BLASTX nr result
ID: Forsythia22_contig00025035
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00025035
(2869 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 710 0.0
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 681 0.0
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 640 e-180
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 640 e-180
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D... 624 e-175
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 623 e-175
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 610 e-171
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 579 e-162
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 530 e-147
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 523 e-145
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 519 e-144
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 471 e-129
emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera] 431 e-124
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 444 e-121
emb|CAN80145.1| hypothetical protein VITISV_015720 [Vitis vinifera] 436 e-119
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 400 e-115
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 367 e-110
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 400 e-108
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 395 e-106
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc... 395 e-106
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 710 bits (1833), Expect = 0.0
Identities = 390/734 (53%), Positives = 492/734 (67%), Gaps = 3/734 (0%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YFI FT D+SRYG+I L+ KSE+ EKFKEF+ EV+ K I LR D+G EY+
Sbjct: 514 GYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQ 573
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
EF ++LK+ I+ Q TPP TP NGVSERRN TLLDMVRSMMS++ LP +FWGYAL TA
Sbjct: 574 EFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAA 633
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPK 2307
TLNRVPSKSV+KTPYE+W G+ P+LS++KIWGC+AYVKR++SDKL KSDKC VGYPK
Sbjct: 634 LTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVGYPK 693
Query: 2306 ESVGYYFYNSIEMKVIISRLTVFLEKTVGAM*ILK-RFKKPQIKLTN*IFHWLSLHLMKH 2130
E+ GYYFYN + KV ++R VFLEK + + R +++ T +S
Sbjct: 694 ETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETP---ETVSATTEPQ 750
Query: 2129 RLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITSNVLLIEEDEPTTYA*SESSVDSKRW 1950
+ + P DTPA R+S R P RY ++LL++ DEP TY + DS +W
Sbjct: 751 QEDQSVAPPVVDTPAPRRSERSRRAPDRYTGAEQRDILLLDNDEPKTYEEAMVGHDSNKW 810
Query: 1949 QEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCEGL*VK 1770
AMKSE+ SMY+N+VW L+DPP+GVK I CK ++ KK + ++ +G
Sbjct: 811 LGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQI 870
Query: 1769 TRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQLEGFES 1590
+ + RI LAI AY +Y+IWQMDVK AFLNGNLSEDVYM Q +GF
Sbjct: 871 QGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVD 930
Query: 1589 IE-PNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKVIFLIL 1413
E P K+CKLQKSIYGLKQ S N+RFDE IK F FIKN+++ CVYKKV+GS ++FLIL
Sbjct: 931 PESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLIL 990
Query: 1412 YVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQDMYID 1233
YVDDILL+GNDIPML+SVK L +FSMKD+GEA YIL I+IYRDRSKR++GLSQ YID
Sbjct: 991 YVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYID 1050
Query: 1232 KILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAILCTRL 1053
K+L+RF++ +SK+G P+ HGI LSK CP+ ER++M +PYA AIGSIM+A+LCTR
Sbjct: 1051 KVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRP 1110
Query: 1052 DVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKVMTMSAFNLI 876
DVSYALS TSR+Q++PGE HW AVKNIL R K Y E +L T ++F
Sbjct: 1111 DVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTD 1170
Query: 875 KTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNTVWIKKFI 696
K ++ SG+VF NGGAVSW EYIAASEAAK VWIKKF+
Sbjct: 1171 KD-----DYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFV 1225
Query: 695 TELGIVPSIVDPIT 654
+ELG++ S P++
Sbjct: 1226 SELGVMTSTTGPMS 1239
Score = 115 bits (287), Expect = 3e-22
Identities = 78/182 (42%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIY--SKWWCS*L 799
K L +TKDMFLVYGG E L V GY D SFQ+DKD Y ++ F C+ + W S
Sbjct: 1139 KYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDD---YRSQSGFVFCLNGGAVSWKSSK 1195
Query: 798 EKFQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQA 619
+ + Y + + + E+ T + +LYCDN+GAI QA
Sbjct: 1196 QDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTG----PMSLYCDNSGAIAQA 1251
Query: 618 KEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGHAKFDG 439
KEPRSH S++ILR+YHLIREI+ R +KI +V T N+ADPLTK L Q KH+ H + G
Sbjct: 1252 KEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMG 1311
Query: 438 IK 433
I+
Sbjct: 1312 IR 1313
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 681 bits (1757), Expect = 0.0
Identities = 387/738 (52%), Positives = 485/738 (65%), Gaps = 11/738 (1%)
Frame = -3
Query: 2837 YFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKDEFL 2658
YFI FT D+SRYG++ L++ KS++ E FKEF+ EV+ Q K+I LR D+G EYL F
Sbjct: 161 YFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFS 220
Query: 2657 DYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTACHTL 2478
D+L+E I+SQ TPP TP NGVSERRN TLLDMVRSMMS T LP FWGYAL T+ L
Sbjct: 221 DHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFML 280
Query: 2477 NRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPKESV 2298
NR PSKSV+KTPYE+W GK PNLS++KIWGC++Y KR+ +DKL KSDKC FVGYPKE+
Sbjct: 281 NRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETK 340
Query: 2297 GYYFYNSIEMKVIISRLTVFLEK------TVGAM*ILKRFKKPQIKL-TN*IFHWLSLHL 2139
GYYFY+ + KV + R FLE+ T G+ +L+ ++PQ + T+ H L L
Sbjct: 341 GYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKVLLEEVREPQGDVPTSQEEHQLDLR- 399
Query: 2138 MKHRLRKWEPPVPKDTPALRKSSRVIHFPLRY-DLLITSNVL-LIEEDEPTTYA*SESSV 1965
R EP + + P +R+S R H P R+ D ++ + L +IE DEPT+Y +
Sbjct: 400 -----RVVEPILVE--PEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYEEALMGP 452
Query: 1964 DSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCE 1785
DS +W EA KSEM SM +NKVWTL+D P+GVKPI CK ++ KK + + +
Sbjct: 453 DSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAK 512
Query: 1784 GL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQL 1605
G + + RI LA A+++Y+IWQMDVK AFLNGNL E VYMTQ
Sbjct: 513 GYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQP 572
Query: 1604 EGFESIEP-NKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKV 1428
EGF E KVCKL +SIYGLKQ S NLRF+E IK FDFI+N+++ CVYKK +GS V
Sbjct: 573 EGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAV 632
Query: 1427 IFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQ 1248
FL+LYVDDILLLGNDIP+L+SVK L FSMKDMGEA YIL I+IYRDR +++GLSQ
Sbjct: 633 AFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQ 692
Query: 1247 DMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAI 1068
D YIDK+L RF++ +SK+G P+ HGI LSK CP ER+RM +IPYA AIGSIM+A+
Sbjct: 693 DTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAM 752
Query: 1067 LCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLK-TCSWYMEEMNLEFKVMTMS 891
L TR DV+ ALS+TSR+Q++PGE HWI V+NI R K Y L T +
Sbjct: 753 LYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDA 812
Query: 890 AFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNTVW 711
+F K ++ SG+ F NGGAVSW EYIAASEAAK VW
Sbjct: 813 SFQTDKD-----DFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVW 867
Query: 710 IKKFITELGIVPSIVDPI 657
I+KFITELG+VPSI PI
Sbjct: 868 IRKFITELGVVPSISGPI 885
Score = 108 bits (270), Expect = 2e-20
Identities = 75/183 (40%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIYS---KWWCS* 802
K L +TKD FLVYGG+E L V GY D SFQ+DKD F ++ F+ C+ W
Sbjct: 786 KYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDF---RSQSGFFFCLNGGAVSW---- 838
Query: 801 LEKFQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQ 622
+ ++ + + ++KE ++ +LYCDNNGAI Q
Sbjct: 839 -KSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQ 897
Query: 621 AKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGHAKFD 442
AKEP+SH S++I R+YHLIREII R +KI RV T NVAD TK L Q KH+ H
Sbjct: 898 AKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAI 957
Query: 441 GIK 433
GI+
Sbjct: 958 GIR 960
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 640 bits (1651), Expect = e-180
Identities = 363/742 (48%), Positives = 472/742 (63%), Gaps = 12/742 (1%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YFI FT ++SRYG++ L+ KSE+ EKF+EF+ EV+ K I LR D+G EYL
Sbjct: 479 GFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSL 538
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
E+ ++LKE I+ Q TPP TP N VSERRN LLDMVRSMMS+T +P +FWGYAL TA
Sbjct: 539 EYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDMPLSFWGYALETAA 598
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPK 2307
TLNRVPSKSVDKTPYE+W GKRP+LS++KIW C+
Sbjct: 599 FTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE------------------------- 633
Query: 2306 ESVGYYFYNSIEMKVIISRLTVFLEKTV------GAM*ILKRFKKPQIKLTN*IFHWLSL 2145
E+ GYYFYN E KV ++R VFLEK G+M LK ++ + +
Sbjct: 634 ETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQETPENASTSTQPQVEQ 693
Query: 2144 HLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTYA*SES 1971
+++ + PV + PA R+S R+ P RY LL + ++LL++ DEPTTY +
Sbjct: 694 DVVQQVEQVVVEPVV-EAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMV 752
Query: 1970 SVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIG 1791
D+++W AMKSE+ SM+ N+VW L+DPP+GVK I CK ++ K ++
Sbjct: 753 GPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLV 812
Query: 1790 CEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMT 1611
+G + + RI LAI AY +Y+IWQMDVK AFLNGNL EDVYMT
Sbjct: 813 AKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMT 872
Query: 1610 QLEGFESIEPN---KVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVN 1440
Q +GF ++P K+CKLQKSIY LKQ S N+RFDE +K F+KN+++ CVYKK++
Sbjct: 873 QPKGF--VDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKIS 930
Query: 1439 GSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRML 1260
GS ++FLILYVDDILL+GNDIPML+SVK L +FSMKD+GEA YIL I+IYRDRSKR++
Sbjct: 931 GSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLI 990
Query: 1259 GLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSI 1080
GLSQ YIDK+L+RF++++SK+G P+ HGI L K CP+ ER++M IPYA AIGSI
Sbjct: 991 GLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSI 1050
Query: 1079 MHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKV 903
M+A+LCTRLDVSYALS TSR+Q++ GE HWIAVKNIL R K Y + L
Sbjct: 1051 MYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEELVVNG 1110
Query: 902 MTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAK 723
T ++F K ++ SG+VF NGGAVSW EYIAASEAAK
Sbjct: 1111 YTDASFQTDKD-----DFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAK 1165
Query: 722 NTVWIKKFITELGIVPSIVDPI 657
VWIKKF+++LG++ S P+
Sbjct: 1166 EAVWIKKFVSQLGVMTSASSPM 1187
Score = 98.2 bits (243), Expect = 3e-17
Identities = 71/167 (42%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIY--SKWWCS*L 799
K L +TKDMFLVYG E L V GY D SFQ+DKD F ++ F C+ + W S
Sbjct: 1088 KYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDF---RSQSGFVFCLNGGAVSWKSSK 1144
Query: 798 EKFQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQA 619
+ + Y + + + ++ T SS +LYCDN+GAI QA
Sbjct: 1145 QDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASS----PMDLYCDNSGAIAQA 1200
Query: 618 KEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLL 478
KEPRSH S++ILR+YHLIRE++ R +KI ++ T NVADPLTK L
Sbjct: 1201 KEPRSHQKSKHILRRYHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1247
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 640 bits (1651), Expect = e-180
Identities = 363/742 (48%), Positives = 472/742 (63%), Gaps = 12/742 (1%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YFI FT ++SRYG++ L+ KSE+ EKF+EF+ EV+ K I LR D+G EYL
Sbjct: 392 GFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSL 451
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
E+ ++LKE I+ Q TPP TP N VSERRN LLDMVRSMMS+T +P +FWGYAL TA
Sbjct: 452 EYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDMPLSFWGYALETAA 511
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPK 2307
TLNRVPSKSVDKTPYE+W GKRP+LS++KIW C+
Sbjct: 512 FTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE------------------------- 546
Query: 2306 ESVGYYFYNSIEMKVIISRLTVFLEKTV------GAM*ILKRFKKPQIKLTN*IFHWLSL 2145
E+ GYYFYN E KV ++R VFLEK G+M LK ++ + +
Sbjct: 547 ETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQETPENASTSTQPQVEQ 606
Query: 2144 HLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTYA*SES 1971
+++ + PV + PA R+S R+ P RY LL + ++LL++ DEPTTY +
Sbjct: 607 DVVQQVEQVVVEPVV-EAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMV 665
Query: 1970 SVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIG 1791
D+++W AMKSE+ SM+ N+VW L+DPP+GVK I CK ++ K ++
Sbjct: 666 GPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLV 725
Query: 1790 CEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMT 1611
+G + + RI LAI AY +Y+IWQMDVK AFLNGNL EDVYMT
Sbjct: 726 AKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMT 785
Query: 1610 QLEGFESIEPN---KVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVN 1440
Q +GF ++P K+CKLQKSIY LKQ S N+RFDE +K F+KN+++ CVYKK++
Sbjct: 786 QPKGF--VDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKIS 843
Query: 1439 GSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRML 1260
GS ++FLILYVDDILL+GNDIPML+SVK L +FSMKD+GEA YIL I+IYRDRSKR++
Sbjct: 844 GSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLI 903
Query: 1259 GLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSI 1080
GLSQ YIDK+L+RF++++SK+G P+ HGI L K CP+ ER++M IPYA AIGSI
Sbjct: 904 GLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSI 963
Query: 1079 MHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKV 903
M+A+LCTRLDVSYALS TSR+Q++ GE HWIAVKNIL R K Y + L
Sbjct: 964 MYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEELVVNG 1023
Query: 902 MTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAK 723
T ++F K ++ SG+VF NGGAVSW EYIAASEAAK
Sbjct: 1024 YTDASFQTDKD-----DFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAK 1078
Query: 722 NTVWIKKFITELGIVPSIVDPI 657
VWIKKF+++LG++ S P+
Sbjct: 1079 EAVWIKKFVSQLGVMTSASSPM 1100
Score = 98.2 bits (243), Expect = 3e-17
Identities = 71/167 (42%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIY--SKWWCS*L 799
K L +TKDMFLVYG E L V GY D SFQ+DKD F ++ F C+ + W S
Sbjct: 1001 KYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDF---RSQSGFVFCLNGGAVSWKSSK 1057
Query: 798 EKFQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQA 619
+ + Y + + + ++ T SS +LYCDN+GAI QA
Sbjct: 1058 QDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASS----PMDLYCDNSGAIAQA 1113
Query: 618 KEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLL 478
KEPRSH S++ILR+YHLIRE++ R +KI ++ T NVADPLTK L
Sbjct: 1114 KEPRSHQKSKHILRRYHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1160
>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 624 bits (1609), Expect = e-175
Identities = 357/762 (46%), Positives = 467/762 (61%), Gaps = 23/762 (3%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G +++ FT D+SRYG+I LI+ KS+ EKFKEFK EVE Q + I LR D+G EYL
Sbjct: 489 GTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEFKNEVENQLGRKIKMLRSDRGGEYLSI 548
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
EFLDYLKE I+SQ TPP TP NGV+ERRN TLLDMVRSMMSR LP FWGYAL TA
Sbjct: 549 EFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLDMVRSMMSRASLPIHFWGYALETAA 608
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPK 2307
H LN VP+K V KTP+E+W GK P+L++IK+WGC+A+V+R DKL +S++C F+GYPK
Sbjct: 609 HILNLVPTKKVAKTPHEMWTGKVPSLAHIKVWGCEAFVRRETQDKLAERSERCFFLGYPK 668
Query: 2306 ESVGYYFYNSIEMKVIISRLTVFLEKTV------GAM*ILKRFKKPQIKLTN*IFHWLSL 2145
+S GY FY E V ++R VF E+ + G+ L+ ++ T L
Sbjct: 669 QSFGYLFYRPSEDVVFVARRAVFRERELIFKEDSGSTIDLEEIQESSDDAT--------L 720
Query: 2144 HLMKHRLRKWEPPVPKDTPA-LRKSSRVIHFPLRYDLLITSNV-------LLIEEDEPTT 1989
++ + P P D LR+S RV P Y ITS+ LI DEP
Sbjct: 721 GETSNQHEEEVPVGPTDVSLPLRRSGRVSMPPEFYGFHITSDGDTFVSDRTLINLDEPAN 780
Query: 1988 YA*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSY 1809
Y + + +S +W+EAM SE+ SMY+N+VW L+D G K + CK ++ KK
Sbjct: 781 YQEAVAGPESAKWKEAMDSEIKSMYDNQVWNLVDNVPGRKTVGCKWIFKKKTDMDGKVHT 840
Query: 1808 LQGKIGCEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLS 1629
+ ++ +G + + RI LAI A+H+Y+IWQMDVK AFLNG L+
Sbjct: 841 FKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKTAFLNGKLT 900
Query: 1628 EDVYMTQLEGFESIE-PNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVY 1452
EDVYM Q EGF + PNKVCKL++SIYGLKQ S NL F E +K F F +++D+ CVY
Sbjct: 901 EDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEKVKEFGFSRSEDESCVY 960
Query: 1451 KKVNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRS 1272
K +GS V FL+LYVDDILL+GNDIP L+ VK L K F+MKD+GEA YIL I+I RDR
Sbjct: 961 VKASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDLGEAAYILGIRILRDRK 1020
Query: 1271 KRMLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALA 1092
KR++GLSQ Y++K+L+RFS+E SK+G PI LSK P E M R+PYA A
Sbjct: 1021 KRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSKTQSPSTDEEIAEMSRVPYASA 1080
Query: 1091 IGSIMHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSWYMEEMN-L 915
+GSIM+A+ CTR DV++ALS+ SR+Q NPG HWIAVKNIL R K + + L
Sbjct: 1081 VGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKYLRRTKNMVLVLGGSDTL 1140
Query: 914 EFKVMTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAAS 735
+ T ++F + ++ SG+VF NGGAV+W EYIAAS
Sbjct: 1141 RVEGYTDASFQTDRDSG-----RSQSGWVFLLNGGAVTWKSSKQETVADSTCESEYIAAS 1195
Query: 734 EAAKNTVWIKKFITELGIVPSIVDPIT-------CIVITMEP 630
EA+K W+K FI +LG+VPSI +P+ + +T EP
Sbjct: 1196 EASKEAAWLKNFIGDLGVVPSIQEPLELFCDNEGAVALTKEP 1237
Score = 92.0 bits (227), Expect = 2e-15
Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 4/183 (2%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIYSKW---WCS* 802
K L +TK+M LV GG++ LRV+GY D SFQ+D+D W+ + + W S
Sbjct: 1122 KYLRRTKNMVLVLGGSDTLRVEGYTDASFQTDRDS----GRSQSGWVFLLNGGAVTWKSS 1177
Query: 801 LEKFQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQ 622
++ + C S + +SKE + + L+CDN GA+
Sbjct: 1178 KQETVADSTC----ESEYIAASEASKEAAWLKNFIGDLGVVPSIQEPLELFCDNEGAVAL 1233
Query: 621 AKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGHAKFD 442
KEPR H SR+I R+YH IR + ++ ++RV + DN ADPLTK LS+ KH+ HA+
Sbjct: 1234 TKEPRDHGKSRHIDRKYHYIRHRVEEGHLLVKRVSSEDNPADPLTKALSRIKHNQHARSI 1293
Query: 441 GIK 433
G++
Sbjct: 1294 GLR 1296
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 623 bits (1607), Expect = e-175
Identities = 351/697 (50%), Positives = 452/697 (64%), Gaps = 10/697 (1%)
Frame = -3
Query: 2858 RC*SGVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEE 2679
RC G YFI FT D+SRYG++ L+ KSE+ EKFKEF+ EV+ K I LR D G E
Sbjct: 988 RC--GFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLRSDHGGE 1045
Query: 2678 YLKDEFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYAL 2499
YL EF ++LK I+ Q TPP TP NGVSERRN TLL+MVRSMMS+T L +FWGYAL
Sbjct: 1046 YLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQTNLLLSFWGYAL 1105
Query: 2498 NTACHTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFV 2319
TA TLNRVPSKSVDKTPYE+W GKRP+LS++KIWGC+ YVKR++SDKL KS+KC FV
Sbjct: 1106 ETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSNKCFFV 1165
Query: 2318 GYPKESVGYYFYNSIEMKVIISRLTVFLEKTV------GAM*ILKRFKK-PQIKLTN*IF 2160
GYPKE+ GYY YN E KV ++R VFL+K G++ L+ ++ P+ T+
Sbjct: 1166 GYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRKDSGSIVRLEEIQETPENASTSTQP 1225
Query: 2159 HWLSLHLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTY 1986
+++ + PV + PA R+S R+ P RY LL ++LL++ DEPTTY
Sbjct: 1226 QQAEQDVVQQVEQVVVEPVV-EAPASRRSERIRRTPARYALLTIGQRDILLLDNDEPTTY 1284
Query: 1985 A*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYL 1806
+ DS++W AMKSE+ SM+ N+VW L+DPP+GVK I CK V+ KK
Sbjct: 1285 EEAMVGPDSEKWPGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTYVDGNVHIY 1344
Query: 1805 QGKIGCEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSE 1626
+ ++ +G + + +I LAI AY +Y+IWQMDVK AFLNGNL E
Sbjct: 1345 KARLVAKGFRQIQGVDYDETFSPVAMLKSIQIVLAIAAYFDYEIWQMDVKTAFLNGNLDE 1404
Query: 1625 DVYMTQLEGFESIEPNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKK 1446
D KSIYGLKQ S N+RFDE +K F+KN+++ CVYKK
Sbjct: 1405 D---------------------KSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKK 1443
Query: 1445 VNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKR 1266
++GS ++FLILYVDDILL+GNDIPML+SVK L +FSMKD+GEA YI+ I+IYRDRSKR
Sbjct: 1444 ISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYIMGIRIYRDRSKR 1503
Query: 1265 MLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIG 1086
++GLSQ YIDK+L+RF++++SK+G P+ HGI K CP+ ER++M IPYA AIG
Sbjct: 1504 LIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINHGKNQCPQTTDERNKMSVIPYAWAIG 1563
Query: 1085 SIMHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEF 909
SIM+A+LCTR+DVSYALS TSR+Q++PGE HWIAVKNIL R K Y + L
Sbjct: 1564 SIMYAMLCTRIDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVV 1623
Query: 908 KVMTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSW 798
++F K + SG+VF NG AVSW
Sbjct: 1624 NGYIDASFQTDKD-----DFRLQSGFVFCLNGRAVSW 1655
Score = 106 bits (265), Expect = 9e-20
Identities = 74/180 (41%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIYSKWWCS*LEK 793
K L +TKDMFLVYGG E L V GY D SFQ+DKD F + + F C+
Sbjct: 1603 KYLRRTKDMFLVYGGQEELVVNGYIDASFQTDKDDFRLQSG---FVFCL----------- 1648
Query: 792 FQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQAKE 613
N R+ + +S + NLYCDN+GAI QAKE
Sbjct: 1649 ---------NGRAVSWKSVMTSASSPM------------------NLYCDNSGAIVQAKE 1681
Query: 612 PRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGHAKFDGIK 433
RSH S++ILR+YHLI EI+ R +KI ++ T NVAD LTK L Q KH+ H + GI+
Sbjct: 1682 HRSHQKSKHILRRYHLIHEIVGRGDVKICKIHTDLNVADLLTKPLPQPKHEAHTRAMGIR 1741
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 610 bits (1573), Expect = e-171
Identities = 355/761 (46%), Positives = 456/761 (59%), Gaps = 18/761 (2%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YFI F D+SRYG + L+ KSE+ EKFKE+K EVE + K I TLR D+G EY+
Sbjct: 519 GYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDS 578
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
+F DYL E I SQ + P TP QNGVSERRN TLLDMVRSMMS LP +FWGYAL TA
Sbjct: 579 KFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAI 638
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPK 2307
H LN VPSKSV +TPYELWKG++ +L Y +IWGC A+V KLE +S CLFVGYPK
Sbjct: 639 HILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYPK 698
Query: 2306 ESVGYYFYNSIEMKVIISRLTVFLEKTVG------AM*ILKR-FKKPQIKLTN*IFHWLS 2148
ES G FY+ E KV +S FLE+ + +LK FK K ++
Sbjct: 699 ESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTKVVDK 758
Query: 2147 LHLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITSNVLLIEE--DEPTTYA*SE 1974
++ E VP R+S RV+H P RY L+ + +++ ++ ++P TY +
Sbjct: 759 ANISDQSHTSQELRVP------RRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAM 812
Query: 1973 SSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKI 1794
+ VD +W +AM EM SMY N VWTL+D P VKPI CK +Y +K + ++
Sbjct: 813 NDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARL 872
Query: 1793 GCEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYM 1614
+G K + + RI L+I ++NY+IWQMDVK AFLNGNL E +YM
Sbjct: 873 VAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYM 932
Query: 1613 TQLEGF-ESIEPNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNG 1437
Q EGF + KVCKLQKSIYGLKQ S N+RFD IK + F +N D+ CVYKK+
Sbjct: 933 VQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVN 992
Query: 1436 SKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLG 1257
S V FLILYVDDILL+GND+ L VK L+ F MKD+GEA YIL I+I R+R + L
Sbjct: 993 SVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLA 1052
Query: 1256 LSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSIM 1077
+SQ YIDK+L R+ ++ SK+G P HGI+LSKE CPK E + M IPY+ A+GS+M
Sbjct: 1053 MSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLM 1112
Query: 1076 HAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSWYMEEMNLEFKVMT 897
+A+LCTR D+ Y++ + SR+Q+NPG HW AVKNIL R + +L T
Sbjct: 1113 YAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYT 1172
Query: 896 MSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNT 717
S F K K+ SG VFT NGGAV W EY+AA EAAK
Sbjct: 1173 DSDFQSDKDAR-----KSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEA 1227
Query: 716 VWIKKFITELGIVPSIVDPIT-------CIVITMEP-SHKR 618
VW++KF+T+L +VP++ PIT + + EP SHKR
Sbjct: 1228 VWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKR 1268
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 579 bits (1492), Expect = e-162
Identities = 348/709 (49%), Positives = 434/709 (61%), Gaps = 12/709 (1%)
Frame = -3
Query: 2702 LRFDQGEEYLKDEFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLP 2523
LR D+G EYL EF ++LKE I+ Q TPP TP NGVSERRN TLLD+VRSMMS+T LP
Sbjct: 358 LRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDIVRSMMSQTDLP 417
Query: 2522 KTFWGYALNTACHTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEA 2343
+FW YAL A TLN+VPSKSV+KTPYE+W GKRP+LS++KIWGC+ YVKR++SDKL
Sbjct: 418 LSFWAYALEKAAFTLNKVPSKSVNKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTP 477
Query: 2342 KSDKCLFVGYPKESVGYYFYNSIEMKVIISRLTVFLEKTVGAM*ILKRFKKPQIKLTN*I 2163
KSDKC FVGYPKE+ GYYFYN E KV ++R VFLEK IL++
Sbjct: 478 KSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKEF----ILRKNSGSM------- 526
Query: 2162 FHWLSLHLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITSNVLLIEEDEPTTYA 1983
L KH+L + P Y V L E DEPTTY
Sbjct: 527 -------LWKHQLHEG--------------------PKGY------GVHLRENDEPTTY- 552
Query: 1982 *SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQ 1803
E+ V AMKSE+ SM+ N+VW L+DPP+GVK I K V+ KK +
Sbjct: 553 -EEAMVGLG----AMKSEIESMHVNQVWNLVDPPDGVKAIEWKWVFKKKTDVDGNVHIYK 607
Query: 1802 GKIGCEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSED 1623
++ +G + + +I LAI AY +Y+IWQMDVK AF+NGN+ ED
Sbjct: 608 ARLVAKGFRQIQGVDYDETFSLVAMLKSIQIVLAITAYFDYEIWQMDVKTAFVNGNIDED 667
Query: 1622 VYMTQLEGFESIEPN---KVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVY 1452
VYMTQL+GF ++P K+CKLQKSIYGLKQ S N+RFDE +K + K K L
Sbjct: 668 VYMTQLKGF--VDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKAWALSKTKKSL--- 722
Query: 1451 KKVNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRS 1272
+LYVDDILL+GNDIPML+SVK L +FSMKD+GEA YIL I+IYRDRS
Sbjct: 723 -----------VLYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRS 771
Query: 1271 KRMLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALA 1092
KR++GLSQ YIDK+L+RF++++SK+G P+ HGI L K CP+ ER++M IPYA A
Sbjct: 772 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 831
Query: 1091 IGSIMHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNL 915
IGSIM+A+LCT DVSYALS TSR+Q++PGE HWIAVKNIL R K Y + L
Sbjct: 832 IGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEEL 891
Query: 914 EFKVMTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAAS 735
K T ++F K ++ SG+VF NGGAVSW EYIAAS
Sbjct: 892 VVKGYTDASFQTDKD-----DFRSQSGFVFCLNGGAVSWKSSKQDTVVDSITEAEYIAAS 946
Query: 734 EAAKNTVWIKKFITELGIVPSIVDPIT-------CIVITMEP-SHKRRN 612
EAAK VWIKKF+++LG++ S P+ I EP SH++ N
Sbjct: 947 EAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQKSN 995
Score = 105 bits (262), Expect = 2e-19
Identities = 79/188 (42%), Positives = 104/188 (55%), Gaps = 9/188 (4%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIYS---KWWCS* 802
K L +TKDMFLVYGG E L V+GY D SFQ+DKD F ++ F C+ W
Sbjct: 873 KYLRRTKDMFLVYGGQEELVVKGYTDASFQTDKDDF---RSQSGFVFCLNGGAVSW---- 925
Query: 801 LEKFQRRNDC*FNYRSRIY-SCFRSSKEY----SLDQEVHY*TWNSS*HC*SNNLYCDNN 637
K +++ + Y + ++KE ++ T SS +LYCDN+
Sbjct: 926 --KSSKQDTVVDSITEAEYIAASEAAKEAVWIKKFVSQLGVMTSASS----PMDLYCDNS 979
Query: 636 GAITQAKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDG 457
GAI QAKEPRSH S IL +YHLIREI+ R +KI ++ T NVADPLTK L Q KH
Sbjct: 980 GAIAQAKEPRSHQKSN-ILWRYHLIREIVGRGVVKICKIHTDFNVADPLTKPLPQPKHQA 1038
Query: 456 HAKFDGIK 433
H + G++
Sbjct: 1039 HTRAMGVR 1046
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 530 bits (1365), Expect = e-147
Identities = 291/544 (53%), Positives = 371/544 (68%), Gaps = 5/544 (0%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YFIIFT D+SRYG++ L+ KSE+ EKFKEF EV+ +K I LR D+G EY
Sbjct: 63 GFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSL 122
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
EF ++LKE I+ Q TPP TP NGVS+RRN TLLDMVRSMMS+T LP +FWGYAL TA
Sbjct: 123 EFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALETAV 182
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKL--EAKSDKCLFVGY 2313
T+NRVPSKS+DKTPYE+W GKRP+LS++KIWGC+ YVKR++SDKL ++KSDKC FVGY
Sbjct: 183 FTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSDKCFFVGY 242
Query: 2312 PKESVGYYFYNSIEMKVIISRLTVFLEKTVGAM*ILKRFKKPQIKLTN*IFHWLSLHLMK 2133
PKE+ GYYFYN E KV ++R VFLEK + + P+ T+ +++
Sbjct: 243 PKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSGSMETPENASTSTQPQQAEQDVVQ 302
Query: 2132 HRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTYA*SESSVDS 1959
+ PV + PA R+S R+ P RY LL T ++LL+ DEPTTY + S
Sbjct: 303 QVEQVVVEPV-VEAPASRRSERIRRTPARYALLTTGQCDILLLGNDEPTTYEEAMVGPGS 361
Query: 1958 KRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCEGL 1779
++W AMKS++ SM+ N+VW L+DP + VK I CK V+ KK + ++ +G
Sbjct: 362 EKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGF 421
Query: 1778 *VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQLEG 1599
+ + RI LAI AY +Y+IWQMDVK AFL+GNL EDVYMTQ +G
Sbjct: 422 RQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKG 481
Query: 1598 F-ESIEPNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKVIF 1422
F + K+CKLQKSIYGLKQ S N+RFDE IK F+KN+++ CVYKK+NGS ++F
Sbjct: 482 FVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMF 541
Query: 1421 LILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQDM 1242
LILYVDDILL+GNDIPML+SVK L +FSMKD+GEA YIL I+IYRDRSKR++GLSQ
Sbjct: 542 LILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQST 601
Query: 1241 YIDK 1230
YI+K
Sbjct: 602 YINK 605
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 523 bits (1348), Expect = e-145
Identities = 312/677 (46%), Positives = 402/677 (59%), Gaps = 9/677 (1%)
Frame = -3
Query: 2660 LDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTACHT 2481
L Y E I+ Q TPP TP NGVSERRN TLLDMVRSMMS+T LP +FWGYAL TA T
Sbjct: 247 LVYTDECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLPLSFWGYALETAAFT 306
Query: 2480 LNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPKES 2301
LNRVPSKS+DKTPYE+W GKRP+LS++KIWGC+ YVKR++SDKL KSDK FVGYPKE+
Sbjct: 307 LNRVPSKSLDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKYFFVGYPKET 366
Query: 2300 VGYYFYNSIEMKVIISRLTVFLEK---TVGAM*ILKRFKKPQIKLTN*IFHWLSLHLMKH 2130
GYYFYN E KV ++R VFLEK + I+ R ++ Q N +
Sbjct: 367 KGYYFYNREEDKVFVARHDVFLEKEFISTKDSGIMVRLEEIQETPKNASTSTQPQQDEQD 426
Query: 2129 RLRKWEPPVPK---DTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTYA*SESSV 1965
+++ E V + + PA R+S R+ P RY LL T ++LL++ D+PTTY +
Sbjct: 427 VVQQVEQVVVEPVVEAPASRRSERIWRTPARYALLTTGQRDILLLDNDKPTTYEEAMVGP 486
Query: 1964 DSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCE 1785
DSK+W AMKSE+ SM+ N+VW L+DPP+GVK I CK V+ KK + ++ +
Sbjct: 487 DSKKWLGAMKSEIESMHVNQVWNLVDPPDGVKGIECKWVFKKKTDLDGNVHIYKARLVAK 546
Query: 1784 GL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQL 1605
G + + RI LAI AY +Y+IWQMDVK AFLN NL ED
Sbjct: 547 GFRQIQSVDYDGTFSSVGMLKSIRIILAIPAYFDYEIWQMDVKTAFLNENLDED------ 600
Query: 1604 EGFESIEPNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKVI 1425
KSIYGLKQ S N+RFDE +K F+KN+++ CVYKK++GS +
Sbjct: 601 ---------------KSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSAL- 644
Query: 1424 FLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQD 1245
D+ EA YIL I+IYRDRS+R++G SQ
Sbjct: 645 ---------------------------------DLREAAYILSIRIYRDRSRRLIG-SQS 670
Query: 1244 MYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAIL 1065
YIDK+L+RF++++SK+G P+ HGI L K CP+ ER++M IPYA AIGSIM+A+L
Sbjct: 671 TYIDKVLKRFNMQDSKKGFLPLSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAML 730
Query: 1064 CTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKVMTMSA 888
CTR DV YALS TS++Q++PGE HWIAVKNIL R K Y + L T ++
Sbjct: 731 CTRPDVPYALSATSQYQSDPGESHWIAVKNILKYLRRTKDMFLIYGGQEELVVNNYTDAS 790
Query: 887 FNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNTVWI 708
F K ++ SG+VF NGGAVSW EYIAASEAAK WI
Sbjct: 791 FQTDKD-----DFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAAWI 845
Query: 707 KKFITELGIVPSIVDPI 657
KKF+++LG++ S P+
Sbjct: 846 KKFVSQLGVMTSASSPM 862
Score = 107 bits (267), Expect = 5e-20
Identities = 73/177 (41%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIY--SKWWCS*L 799
K L +TKDMFL+YGG E L V Y D SFQ+DKD F ++ F C+ + W S
Sbjct: 763 KYLRRTKDMFLIYGGQEELVVNNYTDASFQTDKDDF---RSQSGFVFCLNGGAVSWKSSK 819
Query: 798 EKFQRRNDC*FNYRSRIYSCFRSSKEYSLDQEVHY*TWNSS*HC*SNNLYCDNNGAITQA 619
+ + Y + + ++ ++ T SS +LYCDN+GAI QA
Sbjct: 820 QDTVADSTTEAEYIAASEAAKEAAWIKKFVSQLGVMTSASS----PMDLYCDNSGAIAQA 875
Query: 618 KEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGHAK 448
KEPRSH S++ILR+YHLIREI+ R +KI ++ T NV DPLTK L + KH+ H +
Sbjct: 876 KEPRSHRKSKHILRRYHLIREIVGRGDVKICKIHTDLNVVDPLTKPLPRPKHETHCR 932
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 519 bits (1337), Expect = e-144
Identities = 290/592 (48%), Positives = 383/592 (64%), Gaps = 10/592 (1%)
Frame = -3
Query: 2837 YFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKDEFL 2658
YFI FT D+SRYG++ L+ KSE EKFKEF+ EV+ K I LR D+G +YL EF
Sbjct: 226 YFITFTGDFSRYGYVYLMRQKSETFEKFKEFQNEVQNHLGKTIKYLRSDRGGKYLSLEFG 285
Query: 2657 DYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTACHTL 2478
++LKE I+ Q T P TP NGVSERRN TLLDM+ + SR T+
Sbjct: 286 NHLKECRIVPQLTLPGTPQWNGVSERRNRTLLDMLLGLRSRDT-------------AFTI 332
Query: 2477 NRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPKESV 2298
N+VPSKSVDK PYE+W GKRP+LS++KIWGC+ YVKR++SDKL KSDKC FVGY KE+
Sbjct: 333 NKVPSKSVDKIPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYHKETK 392
Query: 2297 GYYFYNSIEMKVIISRLTVFLEKTV------GAM*ILKRFKK-PQIKLTN*IFHWLSLHL 2139
GYYFYN E KV ++R VFLEK G+M L+ ++ P+ T+ +
Sbjct: 393 GYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLEEIQETPENASTSTQPQQAEQDV 452
Query: 2138 MKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTYA*SESSV 1965
++ + PV + A R+S R+ P RY LL T ++LL++ DEPT Y +
Sbjct: 453 VQQVEQVVVEPVV-EALASRRSKRIRRTPARYALLTTGQRDILLLDNDEPTIYEEAMVGP 511
Query: 1964 DSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCE 1785
DS++W AMKS++ SM+ N+VW L+DPP+GVK I CK V+ K + ++ +
Sbjct: 512 DSEKWLGAMKSKIESMHVNQVWNLVDPPDGVKAIKCKWVFKKNTDVDGNVHIYKARLVAK 571
Query: 1784 GL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQL 1605
G + + RI L I AY +Y+IWQMDVK A LNGNL EDVYMTQ
Sbjct: 572 GFRQIQGVDYDETFSPVAMLKSIRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQP 631
Query: 1604 EGF-ESIEPNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKV 1428
+GF + K+CKLQKSIYGLK+ S N+RFD+ +K F+KN+++ CVYKK++GS +
Sbjct: 632 KGFVDPQSAKKICKLQKSIYGLKKASRSWNIRFDKVVKALGFVKNEEEPCVYKKISGSAL 691
Query: 1427 IFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQ 1248
+FLILYVD+ILL+GNDIPML+SVK L +F MKD+GE T IL I+IYRDRSKR++GLSQ
Sbjct: 692 VFLILYVDEILLIGNDIPMLESVKTSLKNSFLMKDLGEPTCILGIRIYRDRSKRLIGLSQ 751
Query: 1247 DMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALA 1092
YIDK+L+RF+++ SK+G P+ HGI L K CP+ ER++M IPYA A
Sbjct: 752 STYIDKVLKRFNMQNSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 803
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 471 bits (1211), Expect = e-129
Identities = 265/515 (51%), Positives = 339/515 (65%), Gaps = 11/515 (2%)
Frame = -3
Query: 2510 GYALNTACHTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDK 2331
GYAL TA LNRVPSKSV KTPYE+W GKRP+LS++KIWG + YVKR++SDKL KSDK
Sbjct: 256 GYALETAAFILNRVPSKSVHKTPYEIWTGKRPSLSFLKIWGYEVYVKRLQSDKLTPKSDK 315
Query: 2330 CLFVGYPKESVGYYFYNSIEMKVIISRLTVFL------EKTVGAM*ILKRFKKPQIKLTN 2169
C FVGYPKE GYYFYN E KV I+R VFL K G+M L+ ++ ++
Sbjct: 316 CFFVGYPKEKKGYYFYNREEGKVFIARHGVFLGKEFISRKDSGSMVGLEEIQETPENVSR 375
Query: 2168 *IFHWLSLHLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEP 1995
+ + ++ + + A ++ R+ P RY LL T ++LL++ DEP
Sbjct: 376 STQPQQAEQDVAQQVEQVVVEPVVEALASQRFERIRRTPARYALLTTGQHDILLLDNDEP 435
Query: 1994 TTYA*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*C 1815
TTY + DS++W AMKSE+ SM+ N+VW L+DPP+G + I
Sbjct: 436 TTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGFRQI---------------- 479
Query: 1814 SYLQGKIGCEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGN 1635
QG E T +L S RI LAI AY +Y+IWQMDVK AFLNGN
Sbjct: 480 ---QGVDYDETFSPVT-------MLKSI-----RIVLAIAAYFDYEIWQMDVKTAFLNGN 524
Query: 1634 LSEDVYMTQLEGFESIEPN---KVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDK 1464
L EDVYMTQ +GF ++P K+CKLQKSIYGLKQ S N+RFDE +K F+KN+++
Sbjct: 525 LDEDVYMTQPKGF--VDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKASGFVKNEEE 582
Query: 1463 LCVYKKVNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIY 1284
CVYKK+N S + FLILYVDDILL+GNDIPMLKS K L +FSMKD+GEATYIL I+IY
Sbjct: 583 PCVYKKINRSALGFLILYVDDILLIGNDIPMLKSAKTSLKNSFSMKDLGEATYILGIRIY 642
Query: 1283 RDRSKRMLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIP 1104
RDRSKR++GLSQ YI+K+L+RF++++SK+G + HGI L K CP+ E+++ IP
Sbjct: 643 RDRSKRLIGLSQSTYINKMLKRFNMQDSKKGFLSMSHGINLGKNQCPQTIDEQNKKSVIP 702
Query: 1103 YALAIGSIMHAILCTRLDVSYALSVTSRFQANPGE 999
YA AIGSIM+A+LCTR DVSYALS TSR+Q +PGE
Sbjct: 703 YASAIGSIMYAMLCTRPDVSYALSATSRYQLDPGE 737
>emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
Length = 1354
Score = 431 bits (1108), Expect(2) = e-124
Identities = 271/757 (35%), Positives = 402/757 (53%), Gaps = 26/757 (3%)
Frame = -3
Query: 2849 SGVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYL- 2673
+G YFI F DYSRYG++ LI KS++L+ FK FK EVE Q K I ++R D+G EY
Sbjct: 552 NGQXYFITFIDDYSRYGYLFLIHEKSQSLDVFKTFKXEVELQLNKRIKSVRSDRGGEYYG 611
Query: 2672 ---------KDEFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPK 2520
F YL+E I+ Q+T P +P NGV+ERRN L DMVRSM+S + LP+
Sbjct: 612 RYDGSGEQHPGPFAKYLEECGIVPQYTMPGSPSMNGVAERRNRILKDMVRSMISHSTLPE 671
Query: 2519 TFWGYALNTACHTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVK--RVESDKLE 2346
WG AL TA + LNRVP+K+ KTPYELW G++P+L + IWGC A + + KL+
Sbjct: 672 KLWGEALKTAAYILNRVPTKAAAKTPYELWTGRKPSLKHFHIWGCPAEARPYKPHEKKLD 731
Query: 2345 AKSDKCLFVGYPKESVGYYFYNSI---EMKVIISR----LTVFLEKTVGAM*ILKRFKKP 2187
+K+ F+GY + S G+ FY+ + + I+ T+ + ++ I+ +
Sbjct: 732 SKTVSSYFIGYAERSRGFKFYDPAIRNQARNIVFEEEEGSTIAFDNVQVSLPIIDQEVNL 791
Query: 2186 QIKLTN*IFHWLSLHLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITSNVLLIE 2007
+ T+ I L + + + + P++ +LR+S+R + D ++ +E
Sbjct: 792 DPQPTDNIVQPLIAN--EDIAPEEQTQQPQENMSLRRSTRERRNAISDDYIVYLQEREVE 849
Query: 2006 ----EDEPTTYA*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVK 1839
ED+P + + S +S++W EAM E SM +NKVW L+ P G KPI CK ++
Sbjct: 850 SGMMEDDPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKT 909
Query: 1838 KGRHGW*CSYLQGKIGCEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDV 1659
K + ++ +G K D ++
Sbjct: 910 KRDSNGNVERYKARLVAKGFTQK---------------------------EGID-FKETF 941
Query: 1658 KIAFLNGNLSEDVYMTQLEGFESIEP-NKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDF 1482
F NG++ E +YM Q E F S + N VCKL KSIYGLKQ +F + I + F
Sbjct: 942 SPRFSNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSYGF 1001
Query: 1481 IKNKDKLCVYKKVNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYI 1302
N CVY K +GSK IFL+LYVDDILL NDI +L K LSK+F MKD+G+A+++
Sbjct: 1002 EANLMDECVYHKFSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFV 1061
Query: 1301 LDIKIYRDRSKRMLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERD 1122
L I+I+RDRS+ +LGLSQ YIDK+L+R+ ++ SK G P+ G S CPK +E
Sbjct: 1062 LGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQ 1121
Query: 1121 RMDRIPYALAIGSIMHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKT- 945
M +IPYA A+GS+M+A +CTR D++Y + + R+ +NPG HW A K ++ +R K
Sbjct: 1122 EMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEY 1181
Query: 944 CSWYMEEMNLEFKVMTMSAFNLIKTCSSCM-QLKTCSGYVFTQNGGAVSWXXXXXXXXXX 768
Y LE + S F + C ++ SGY++ GGA+SW
Sbjct: 1182 MLTYRRLDQLELIGYSDSDF------AGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTS 1235
Query: 767 XXXXXEYIAASEAAKNTVWIKKFITELGIVPSIVDPI 657
E++A EA+ +W++ F+T L ++ I P+
Sbjct: 1236 STMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPL 1272
Score = 45.8 bits (107), Expect(2) = e-124
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Frame = -2
Query: 654 LYCDNNGAITQAKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLS 475
++CDN A+ + RS S+YI ++ +++E + I IE + T +ADPLTK L
Sbjct: 1274 IFCDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLP 1333
Query: 474 Q---HKHDGH---AKFDGIKI 430
H+H H F+ I+I
Sbjct: 1334 PKVFHEHTAHMGVVSFEDIQI 1354
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 444 bits (1142), Expect = e-121
Identities = 257/502 (51%), Positives = 319/502 (63%), Gaps = 4/502 (0%)
Frame = -3
Query: 2150 SLHLMKHRLRKWEPPVPKDTPALRKSSRVIHFPLRYDLLITSNVLLIEEDEPTTYA*SES 1971
SL +K EP P R+S R P+RY ++LL+ DEP TY +
Sbjct: 746 SLSFLKDEQNIVEPVDEASAP--RRSKRPCQMPIRY----AHDILLLNNDEPNTYKEAMM 799
Query: 1970 SVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIG 1791
DS++W AMKSE++SM +N+VW L+DP +GVK I CK +Y KK + ++
Sbjct: 800 DPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIHKARLV 859
Query: 1790 CEGL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMT 1611
+G + + RI LAI AY +Y+IWQMDVK AFLNG LSEDVYMT
Sbjct: 860 AKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMT 919
Query: 1610 QLEGFESIEPN---KVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVN 1440
Q EGF ++PN KVCKLQKSIYGLKQ S N+RFDE IK F F+KNK++ CVY KV+
Sbjct: 920 QPEGF--VDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVS 977
Query: 1439 GSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRML 1260
GS ++ LILYVDDILL+GNDIPML+SVK L +FSMKD+GEA YIL IKIYRDRS+R++
Sbjct: 978 GSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLI 1037
Query: 1259 GLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSI 1080
GLSQ YIDK+L RF+++ +K+G P+ HGI SK P ERDRM+ IPYA AIGSI
Sbjct: 1038 GLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSI 1097
Query: 1079 MHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKV 903
M+A++CTR DVSYALSVTSR+QA+PGE HW AVKNIL R K Y + L
Sbjct: 1098 MYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKDAFLIYGGDEELVVNG 1157
Query: 902 MTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAK 723
T ++F K ++ SG+VF NGGAVSW EYIAASEAAK
Sbjct: 1158 YTDASFQTDKD-----DYRSQSGFVFILNGGAVSWKSSKQETVADSTTKAEYIAASEAAK 1212
Query: 722 NTVWIKKFITELGIVPSIVDPI 657
VWI+ FI ELG+VPS P+
Sbjct: 1213 EGVWIRNFIAELGVVPSASSPM 1234
Score = 187 bits (475), Expect = 4e-44
Identities = 95/150 (63%), Positives = 113/150 (75%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YFI FT DYSRYG+I L+ KSE+ EKFKEF+ EV+ Q K I +LR D+G E+L
Sbjct: 602 GFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQ 661
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
EF ++LK+ I+ Q TPP TP NGVSER N TLLDMVR MMS++ LP FWGYAL TA
Sbjct: 662 EFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFWGYALETAA 721
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIK 2397
TLNRVPSKSVDKTPYE+W GK P+LS++K
Sbjct: 722 FTLNRVPSKSVDKTPYEIWTGKSPSLSFLK 751
Score = 111 bits (278), Expect = 3e-21
Identities = 78/187 (41%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIYS---KWWCS* 802
K L +TKD FL+YGG+E L V GY D SFQ+DKD Y ++ F + W S
Sbjct: 1135 KYLRRTKDAFLIYGGDEELVVNGYTDASFQTDKDD---YRSQSGFVFILNGGAVSWKSSK 1191
Query: 801 LEKFQRRNDC*FNYRSRIYSCFRSSKE----YSLDQEVHY*TWNSS*HC*SNNLYCDNNG 634
E ++ + ++KE + E+ SS +LYCDNNG
Sbjct: 1192 QETVADSTT-----KAEYIAASEAAKEGVWIRNFIAELGVVPSASS----PMDLYCDNNG 1242
Query: 633 AITQAKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGH 454
AI QAKEPRSH S++ILR+YHLIRE++ R +KI ++ T NVADPLTK L+Q KH+ H
Sbjct: 1243 AIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAH 1302
Query: 453 AKFDGIK 433
+ GI+
Sbjct: 1303 TRAIGIR 1309
>emb|CAN80145.1| hypothetical protein VITISV_015720 [Vitis vinifera]
Length = 712
Score = 436 bits (1121), Expect(2) = e-119
Identities = 266/678 (39%), Positives = 383/678 (56%), Gaps = 25/678 (3%)
Frame = -3
Query: 2615 PYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTACHTLNRVPSKSVDKTPYE 2436
P +P QNGV+ERRN TL++M RSMM R+ LP+ WG A+ T + LN VPSKSV KTP+E
Sbjct: 2 PGSPEQNGVAERRNRTLMEMKRSMMGRSNLPEYLWGEAIKTTTYILNHVPSKSVPKTPFE 61
Query: 2435 LWKGKRPNLSYIKIWGCDAYVKRVESD--KLEAKSDKCLFVGYPKESVGYYFYNSIE-MK 2265
LW ++P+L++ K+WGC A VK + K ++++ +C F+GYP S GY FY S +
Sbjct: 62 LWTNRKPSLNHFKVWGCPAEVKIYDLSLKKTDSRTTRCYFIGYPSHSKGYKFYCSTHGTR 121
Query: 2264 VIISRLTVFLE------------KTVGAM*ILK-RFKKPQIKLTN*IFH---WLSLHLMK 2133
++ S++ FLE + V M ++ R + L F + +
Sbjct: 122 IVESQVAKFLELDVADSIPSQSDERVEPMDVISLRLPVSDVNLDVGAFDSGIQQGVTAVN 181
Query: 2132 HRLRKWEPPVPKDTPA-LRKSSRVIHFPLRYDLLI---TSNVLLIEEDEPTTYA*SESSV 1965
+ + P V + P +R+S R L D + + EE +PTTY + S
Sbjct: 182 FPIVEINPIVDEIPPVEMRRSQRTRRPALSNDYYVYLGEGEYDIGEEVDPTTYCEALSGD 241
Query: 1964 DSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCE 1785
+ W AM+ EM SM +N VW L+D P+G KPI CK V+ K + ++ +
Sbjct: 242 KANEWLIAMRDEMQSMSDNDVWELVDLPKGYKPIGCKWVFKTKRDNKGNVERYXARLVAK 301
Query: 1784 GL*VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQL 1605
G + S R+ +A+VA+ + ++ QMDVK AFLNG+LSE+VYM+Q
Sbjct: 302 GYTQREGIDFTETFSPVSTKDSFRLVMALVAHFDLELHQMDVKTAFLNGDLSEEVYMSQP 361
Query: 1604 EGF-ESIEPNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKV 1428
EGF E+ + N VC+L++SIYGLKQ L+FD+ + F FI+NK CVY KVNGSK
Sbjct: 362 EGFKENGKENMVCRLKRSIYGLKQAXRQWYLKFDKIVTSFGFIENKFDQCVYMKVNGSKY 421
Query: 1427 IFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQ 1248
IF++LY+DDILL +D+ +L K LS NF MKD+GEA ++L I+IYRDRS+ +LGLSQ
Sbjct: 422 IFMVLYIDDILLASSDVNLLNDTKRILSANFDMKDLGEAYFVLGIEIYRDRSRNLLGLSQ 481
Query: 1247 DMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAI 1068
YI+++L+RF++ K G P+ G LS E CPK +E+D M IPYA AIGS+M+A
Sbjct: 482 RAYINRVLKRFNMXTCKAGDVPVVKGDKLSNEQCPKNDLEKDVMKTIPYASAIGSLMYAQ 541
Query: 1067 LCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKVMTMS 891
+CTR D+++ ++V R+ NPG HW+ K ++ +R K Y NLE S
Sbjct: 542 VCTRPDIAFIVNVLGRYLXNPGXDHWVXAKKVMRYLQRTKDFMLVYRRVDNLEVVGXXDS 601
Query: 890 AFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNTVW 711
F CS K+ SGY+F GGA+SW E++A A+ W
Sbjct: 602 BFG---GCSD--DRKSTSGYIFMLXGGAISWKSVKXSLIASSTMYAEFVACYGASXQAXW 656
Query: 710 IKKFITELGIVPSIVDPI 657
++ I++L +V SI PI
Sbjct: 657 LRNLISKLQVVDSIFXPI 674
Score = 23.5 bits (49), Expect(2) = e-119
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = -2
Query: 654 LYCDNNGAITQAKEPRSHH*SRYILRQYHLIREII 550
+YCDNN + +K + S+ + +Y +++++
Sbjct: 676 IYCDNNAXVFYSKNNKISXXSKXMEIKYLXVKDLV 710
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 400 bits (1029), Expect(2) = e-115
Identities = 269/765 (35%), Positives = 403/765 (52%), Gaps = 37/765 (4%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G Y + DYSR + ++ K +A + FKE+K VERQTE+ + LR D G E+
Sbjct: 717 GTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSK 776
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
F Y K I+ +T P+TP QNGV+ER N T++ R ++S LPK FW A++TAC
Sbjct: 777 IFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTAC 836
Query: 2486 HTLNRVPSKSVDK-TPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYP 2310
+ +NR PS ++DK TP E+W G N S ++++GC AY V++ KLE ++ KC+F+GYP
Sbjct: 837 YLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYA-HVDNGKLEPRAIKCIFLGYP 895
Query: 2309 KESVGYYFYNSIEMKVIISRLTVFLEKTV-----GAM*ILKRFKKPQIKLTN*IFHWLSL 2145
GY + KV+ISR VF E + ++ +K +++ + I +
Sbjct: 896 SGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAP 955
Query: 2144 HLMKHRLRKWEPPV-----------PKDTPALRKSSRVIHFPLRY--DLLITSNVLLIEE 2004
+ + EP + PK + A + R I P RY + I + L + E
Sbjct: 956 EKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAE 1015
Query: 2003 D-----EPTTYA*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVK 1839
+ EP+TY+ + S D RW AM EM S+ +N W L+ P+ KPI CK ++ +
Sbjct: 1016 EIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKR 1075
Query: 1838 K-GRHGW*CSYLQGKIGCEGL*----VKTRD*L*RNLLTSSFV*VNRIPLAIVAYHNYDI 1674
K G + + ++ +G + D + SS R L+IVA H+Y++
Sbjct: 1076 KEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSI----RTLLSIVAMHDYEL 1131
Query: 1673 WQMDVKIAFLNGNLSEDVYMTQLEGFESIEPNK---VCKLQKSIYGLKQVFWS*NLRFDE 1503
QMDVK AFL+G L ED+YM Q +GF + P K VC+L+KS+YGLKQ RFD
Sbjct: 1132 EQMDVKTAFLHGELEEDIYMEQPKGF--VVPGKENLVCRLKKSLYGLKQSPRQWYKRFDS 1189
Query: 1502 TIKMFDFIKNKDKLCVYKKVNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKD 1323
+ F ++ CVY KV I+L+LYVDD+L+ D + +K LS F MKD
Sbjct: 1190 FMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKD 1249
Query: 1322 MGEATYILDIKIYRDRSKRMLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCP 1143
+G A IL ++I R R L LSQ YI+K+LRRF++ ++K P+ LS ++CP
Sbjct: 1250 LGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCP 1309
Query: 1142 KIQIERDRMDRIPYALAIGSIMHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP 963
+ + + M R+PY+ A+GS+M+A++C+R D+S+ALSV SR+ ANPG++HW AV+ I
Sbjct: 1310 QSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFR- 1368
Query: 962 *ERLKTCSWYMEEMNLEFKVMTMSAFNLIKTCSSCM-----QLKTCSGYVFTQNGGAVSW 798
Y+ + S L+ S + ++ +GYVFT G AVSW
Sbjct: 1369 ---------YLRGTSSACLQFGRSRDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSW 1419
Query: 797 XXXXXXXXXXXXXXXEYIAASEAAKNTVWIKKFITELGIVPSIVD 663
EY+A SEA K +W++ T L V S ++
Sbjct: 1420 KASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCIN 1464
Score = 46.2 bits (108), Expect(2) = e-115
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = -2
Query: 657 NLYCDNNGAITQAKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTK 484
N++CD+ AI K+ H +++I +YH IR +I +KI ++ +DN AD +TK
Sbjct: 1464 NIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTK 1521
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 367 bits (941), Expect(2) = e-110
Identities = 195/349 (55%), Positives = 248/349 (71%), Gaps = 2/349 (0%)
Frame = -3
Query: 1712 IPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQLEGFESIEP-NKVCKLQKSIYGLKQ 1536
I LAI AY +Y+IWQM VK AFLNGNL EDVYMTQ +GF+ + K+CKL +SIYGLKQ
Sbjct: 761 IVLAIAAYFDYEIWQMYVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQ 820
Query: 1535 VFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKVIFLILYVDDILLLGNDIPMLKSVK 1356
S N+RFDE +K F++N+++ CVYKK++GS ++FLILYVDDILL+GNDI ML+SVK
Sbjct: 821 ASRSWNIRFDEVVKALGFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVK 880
Query: 1355 L*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQDMYIDKILRRFSIEESKRGLCPIG 1176
L +FSMKD+GEA YIL I+IYRDRSKR++GLSQ YIDK+L+RF++++SK+G P+
Sbjct: 881 TSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMS 940
Query: 1175 HGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAILCTRLDVSYALSVTSRFQANPGEK 996
HGI L K CP+ ER++M IPYA AIGSIM+A+LCTR DVSYALS TSR+Q++PGE
Sbjct: 941 HGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGES 1000
Query: 995 HWIAVKNILSP*ERLKTCSW-YMEEMNLEFKVMTMSAFNLIKTCSSCMQLKTCSGYVFTQ 819
HWIAVKNIL R K Y + L T ++F + K ++ SG+VF
Sbjct: 1001 HWIAVKNILKYLRRTKDMFLAYGGQEELVVNGYTDASFQIDKD-----DFRSQSGFVFCL 1055
Query: 818 NGGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNTVWIKKFITELGIVPS 672
NGGAVSW EYIAASEA VWIKKF+++LG++ S
Sbjct: 1056 NGGAVSWKSSKQDIVVDSTTEAEYIAASEA----VWIKKFVSQLGVMTS 1100
Score = 63.2 bits (152), Expect(2) = e-110
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = -1
Query: 1840 KRVDMDGNVHTYKARLVAKGYK*RQEIDFDETFSPVALFKLI 1715
K+ D+DGNVH YKARLVAKG++ Q +D+DETFSPVA+ K I
Sbjct: 718 KKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFI 759
Score = 265 bits (678), Expect = 1e-67
Identities = 138/232 (59%), Positives = 165/232 (71%), Gaps = 6/232 (2%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YF FT D+SRYG++ L+ KSE+ EKFKEF EV+ K I LR D+G EYL
Sbjct: 490 GFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSL 549
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
EF ++LKE I+ Q TPP TP NGVSE RN TLLDMVRSMMS+T L +FWGYAL T
Sbjct: 550 EFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALETTA 609
Query: 2486 HTLNRVPSKSVDKTPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYPK 2307
TLN VPSKSVDKTPYE+W GKRP+LS++KIWGC+ YVKR++SDKL KSDKC FVGYPK
Sbjct: 610 FTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPK 669
Query: 2306 ESVGYYFYNSIEMKVIISRLTVFLE------KTVGAM*ILKRFKKPQIKLTN 2169
E+ GYYFYN E KV ++R VFLE K +G+M RF++ K T+
Sbjct: 670 ETKGYYFYNQEEGKVFVARHGVFLEKEFISRKDIGSMLWKHRFREDPKKKTD 721
Score = 114 bits (286), Expect = 3e-22
Identities = 81/185 (43%), Positives = 102/185 (55%), Gaps = 6/185 (3%)
Frame = -2
Query: 969 KSLGKTKDMFLVYGGNE-LRVQGYDDVSFQSDKDMFFVYATKDMFWICIYS---KWWCS* 802
K L +TKDMFL YGG E L V GY D SFQ DKD F ++ F C+ W S
Sbjct: 1010 KYLRRTKDMFLAYGGQEELVVNGYTDASFQIDKDDF---RSQSGFVFCLNGGAVSWKSS- 1065
Query: 801 LEKFQRRNDC*FNYRSRIYSCFRSSKEY--SLDQEVHY*TWNSS*HC*SNNLYCDNNGAI 628
+ D + + S + ++ T SS S +LYCDN+GAI
Sbjct: 1066 ------KQDIVVDSTTEAEYIAASEAVWIKKFVSQLGVMTSASS----SMDLYCDNSGAI 1115
Query: 627 TQAKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLLSQHKHDGHAK 448
QAKEPRSH S++ILRQYHLIREI+ R +KI ++ T NVADPLTK L Q KH+ H +
Sbjct: 1116 AQAKEPRSHQKSKHILRQYHLIREIVGRGDVKICKIHTDLNVADPLTKPLPQPKHEAHTR 1175
Query: 447 FDGIK 433
GI+
Sbjct: 1176 AMGIR 1180
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 400 bits (1028), Expect = e-108
Identities = 275/769 (35%), Positives = 406/769 (52%), Gaps = 23/769 (2%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G YF+ F DYSR ++ I+ KS+ FK FK VE + K I R D G EY +
Sbjct: 489 GAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSE 548
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
EF D+ K+ I Q+T YTP QNGV+ER N TLL+ R+M+ L K+FW A+NTAC
Sbjct: 549 EFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTAC 608
Query: 2486 HTLNRVPSKSVD-KTPYELWKGKRPNLSYIKIWGCDAYV--KRVESDKLEAKSDKCLFVG 2316
+ +NR PS +++ KTP E+W GK + S + I+G Y E KL+ KS KC F+G
Sbjct: 609 YLVNRAPSTAIELKTPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLG 668
Query: 2315 YPKESVGYYFYNSIEMKVIISRLTVFLEKTV--GAM*ILKRFKKP---QIKLTN*IFHWL 2151
Y GY ++ KV+ISR +F+E + G + +KP QI++
Sbjct: 669 YADGVKGYRLWDPTAHKVVISRDVIFVEDRLQRGEVDDSTEKEKPETTQIQVEEEFEQDS 728
Query: 2150 SLHLMKHRLRKWEPPVPKDT--PALRKSSRVIHFPLRY-DLLITSNV---LLIEEDEPTT 1989
S H E P P+ + P R+S R P + D ++ NV LL E+ EP+T
Sbjct: 729 SEAEPAH-----EEPEPESSGAPTTRQSDREKRRPTWHSDYVMEGNVAYCLLTEDGEPST 783
Query: 1988 YA*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSY 1809
+ + +S D +W AM+ E+ ++++N W L+ P+G KPI K V+ K
Sbjct: 784 FQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVER 843
Query: 1808 LQGKIGCEGL*VKTRD*L*RNLLTSSFV*VN--RIPLAIVAYHNYDIWQMDVKIAFLNGN 1635
+ ++ +G ++ + N + S V + R+ LA+ A N + Q+DVK AFL+G+
Sbjct: 844 YRARLVVKGY--AQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGD 901
Query: 1634 LSEDVYMTQLEGFESIE-PNKVCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIK-NKDKL 1461
L E++YM Q EGFE E N VC+L KS+YGLKQ RFD I + + N D
Sbjct: 902 LEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPC 961
Query: 1460 CVYKKVNGSKVIFLILYVDDILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYR 1281
+K+ + L+LYVDD+L+ G + + +K L++ F MKD+G A IL ++I+R
Sbjct: 962 AYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHR 1021
Query: 1280 DRSKRMLGLSQDMYIDKILRRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPY 1101
DR R + LSQ Y+ KIL RFS+++ K P+ + +S M P + R M R+PY
Sbjct: 1022 DRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPY 1081
Query: 1100 ALAIGSIMHAILCTRLDVSYALSVTSRFQANPGEKHWIAVKNILSP*ERLKTCS-----W 936
A A+GS+M A++CTR D++ A+ V SR+ ANPG +HW VK IL +K S +
Sbjct: 1082 ASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRIL---RYIKGTSDVALCY 1138
Query: 935 YMEEMNLEFKVMTMSAFNLIKTCSSCMQLKTCSGYVFTQNGGAVSWXXXXXXXXXXXXXX 756
+ + V + A +L K+ K+ +GYVF GGAVSW
Sbjct: 1139 GGSDFIINGYVDSDYAGDLDKS-------KSTTGYVFKVAGGAVSWVSKLQAVVATSTTE 1191
Query: 755 XEYIAASEAAKNTVWIKKFITELGIVPSIVDPITCIVITMEPSHKRRNP 609
EY+AA++A+K +W+K + ELG V + + H RNP
Sbjct: 1192 AEYVAATQASKEAIWLKMLLEELGHKQEFV---SLFCDSQSALHLARNP 1237
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 395 bits (1015), Expect = e-106
Identities = 273/771 (35%), Positives = 397/771 (51%), Gaps = 43/771 (5%)
Frame = -3
Query: 2846 GVSYFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKD 2667
G Y + DYSR + ++ K +A + FKE+K VERQTE+ + LR D G E+
Sbjct: 482 GARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSK 541
Query: 2666 EFLDYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTAC 2487
F Y K I+ +T P+TP QN V+ER N T++ R M+S LPK FW A++TAC
Sbjct: 542 IFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTAC 601
Query: 2486 HTLNRVPSKSVDK-TPYELWKGKRPNLSYIKIWGCDAYVKRVESDKLEAKSDKCLFVGYP 2310
+ +NR P ++DK TP E+W G N S ++++GC AY V++ KLE ++ KC+F+GY
Sbjct: 602 YLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYA-HVDNGKLEPRAIKCIFLGYA 660
Query: 2309 KESVGYYFYNSIEMKVIISRLTVFLEKTVGAM*ILKRFKKP--------QIKLTN*IFHW 2154
GY + KV+ISR VF E + KP Q K + + H
Sbjct: 661 SGVKGYKLWCPETKKVVISRNVVFHESVI-------LHDKPSTNVPVESQEKASVQVEHL 713
Query: 2153 LSLHLMKHRLRKWEPPVPKDTPALRKS-SRVIHF-----------------PLRY--DLL 2034
+S H K + + +D P + S S ++H P RY +
Sbjct: 714 IS---SGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAK 770
Query: 2033 ITSNVLLIEED-----EPTTYA*SESSVDSKRWQEAMKSEMNSMYENKVWTLLDPPEGVK 1869
I + L + E EP+TY+ + S D RW AM EM S+ +N W L+ P+ K
Sbjct: 771 IVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKK 830
Query: 1868 PISCKLVYVKK-GRHGW*CSYLQGKIGCEGL*----VKTRD*L*RNLLTSSFV*VNRIPL 1704
PI CK ++ +K G + + ++ +G + D + SS R L
Sbjct: 831 PIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSI----RTLL 886
Query: 1703 AIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQLEGFESIEPNK---VCKLQKSIYGLKQV 1533
IVA H+Y++ QM+VK AFL+G L ED+YM Q EGF + P K VC+L+KS+YGLKQ
Sbjct: 887 GIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGF--VVPGKENLVCRLKKSLYGLKQS 944
Query: 1532 FWS*NLRFDETIKMFDF-IKNKDKLCVYKKVNGSKVIFLILYVDDILLLGNDIPMLKSVK 1356
RFD + F I N D CVY KV VI+L+LYVDD+L+ D ++ +K
Sbjct: 945 PRQWYKRFDSFMLSQKFRISNYDS-CVYLKVVDGSVIYLLLYVDDMLIAAKDKSEIEKLK 1003
Query: 1355 L*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQDMYIDKILRRFSIEESKRGLCPIG 1176
LS F MKD+G A IL ++I R+R L LSQ YI+K+LRRF++ ++K P+
Sbjct: 1004 AQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLA 1063
Query: 1175 HGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAILCTRLDVSYALSVTSRFQANPGEK 996
LS ++CP + + M R+PY+ A+GS+M+A++C R D+S+ALSV +R+ ANPG++
Sbjct: 1064 AHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKE 1123
Query: 995 HWIAVKNILSP*ERLKTCSWYMEEMNLEFKVMTMSAFNLIKTCSSCMQLKTCSGYVFTQN 816
HW AV+ I + E S F + ++ +GYVFT
Sbjct: 1124 HWKAVQWIFRYLRGTSSACLQFERSRDGLVGYVDSDF-----AGDLDRRRSITGYVFTIG 1178
Query: 815 GGAVSWXXXXXXXXXXXXXXXEYIAASEAAKNTVWIKKFITELGIVPSIVD 663
G AVSW EY+A EA K +W++ TEL V S ++
Sbjct: 1179 GCAVSWKASLQATVALSTTEAEYMAIFEACKEAIWLRGLYTELCGVTSCIN 1229
>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 649
Score = 395 bits (1014), Expect = e-106
Identities = 223/443 (50%), Positives = 288/443 (65%), Gaps = 7/443 (1%)
Frame = -3
Query: 2114 EPPVPKDTPALRKSSRVIHFPLRYDLLITS--NVLLIEEDEPTTYA*SESSVDSKRWQEA 1941
EP V + PA R+S R+ P RY LL T ++LL++ DEPTTY + DS++W EA
Sbjct: 159 EPVV--EAPASRRSERIRRTPARYALLTTGQRDILLLDNDEPTTYEEAMVGPDSEKWLEA 216
Query: 1940 MKSEMNSMYENKVWTLLDPPEGVKPISCKLVYVKKGRHGW*CSYLQGKIGCEGL*VKTRD 1761
MKSE+ M+ N+VW L+DPP+GVK I CK V+ KK + + G +
Sbjct: 217 MKSEIEFMHVNQVWNLVDPPDGVKAIECKWVFKKK-------TDVDGNV----------- 258
Query: 1760 *L*RNLLTSSFV*VNRIPLAIVAYHNYDIWQMDVKIAFLNGNLSEDVYMTQLEGFESIEP 1581
++ + V I LAI Y NY IWQMDVK AFLNGNL EDVYMTQ +GF +
Sbjct: 259 ----HIHKARLV----IVLAIATYFNYKIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQS 310
Query: 1580 NK-VCKLQKSIYGLKQVFWS*NLRFDETIKMFDFIKNKDKLCVYKKVNGSKVIFLILYVD 1404
K +CKLQKSIYGLKQ S + FDE +K+ F+KN+++ CVYKK++GS ++FLILYVD
Sbjct: 311 AKRICKLQKSIYGLKQASRSWKICFDEVVKVLGFVKNEEEPCVYKKISGSTLVFLILYVD 370
Query: 1403 DILLLGNDIPMLKSVKL*LSKNFSMKDMGEATYILDIKIYRDRSKRMLGLSQDMYIDKIL 1224
DILL+GNDIPML+SVK L +FSMKD+GEA YIL I+IYRDRSKR++GLSQ YIDK+L
Sbjct: 371 DILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVL 430
Query: 1223 RRFSIEESKRGLCPIGHGIYLSKEMCPKIQIERDRMDRIPYALAIGSIMHAILCTRLDVS 1044
+RF++++SK+G P+ HGI L K CP+ ER++M IPYA AIGSI++ +LCTR DVS
Sbjct: 431 KRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIVYGMLCTRPDVS 490
Query: 1043 YALSVTSRFQA---NPGEKHWIAVKNILSP*ERLKTCSW-YMEEMNLEFKVMTMSAFNLI 876
YALS TSR+Q +PGE HWI VKNIL R K Y + + T ++F
Sbjct: 491 YALSATSRYQGYVPSPGESHWIVVKNILKYLRRTKDMFLVYGGQEEIVVNGYTDASFQTD 550
Query: 875 KTCSSCMQLKTCSGYVFTQNGGA 807
K + G+VF NGGA
Sbjct: 551 KD-----DFRLQFGFVFCLNGGA 568
Score = 159 bits (401), Expect = 2e-35
Identities = 84/152 (55%), Positives = 99/152 (65%)
Frame = -3
Query: 2837 YFIIFTYDYSRYGFICLIEFKSEALEKFKEFKQEVERQTEKNILTLRFDQGEEYLKDEFL 2658
YFI FT D+SRYG++ L+ KSE+ EKFKEF+ E
Sbjct: 11 YFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNE-------------------------- 44
Query: 2657 DYLKENVILSQWTPPYTP*QNGVSERRNCTLLDMVRSMMSRTVLPKTFWGYALNTACHTL 2478
E I+ Q TP TP NGVSERRN TLL MVRSMMS+T +P +FWGYAL TA TL
Sbjct: 45 ----ECGIVPQLTPTGTPQWNGVSERRNRTLLYMVRSMMSQTDMPLSFWGYALETAAFTL 100
Query: 2477 NRVPSKSVDKTPYELWKGKRPNLSYIKIWGCD 2382
NRVPSKSVDKTPYE+W GKRP+LS++KIWGC+
Sbjct: 101 NRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCE 132
Score = 87.0 bits (214), Expect = 8e-14
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = -2
Query: 657 NLYCDNNGAITQAKEPRSHH*SRYILRQYHLIREIILRNYIKIERVLTYDNVADPLTKLL 478
+LYCDN GAI QAKEPRSH S++IL +YHLIREI+ R +KI ++ T NVADPL K L
Sbjct: 571 DLYCDNIGAIAQAKEPRSHQKSKHILLRYHLIREIVGRGDVKICKINTDLNVADPLRKPL 630
Query: 477 SQHKHDGHAKFDGIK 433
Q KH+ H + GI+
Sbjct: 631 PQPKHEAHTRAMGIR 645