1| RNA polymerase beta (chloroplast) [Libidibia coriaria]
Length = 682
Score = 62.0 bits (149), Expect(2) = 3e-10
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ Q FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 KKEDQKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 28.9 bits (63), Expect(2) = 3e-10
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED KF
Sbjct: 71 CGNYRVIGDKKEDQKF 86
>ref|YP_009115406.1| RpoC1; RNA polymerase beta' subunit (chloroplast) [Acacia ligulata]
gi|743403977|emb|CED95152.1| RpoC1; RNA polymerase beta'
subunit (chloroplast) [Acacia ligulata]
Length = 682
Score = 62.0 bits (149), Expect(2) = 3e-10
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ Q FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 KKEDQKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 28.9 bits (63), Expect(2) = 3e-10
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED KF
Sbjct: 71 CGNYRVIGDKKEDQKF 86
>gb|AHE41652.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Paeonia obovata]
Length = 639
Score = 59.7 bits (143), Expect(2) = 3e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVCS 256
+K+ FCEQCGVEFVD R+RRYQMGYIKL CS
Sbjct: 59 EKEDSKFCEQCGVEFVDSRVRRYQMGYIKLACS 91
Score = 31.2 bits (69), Expect(2) = 3e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKED+KF
Sbjct: 50 CGNYRVIGDEKEDSKF 65
>gb|AIZ57524.1| RNA polymerase beta subunit (chloroplast) [Clematis fusca var.
coreana]
Length = 680
Score = 61.6 bits (148), Expect(2) = 4e-10
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+KK Q FCEQCGVEFVD R+RRYQMGYIKL C
Sbjct: 80 EKKDQKFCEQCGVEFVDSRVRRYQMGYIKLAC 111
Score = 28.9 bits (63), Expect(2) = 4e-10
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEK+D KF
Sbjct: 71 CGNYRVIGDEKKDQKF 86
>ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasiliensis]
gi|308523495|gb|ADO33545.1| RNA polymerase beta' subunit
[Hevea brasiliensis]
Length = 680
Score = 59.3 bits (142), Expect(2) = 4e-10
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ Q FCEQCGVEF+D RIRRYQMGYIKL C
Sbjct: 80 EKEDQKFCEQCGVEFMDSRIRRYQMGYIKLAC 111
Score = 31.2 bits (69), Expect(2) = 4e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VIR+EKED KF
Sbjct: 71 CGNYRVIRNEKEDQKF 86
>gb|AFB76999.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Anredera baselloides]
Length = 668
Score = 57.8 bits (138), Expect(2) = 4e-10
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ FCEQCGVEFVD R+RRYQMGYIKL C
Sbjct: 80 EKEDTKFCEQCGVEFVDSRVRRYQMGYIKLAC 111
Score = 32.7 bits (73), Expect(2) = 4e-10
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKEDTKF
Sbjct: 71 CGNYRVIGDEKEDTKF 86
>gb|ADD31165.1| RNA polymerase beta' subunit protein (chloroplast) [Ilex cornuta]
Length = 694
Score = 58.5 bits (140), Expect(2) = 7e-10
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 87 EKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 118
Score = 31.2 bits (69), Expect(2) = 7e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKED+KF
Sbjct: 78 CGNYRVIGDEKEDSKF 93
>ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus laevigata]
gi|309252881|gb|ADO60301.1| RNA polymerase beta I
subunit [Corynocarpus laevigata]
Length = 689
Score = 60.1 bits (144), Expect(2) = 7e-10
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 87 KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 118
Score = 29.6 bits (65), Expect(2) = 7e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED+KF
Sbjct: 78 CGNYRVIGDKKEDSKF 93
>gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus]
Length = 687
Score = 60.1 bits (144), Expect(2) = 7e-10
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 87 KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 118
Score = 29.6 bits (65), Expect(2) = 7e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED+KF
Sbjct: 78 CGNYRVIGDKKEDSKF 93
>emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus]
Length = 687
Score = 60.1 bits (144), Expect(2) = 7e-10
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 87 KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 118
Score = 29.6 bits (65), Expect(2) = 7e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED+KF
Sbjct: 78 CGNYRVIGDKKEDSKF 93
>ref|YP_007890364.1| RNA polymerase beta' subunit (chloroplast) [Ardisia polysticta]
gi|456367961|gb|AGG36875.1| RNA polymerase beta' subunit
(chloroplast) [Ardisia polysticta]
Length = 686
Score = 58.5 bits (140), Expect(2) = 7e-10
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
+K+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 EKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 31.2 bits (69), Expect(2) = 7e-10
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI DEKED+KF
Sbjct: 71 CGNYRVIGDEKEDSKF 86
>ref|YP_009004035.1| RNA polymerase beta [Cucumis hystrix] gi|586598677|gb|AHJ61377.1|
RNA polymerase beta [Cucumis hystrix]
Length = 681
Score = 60.1 bits (144), Expect(2) = 7e-10
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 29.6 bits (65), Expect(2) = 7e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED+KF
Sbjct: 71 CGNYRVIGDKKEDSKF 86
>gb|AHM89975.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 60.1 bits (144), Expect(2) = 7e-10
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 29.6 bits (65), Expect(2) = 7e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED+KF
Sbjct: 71 CGNYRVIGDKKEDSKF 86
>gb|AHM88970.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 60.1 bits (144), Expect(2) = 7e-10
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -1
Query: 354 KKKTQNFCEQCGVEFVDFRIRRYQMGYIKLVC 259
KK+ FCEQCGVEFVD RIRRYQMGYIKL C
Sbjct: 80 KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Score = 29.6 bits (65), Expect(2) = 7e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -3
Query: 382 CGNY*VIRDEKEDTKF 335
CGNY VI D+KED+KF
Sbjct: 71 CGNYRVIGDKKEDSKF 86