BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00021401
         (2108 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]   177   1e-62
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]   157   3e-55
ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868...   147   9e-52
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]                    140   1e-49
gb|AAC02664.1| polyprotein [Arabidopsis thaliana]                     138   2e-47
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   128   4e-47
gb|AAC02666.1| polyprotein [Arabidopsis thaliana]                     135   2e-46
gb|AAC02669.1| polyprotein [Arabidopsis thaliana]                     135   3e-46
ref|XP_010541762.1| PREDICTED: retrovirus-related Pol polyprotei...   123   3e-45
ref|XP_010686475.1| PREDICTED: uncharacterized protein LOC104900...   130   2e-44
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   130   2e-43
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   130   3e-43
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   126   4e-43
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   132   2e-42
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   129   3e-42
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]   115   3e-42
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   127   3e-42
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   119   7e-42
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   120   1e-41
ref|XP_008365969.1| PREDICTED: uncharacterized protein LOC103429...   113   1e-41

>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
          Length = 1427

 Score =  177 bits (448), Expect(2) = 1e-62
 Identities = 124/340 (36%), Positives = 175/340 (51%), Gaps = 36/340 (10%)
 Frame = -1

Query: 1220 MSLNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHR 1041
            M L  F LT+GF NS  ++SL IY   +  IYFLV+VDDLLVT + S +I  F+ AL+HR
Sbjct: 1055 MELRTFLLTFGFINSKXDTSLFIYQXRSATIYFLVYVDDLLVTGNCSQSIRRFIDALAHR 1114

Query: 1040 FSIQVFRFTILF------YPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLL 879
            FS++       F               SQH+Y+ D+L        +      +ST  L L
Sbjct: 1115 FSLKDLGPLSYFLGVEGAISTSDGMFLSQHQYVRDLLAKFNLEGIKDSSTPMSSTGHLTL 1174

Query: 878  HDGSPPTDAT---------L*CQVTHSIISFVVNKLS*L----CVDLLTVMKRILRNLKH 738
            +DGSPP +AT            Q+T   I+F VNKL+           T  KR+LR LKH
Sbjct: 1175 NDGSPPXNATQFRSLIGGLQYLQLTRLDIAFAVNKLAQFMHAPTQTHWTAAKRLLRYLKH 1234

Query: 737  T-HHGLFLSKQRDLR------------LTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS* 597
            T H GL   + + L             L A++D DWA + D   ST+ +++FLGG PIS 
Sbjct: 1235 TIHLGLTFRRXQPLHLQAYSDVTPPLDLRAYSDADWAGDPDSYKSTTAFVLFLGGHPISW 1294

Query: 596  CSKRQWLAPLPKLNTRHLPRVLLKLFG*VI----S*RKYTFLFLIAPPIFYDNIDATYLC 429
            CSK+Q    + + +T    R +      V        +       +P I+ DN+ ATYLC
Sbjct: 1295 CSKKQ--KTVARSSTEAEYRAVASTAAEVTWVSHLLSELGITLQQSPTIYCDNLSATYLC 1352

Query: 428  VNPIFHLRIKHIAINYHFIRNHGSNRSFVVSYISSNDQLA 309
            VNP+FH R+KH+A++YHF+R    + S  VS++++  QLA
Sbjct: 1353 VNPLFHSRMKHVALDYHFVREKVXDGSLKVSHVNTQSQLA 1392



 Score = 93.6 bits (231), Expect(2) = 1e-62
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK TTI ++ +  L     + QLDVNN FLH T+TE+VYM QP  ++    PTH+C+
Sbjct: 979  SPVVKPTTIRVVLSIALSNXWXISQLDVNNXFLHGTLTEDVYMAQPPGYVDQANPTHVCR 1038

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L+KALYGLK AP  WY EL+ FL
Sbjct: 1039 LQKALYGLKQAPRAWYMELRTFL 1061


>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score =  157 bits (396), Expect(2) = 3e-55
 Identities = 112/320 (35%), Positives = 163/320 (50%), Gaps = 21/320 (6%)
 Frame = -1

Query: 1205 FFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQ- 1029
            F L +GF NS +++SL I+ N +  +Y LV+VDD+++T +N  A  TF+Q LS RFS++ 
Sbjct: 121  FLLQFGFINSIADTSLFIFNNHDTILYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKD 180

Query: 1028 ----VFRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGSPP 861
                 +   +           SQ KYI+D+L        +       ++  L L  G+P 
Sbjct: 181  LGPLTYFLGVEVTSHTNGLFLSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSGTPL 240

Query: 860  TDATL*CQVTHSI---------ISFVVNKLS*L----CVDLLTVMKRILRNLKHT-HHGL 723
            +D T    V  S+         I++ VNKLS        D    +KR+LR L  T  H +
Sbjct: 241  SDPTEYRTVVGSLQYLSLTRPDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHDI 300

Query: 722  FLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNT--R 549
             L +   L L AF+D+DWA N DD +STS Y+I+LG  PIS  SK+Q            R
Sbjct: 301  TLRRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYR 360

Query: 548  HLPRVLLKLFG*VIS*RKYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKHIAINYHFIR 369
             +     ++        +        P I+ DN+ AT LC NP+FH R+KH+A++YHFIR
Sbjct: 361  SVASTAAEIRWICSLLTELGVTLPQQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIR 420

Query: 368  NHGSNRSFVVSYISSNDQLA 309
                N    VS+IS++DQLA
Sbjct: 421  EQVQNGLLRVSHISASDQLA 440



 Score = 88.6 bits (218), Expect(2) = 3e-55
 Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K TT+ ++ +  +     ++QLDVNNAFL  T+TE+V+M+QP  FI   +P H+C+
Sbjct: 40   SPVIKPTTVRLVLSLAVSQGWSLRQLDVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCK 99

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWF 1186
            L+KA+YGLK AP  WY+EL  FL    F
Sbjct: 100  LRKAIYGLKQAPRAWYHELCQFLLQFGF 127


>ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868780 [Brassica rapa]
          Length = 2690

 Score =  147 bits (370), Expect(2) = 9e-52
 Identities = 115/346 (33%), Positives = 173/346 (50%), Gaps = 30/346 (8%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L    L  GF NS +++SL  Y +    +Y LV+VDD++VT S+   +  F+  L+ RFS
Sbjct: 1761 LKRTLLAAGFRNSVADTSLFTYCHGPHLVYILVYVDDIVVTGSSIPLVNQFIAMLAQRFS 1820

Query: 1034 IQVFRFTILFYPXXXXXXXS-----QHKYISDIL--TNMTGGWCQVLYYSKTST*SLLLH 876
            I+       F               Q+KYI D+L  TNM     + +     +   L L 
Sbjct: 1821 IKDLGHISYFLGIEATRTSKGLHLMQNKYIQDLLAKTNMLNA--KTVSTPLATHPKLTLR 1878

Query: 875  DGSPPTDATL*CQVTHSI---------ISFVVNKLS*LC----VDLLTVMKRILRNLKHT 735
             G+P  + T   QV  S+         I++ VNKLS        D     KR+LR L  T
Sbjct: 1879 SGTPLLNPTDYRQVVGSLQYLAFTRPDIAYAVNKLSQFMHQPTEDHWQAAKRVLRYLAGT 1938

Query: 734  H-HGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKL 558
               G+++ +     L A++D DWA + DD  ST+ Y+I++G  PIS  +K+Q  + + + 
Sbjct: 1939 SKQGIWIRRDSPPTLHAYSDADWAGDPDDYISTNAYIIYIGTTPISWSAKKQ--SGVARS 1996

Query: 557  NT----RHLPRVLLKLFG*VIS*RKYTFLFLIAPPIFY-DNIDATYLCVNPIFHLRIKHI 393
            +T    R +     +L   V S  K   + + + P+ Y DNI ATYLC NP+FH R+KH+
Sbjct: 1997 STEAEYRSVANTAAELMW-VCSLMKELHIPVTSSPVIYCDNIGATYLCANPVFHTRMKHV 2055

Query: 392  AINYHFIRNHGSNRSFVVSYISSNDQLA----SPYHLLSLTECCPR 267
            A++YHFIR H  + +  VS++S+ DQLA     P   L   E C +
Sbjct: 2056 ALDYHFIRAHVQSGALRVSHVSTKDQLADALTKPLSRLRFQELCSK 2101



 Score = 87.0 bits (214), Expect(2) = 9e-52
 Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K TT+ ++    +  D  ++Q+DVNNAFL  T+ +EVY++QP  F+    P H+C+
Sbjct: 1683 SPVIKSTTVRLVLEHAVRKDWTIRQIDVNNAFLQGTLQDEVYVSQPPGFVDKDRPHHVCR 1742

Query: 1263 LKKALYGLKHAP--WYNELK 1210
            L+KALYGLK AP  WY ELK
Sbjct: 1743 LRKALYGLKQAPRAWYEELK 1762


>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
          Length = 1429

 Score =  140 bits (354), Expect(2) = 1e-49
 Identities = 110/343 (32%), Positives = 166/343 (48%), Gaps = 27/343 (7%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L  F L  GF NS +++SL IY   N  +Y LV+VDD+++   N+  +  F  +L+ RFS
Sbjct: 1081 LRRFLLQAGFVNSLADASLFIYNRHNTFMYVLVYVDDIIIAGENA-LVQAFNASLASRFS 1139

Query: 1034 IQ-----VFRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDG 870
            ++      +   I            Q KYI+D+L        + +    + T  L L  G
Sbjct: 1140 LKDLGPLSYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSG 1199

Query: 869  SPPTDATL*CQVTHSI---------ISFVVNKLS*LCV----DLLTVMKRILRNLKHTH- 732
            +   DAT    V  S+         I+F VN+LS        +     KRILR L  T  
Sbjct: 1200 TALDDATEYRTVLGSLQYLAFTRPDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAGTKS 1259

Query: 731  HGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNT 552
            HG+FL     L + AF+D DW  + D   ST+ Y+++ GG+P+S  SK+Q      +   
Sbjct: 1260 HGIFLRSDTPLTIHAFSDADWGCDLDAYLSTNAYIVYFGGSPVSWSSKKQ------RSVA 1313

Query: 551  RHLPRVLLKLFG*VIS*RKYTFLFLI--------APPIFYDNIDATYLCVNPIFHLRIKH 396
            R       +      S  ++    L+         P I+ DNI ATYLC NP+FH R+KH
Sbjct: 1314 RSSTEAEYRAVANTASELRWLCSLLLEMGISQTTVPVIYCDNIGATYLCANPVFHSRMKH 1373

Query: 395  IAINYHFIRNHGSNRSFVVSYISSNDQLASPYHLLSLTECCPR 267
            +A++YHF+R +  + +  VS++S+ DQLA      +LT+  PR
Sbjct: 1374 VALDYHFVRGYIQSGALRVSHVSTKDQLAD-----ALTKPLPR 1411



 Score = 85.9 bits (211), Expect(2) = 1e-49
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K TTI  +    +  +  + Q+D+NNAFL  T+ EEVY++QP  FI    P+H+C+
Sbjct: 1003 SPVIKSTTIRTVLEVAVKRNWSIHQVDINNAFLQGTLNEEVYVSQPPGFIDRDRPSHVCR 1062

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L KALYGLK AP  WY EL+ FL
Sbjct: 1063 LNKALYGLKQAPRAWYQELRRFL 1085


>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score =  138 bits (348), Expect(2) = 2e-47
 Identities = 113/341 (33%), Positives = 172/341 (50%), Gaps = 25/341 (7%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L ++ LT GF NS +++SL    +    +Y LV+VDD+L+T S++N I  F+  L+ RFS
Sbjct: 1102 LRSYLLTQGFVNSVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFS 1161

Query: 1034 IQ-----VFRFTILFYPXXXXXXXSQHKYISDIL--TNMTGGWCQVLYYSKTST*SLLLH 876
            ++      +   I            Q +Y+ D+L  TNM      +   S T    L L 
Sbjct: 1162 LKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTP--KLSLT 1219

Query: 875  DGSPPTDATL*CQVTHSI---------ISFVVNKLS*LC---VDL-LTVMKRILRNLKHT 735
             G P    +    V  S+         I++ VN+LS       DL     KRILR L  T
Sbjct: 1220 SGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGT 1279

Query: 734  -HHGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKL 558
              HG+F+     L L A++D DWA + D+ +ST+ Y+++LG  PIS  SK+Q    + + 
Sbjct: 1280 PSHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQ--KGVARS 1337

Query: 557  NTRHLPRVLLKL---FG*VIS*RKYTFLFLIAPPIFY-DNIDATYLCVNPIFHLRIKHIA 390
            +T    R +         V S      + L +PP+ Y DN+ ATYL  NP+FH R+KHIA
Sbjct: 1338 STEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFHSRMKHIA 1397

Query: 389  INYHFIRNHGSNRSFVVSYISSNDQLASPYHLLSLTECCPR 267
            +++HF+R      +  V+++S+ DQLA      +LT+  PR
Sbjct: 1398 LDFHFVRESVQAGALRVTHVSTKDQLAD-----ALTKPLPR 1433



 Score = 81.3 bits (199), Expect(2) = 2e-47
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K TT+  +    +     ++Q+DVNNAFL  T+++EVY+TQP  F+      H+C+
Sbjct: 1024 SPVIKSTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCR 1083

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L KALYGLK AP  WY EL+ +L
Sbjct: 1084 LYKALYGLKQAPRAWYQELRSYL 1106


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  128 bits (321), Expect(2) = 4e-47
 Identities = 103/331 (31%), Positives = 161/331 (48%), Gaps = 29/331 (8%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L+   L +GF  S ++SS+ I+ +++  +  L++VDD+LVT S+S  +++F+  L+  F+
Sbjct: 872  LSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSFA 931

Query: 1034 IQVFRFTILFYPXXXXXXXS-----QHKYISDILTNMTGGWCQVLYYSKTST*SLLLH-- 876
            ++   +   F         +     QHKY  D+L+         +  SK +T   LL   
Sbjct: 932  LRDLGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTA------MLDSKPATTPGLLGQT 985

Query: 875  ----DGSPPTDATL*---------CQVTHSIISFVVNKLS*LCVDLLTV----MKRILRN 747
                DG P +DATL            +T   ISF VNK         T     +KRILR 
Sbjct: 986  LSHLDGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRY 1045

Query: 746  LKHT-HHGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAP 570
            LK T  +G+ + +   L +  +TD DWA   DDR ST  Y IFLG   +S  S +Q +  
Sbjct: 1046 LKGTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVS 1105

Query: 569  LPKLNTRHLPRVLLKLFG*VIS*R---KYTFLFLIAPPIFY-DNIDATYLCVNPIFHLRI 402
                 + +  R L      +I  +   +   L   +PP+ + DN  A +L  NP+FH R 
Sbjct: 1106 RSSAESEY--RALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHART 1163

Query: 401  KHIAINYHFIRNHGSNRSFVVSYISSNDQLA 309
            KHI ++ HFIR+H   +  V+ Y+ S +Q+A
Sbjct: 1164 KHIEMDLHFIRDHVLRKQLVIQYLPSAEQVA 1194



 Score = 90.5 bits (223), Expect(2) = 4e-47
 Identities = 46/83 (55%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK +TI II    L  +  V QLDV NAFLH  + E V+M QP  FI +QYP+H+C+
Sbjct: 794  SPVVKASTIRIILAVALSFNWSVHQLDVQNAFLHGDLEEHVFMQQPPGFINSQYPSHVCK 853

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L KALYGLK AP  WYN+L   L
Sbjct: 854  LNKALYGLKQAPRAWYNKLSTSL 876


>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score =  135 bits (339), Expect(2) = 2e-46
 Identities = 112/341 (32%), Positives = 171/341 (50%), Gaps = 25/341 (7%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L ++ LT GF NS +++SL    +    +Y LV+VDD+L+T S++N I  F+  L+ RFS
Sbjct: 1102 LRSYLLTQGFVNSVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFS 1161

Query: 1034 IQ-----VFRFTILFYPXXXXXXXSQHKYISDIL--TNMTGGWCQVLYYSKTST*SLLLH 876
            ++      +   I            Q +Y+ D+L  TNM      +   S T    L L 
Sbjct: 1162 LKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTP--KLSLT 1219

Query: 875  DGSPPTDATL*CQVTHSI---------ISFVVNKLS*LC---VDL-LTVMKRILRNLKHT 735
             G P    +    V  S+         I++ VN+LS       DL     KRILR L  T
Sbjct: 1220 SGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGT 1279

Query: 734  -HHGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKL 558
              HG+F+     L L A++D DWA + D+ +ST+ Y+++LG  PIS  SK+Q    + + 
Sbjct: 1280 PSHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQ--KGVARS 1337

Query: 557  NTRHLPRVLLKL---FG*VIS*RKYTFLFLIAPPIFY-DNIDATYLCVNPIFHLRIKHIA 390
            +T    R +         V S      + L +PP+ Y DN+ ATYL  NP+F  R+KHIA
Sbjct: 1338 STEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFDSRMKHIA 1397

Query: 389  INYHFIRNHGSNRSFVVSYISSNDQLASPYHLLSLTECCPR 267
            +++HF+R      +  V+++S+ DQLA      +LT+  PR
Sbjct: 1398 LDFHFVRESVQAGALRVTHVSTKDQLAD-----ALTKPLPR 1433



 Score = 81.3 bits (199), Expect(2) = 2e-46
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K TT+  +    +     ++Q+DVNNAFL  T+++EVY+TQP  F+      H+C+
Sbjct: 1024 SPVIKSTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCR 1083

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L KALYGLK AP  WY EL+ +L
Sbjct: 1084 LYKALYGLKQAPRAWYQELRSYL 1106


>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score =  135 bits (339), Expect(2) = 3e-46
 Identities = 112/341 (32%), Positives = 171/341 (50%), Gaps = 25/341 (7%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L ++ LT GF NS +++SL    +    +Y LV+VDD+L+T S++N I  F+  L+ RFS
Sbjct: 1102 LRSYLLTQGFVNSVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFS 1161

Query: 1034 IQ-----VFRFTILFYPXXXXXXXSQHKYISDIL--TNMTGGWCQVLYYSKTST*SLLLH 876
            ++      +   I            Q +Y+ D+L  TNM      +   S T    L L 
Sbjct: 1162 LKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTP--KLSLT 1219

Query: 875  DGSPPTDATL*CQVTHSI---------ISFVVNKLS*LC---VDL-LTVMKRILRNLKHT 735
             G P    +    V  S+         I++ VN+LS       DL     KRILR L  T
Sbjct: 1220 SGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGT 1279

Query: 734  -HHGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKL 558
              HG+F+     L L A++D DWA + D+ +ST+ Y+++LG  PIS  SK+Q    + + 
Sbjct: 1280 PSHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQ--KGVARS 1337

Query: 557  NTRHLPRVLLKL---FG*VIS*RKYTFLFLIAPPIFY-DNIDATYLCVNPIFHLRIKHIA 390
            +T    R +         V S      + L +PP+ Y DN+ ATYL  NP+F  R+KHIA
Sbjct: 1338 STEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFDSRMKHIA 1397

Query: 389  INYHFIRNHGSNRSFVVSYISSNDQLASPYHLLSLTECCPR 267
            +++HF+R      +  V+++S+ DQLA      +LT+  PR
Sbjct: 1398 LDFHFVRESVQAGALRVTHVSTKDQLAD-----ALTKPLPR 1433



 Score = 80.5 bits (197), Expect(2) = 3e-46
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K TT+  +    +     ++Q+DVNNAFL  T+++EVY+TQP  F+      H+C+
Sbjct: 1024 SPVIKLTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCR 1083

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L KALYGLK AP  WY EL+ +L
Sbjct: 1084 LYKALYGLKQAPRAWYQELRSYL 1106


>ref|XP_010541762.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Tarenaya hassleriana]
          Length = 813

 Score =  123 bits (309), Expect(2) = 3e-45
 Identities = 111/344 (32%), Positives = 153/344 (44%), Gaps = 30/344 (8%)
 Frame = -1

Query: 1205 FFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQ- 1029
            F +  GF NS S+SSL I+  ++  IY L                  F+  L+ RFS++ 
Sbjct: 148  FLVQSGFINSLSDSSLFIHKQNSDLIYLL------------------FISLLAGRFSLKD 189

Query: 1028 ----VFRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGSPP 861
                 F   +           SQ +YI DILT       + +    +ST SL L+ GS  
Sbjct: 190  LGNLSFFLGVEVKRSSAGLALSQRRYIDDILTRHKMSDAKPMPTPLSSTSSLSLNSGSVL 249

Query: 860  TDATL*CQVTHSI---------ISFVVNKLS*LC----VDLLTVMKRILRNLKHTHH-GL 723
             D T   QV  S+         ++F VNKLS        D    +KRILR +  T   GL
Sbjct: 250  EDPTEFRQVLGSLQYLLLTRPDLAFAVNKLSQYMHRPTTDHWQAVKRILRYVGGTRPLGL 309

Query: 722  FLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHL 543
            F +      L A++D DW  + DD SST  ++++L   PIS  SK+Q  A        + 
Sbjct: 310  FFAASNTASLHAYSDADWGGDRDDFSSTGAHIVYLSRHPISWSSKKQRFAAKSSTEAEYK 369

Query: 542  P-----------RVLLKLFG*VIS*RKYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKH 396
                          LL   G  I+           P I+ DN+ ATYL  NP+FH R+KH
Sbjct: 370  SVSTTASEVQWVSALLSELGVSIT---------ATPTIYCDNVGATYLSANPVFHSRMKH 420

Query: 395  IAINYHFIRNHGSNRSFVVSYISSNDQLASPYHLLSLTECCPRS 264
            +AI+YHFIR    +    V +ISS DQLA      +LT+  PR+
Sbjct: 421  VAIDYHFIRGLVQSSKLRVIHISSTDQLAD-----ALTKALPRT 459



 Score = 89.0 bits (219), Expect(2) = 3e-45
 Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVKH T+ +I +  +  +  ++QLDVNNAFL  ++ E+VY+ QP  FI    P+HIC+
Sbjct: 67   SPVVKHATVRVILSIAVSRNWSLRQLDVNNAFLQGSLHEDVYVAQPAGFIDKDRPSHICK 126

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            L KA+YGLK AP  WYNEL  FL
Sbjct: 127  LHKAIYGLKQAPRAWYNELCQFL 149


>ref|XP_010686475.1| PREDICTED: uncharacterized protein LOC104900682 [Beta vulgaris subsp.
            vulgaris]
          Length = 4583

 Score =  130 bits (328), Expect(2) = 2e-44
 Identities = 105/323 (32%), Positives = 155/323 (47%), Gaps = 21/323 (6%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L ++ L  GF N  S++SL  +      +Y LV+VDD++VT +    +++F+ AL  RFS
Sbjct: 1018 LKSYLLQAGFVNCLSDTSLF-FTKGPQPLYVLVYVDDIIVTGACPTLVSSFIAALGDRFS 1076

Query: 1034 IQVFRFTILFY-----PXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDG 870
            ++       F      P       SQ KYI D+LT       + +        SL LHDG
Sbjct: 1077 LKDLGSLSYFLGVEVQPTTRGIFLSQRKYIMDLLTRAHMSDAKPVTTPMDPNSSLSLHDG 1136

Query: 869  SPPTDATL*CQVTHSI---------ISFVVNKLS*LC----VDLLTVMKRILRNLKHT-H 732
             P  + T    +  S+         ++F VNKLS             +KR+LR L  T  
Sbjct: 1137 PPHDNPTEYRTLVGSLQYLGLTRPDVAFSVNKLSQFMHCPTAPHWQALKRLLRYLCGTLT 1196

Query: 731  HGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNT 552
            +GL +S      L AF+D+DWA + DD  ST  Y+++LG  PIS  SK+Q          
Sbjct: 1197 YGLNISHNSPHTLHAFSDSDWAGDKDDFISTGAYIVYLGSNPISWSSKKQRSVARSSTEA 1256

Query: 551  --RHLPRVLLKLFG*VIS*RKYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKHIAINYH 378
              R L +   +L       ++        P IF DNI AT L  NP+FH R+KH+ I+++
Sbjct: 1257 EYRSLAQTAAELTWLTNVLQELGLSRSSPPTIFCDNIGATQLAANPVFHSRMKHLGIDFY 1316

Query: 377  FIRNHGSNRSFVVSYISSNDQLA 309
            FIR    + S  V+ + ++DQLA
Sbjct: 1317 FIREKVQSGSLRVTRVVNDDQLA 1339



 Score = 78.6 bits (192), Expect(2) = 2e-44
 Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
 Frame = -3

Query: 1464 TDGSIYANPVVKHTTICIIHTFVLHLDL-PVKQLDVNNAFLHETITEEVYMTQPLSFIGA 1288
            T+G   A  +V   +   + T++   +  P++QLD+N+AFL  T+ E V+M+QP  F+  
Sbjct: 932  TEGVTSAVIIVDDKSYLNVTTYIATTNRWPLRQLDINDAFLQGTLHENVFMSQPPGFVDP 991

Query: 1287 QYPTHICQLKKALYGLKHAP--WYNELKCFL 1201
              PTH+C+L+KA+YGLK AP  WY ELK +L
Sbjct: 992  TRPTHVCRLRKAIYGLKQAPRAWYTELKSYL 1022


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  130 bits (326), Expect(2) = 2e-43
 Identities = 96/322 (29%), Positives = 161/322 (50%), Gaps = 25/322 (7%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQV----- 1026
            GF  S  ++SL  Y    + I+ L++VDD++VT S   A++  +Q L   F+++      
Sbjct: 1107 GFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLH 1166

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGS--PPTDA 852
            +   I           +Q KY  D+L  +    C+ +    +++  L  H+G    P DA
Sbjct: 1167 YFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDA 1226

Query: 851  TL*CQVTHSI---------ISFVVNKLS*LCVDLLTV----MKRILRNLKH-THHGLFLS 714
            T    V  ++         I+F VNK+        TV    +KRILR LK  T  GL L 
Sbjct: 1227 TNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLC 1286

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLPRV 534
            K + + ++A++D DWA + DDR ST  + +FLG   +S C+++Q  A + + +T    + 
Sbjct: 1287 KSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQ--ATVSRSSTESEYKA 1344

Query: 533  LLKLFG*VIS*RKY-TFLFLIAPP---IFYDNIDATYLCVNPIFHLRIKHIAINYHFIRN 366
            L      ++  +   T L + +PP   ++ DN+ A YL  NP+FH R KHI ++YHF+R 
Sbjct: 1345 LANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRE 1404

Query: 365  HGSNRSFVVSYISSNDQLASPY 300
              S +   + ++ + DQ+A  +
Sbjct: 1405 RVSQKLLEIDFVPTGDQVADGF 1426



 Score = 75.9 bits (185), Expect(2) = 2e-43
 Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK  TI I+ +  +     ++QLDV NAFLH  + EEVYM QP  +    +P ++C+
Sbjct: 1021 SPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCK 1080

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWFHQLK 1174
            L KALYGLK AP  WY+ L   L  L F   K
Sbjct: 1081 LDKALYGLKQAPRAWYSRLSKKLYDLGFQGSK 1112


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  130 bits (326), Expect(2) = 3e-43
 Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 25/322 (7%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQV----- 1026
            GF  S +++SL  Y   ++ I+ L++VDD++VT S   A+   ++ L   F+++      
Sbjct: 907  GFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLH 966

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGSP--PTDA 852
            +   I           +Q KY++D+L  +    C+ +    +++  L +++G P  P DA
Sbjct: 967  YFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDA 1026

Query: 851  TL*CQVTHSI---------ISFVVNKLS*LCVDLLT----VMKRILRNLKH-THHGLFLS 714
            T    V  ++         I+F VNK+        T     +KRILR LK  T  GL LS
Sbjct: 1027 THYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLS 1086

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLPRV 534
            K R + ++A++D DWA + DDR ST  + +FLG   +S  +++Q  A + + +T    + 
Sbjct: 1087 KSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQ--ATVSRSSTESEYKA 1144

Query: 533  LLKLFG*VIS*RKYTFLFLIAPP----IFYDNIDATYLCVNPIFHLRIKHIAINYHFIRN 366
            L      ++  +       +  P    ++ DN+ A YL  NP+FH R KHI ++YHF+R 
Sbjct: 1145 LANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRE 1204

Query: 365  HGSNRSFVVSYISSNDQLASPY 300
              S +   + ++ + DQ+A  +
Sbjct: 1205 RVSRKLLEIDFVPTGDQVADGF 1226



 Score = 75.5 bits (184), Expect(2) = 3e-43
 Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK  TI II +  +     ++QLDV NAFLH  + EEVYM QP  +  +  P ++C+
Sbjct: 821  SPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCK 880

Query: 1263 LKKALYGLKHAP--WYNEL 1213
            L KALYGLK AP  WY+ L
Sbjct: 881  LDKALYGLKQAPRAWYSRL 899


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  126 bits (317), Expect(2) = 4e-43
 Identities = 95/322 (29%), Positives = 160/322 (49%), Gaps = 25/322 (7%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQV----- 1026
            GF  S +++SL  Y    + I+ LV+VDD++V  S  +A+   ++ L   F+++      
Sbjct: 916  GFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLH 975

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGS--PPTDA 852
            +   I           +Q KY++D+L  +    C+ +    +++  L LH+G    P DA
Sbjct: 976  YFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDA 1035

Query: 851  TL*CQVTHSI---------ISFVVNKLS*LC----VDLLTVMKRILRNLKH-THHGLFLS 714
            +    V  ++         I F VNK+        +     MKRILR LK  T  GL +S
Sbjct: 1036 SNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKIS 1095

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLPRV 534
            K + + ++ ++D DWA N DDR ST  + +FLG   +S  +K+Q  A +P+ +T    + 
Sbjct: 1096 KSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQ--ATVPRSSTESEYKA 1153

Query: 533  LLKLFG*VIS*RKYTF-LFLIAPP---IFYDNIDATYLCVNPIFHLRIKHIAINYHFIRN 366
            L      ++  +     L + +PP   ++ DN+ A YL  NP+FH R KHI ++YHF+R 
Sbjct: 1154 LANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRE 1213

Query: 365  HGSNRSFVVSYISSNDQLASPY 300
                +   V +I + DQ+A  +
Sbjct: 1214 RMQRKLLEVEFIPTGDQVADGF 1235



 Score = 78.6 bits (192), Expect(2) = 4e-43
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK  TI II +  +     ++QLDV NAFLH  + EEVYM QP  +    +P ++C+
Sbjct: 830  SPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCK 889

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWFHQLK 1174
            L KALYGLK AP  WY +L   L +L F   K
Sbjct: 890  LDKALYGLKQAPRAWYAKLSQKLQHLGFQGSK 921


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  132 bits (332), Expect(2) = 2e-42
 Identities = 97/322 (30%), Positives = 160/322 (49%), Gaps = 25/322 (7%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQV----- 1026
            GF +S S++SL  Y   ++A++ LV+VDD++V  S+ +A    ++ L+  F+++      
Sbjct: 1090 GFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLH 1149

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGSP--PTDA 852
            +   I           +Q KY  D+L  +    C+ +    + +  L  H+G+P  P D+
Sbjct: 1150 YFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGPEDS 1209

Query: 851  TL*---------CQVTHSIISFVVNKLS*LCVDLLT----VMKRILRNLKHTHH-GLFLS 714
            T             +T   +SF VNK+        T      KRILR LKHT   GL +S
Sbjct: 1210 TRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKIS 1269

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLPRV 534
            K   L ++AF+D DWA   DDR ST  + +F+G   +S  +++Q  A + + +T    + 
Sbjct: 1270 KSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQ--ATVSRSSTEAEYKA 1327

Query: 533  LLKLFG*VIS*RKYTFLFLIAPP----IFYDNIDATYLCVNPIFHLRIKHIAINYHFIRN 366
            L  +   ++  +       I  P    ++ DNI A Y+  NP+FH R KHI ++YHF+R 
Sbjct: 1328 LANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRE 1387

Query: 365  HGSNRSFVVSYISSNDQLASPY 300
              + +   V YIS+ DQ+A  +
Sbjct: 1388 RVARKFLQVEYISTKDQVADGF 1409



 Score = 70.9 bits (172), Expect(2) = 2e-42
 Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            NPVVK  TI  I +  +     ++QLDV NAFLH  + E+V+M QP  +   Q   ++C+
Sbjct: 1006 NPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGY--EQKDGYVCK 1063

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWFHQLK 1174
            L KALYGLK AP  WY+ L   L  L F   K
Sbjct: 1064 LDKALYGLKQAPRAWYSRLSTKLHELGFKSSK 1095


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  129 bits (324), Expect(2) = 3e-42
 Identities = 102/364 (28%), Positives = 172/364 (47%), Gaps = 30/364 (8%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQV----- 1026
            GF  S +++SL  Y    + I+ L++VDD++V  S  +A+ T +Q L   F+++      
Sbjct: 734  GFQGSKADTSLFFYNKQGLTIFVLIYVDDIIVASSRQDAVLTLLQDLQKEFALKDLGDLH 793

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGS------- 867
            +   I           +Q KY +D+L  +    C+ +  S +++  L LH+G        
Sbjct: 794  YFLGIEVNKISNGIILTQEKYANDLLKRVGMIDCKPVSASLSTSEKLTLHEGDLLGLNDA 853

Query: 866  ----PPTDATL*CQVTHSIISFVVNKLS*LCVDLLTV----MKRILRNLKH-THHGLFLS 714
                    A     +T   I+F VNK+        T+    +KRILR LK  T  GL +S
Sbjct: 854  SNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTIHWATVKRILRYLKQCTKLGLKIS 913

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLPRV 534
            K + + ++ ++DTDWA N DDR ST  + +FLG   +S  +++Q  A + + +T    +V
Sbjct: 914  KSKSMLVSGYSDTDWAGNVDDRRSTRGFAVFLGDNLVSWNARKQ--ATVSRSSTESEYKV 971

Query: 533  LLKLFG*VIS*RKYTFLFLIAPPI----FYDNIDATYLCVNPIFHLRIKHIAINYHFIRN 366
            L      ++  +       ++ P+    + DN+ A YL  NP+FH R KHI ++YHF+R 
Sbjct: 972  LANATAEIMWIQTLLAELGVSSPLMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRE 1031

Query: 365  HGSNRSFVVSYISSNDQLASPYHLLSLTECCPRSASPMRAPSCE-----CLLRISHSTPA 201
                R   V ++ + DQ+A  +          ++ S +   SC       LL  +  TP 
Sbjct: 1032 RVQRRLLEVDFVPTGDQVADGF---------TKALSEVTIASCPLTFFFSLLLANACTPP 1082

Query: 200  RLPK 189
             LP+
Sbjct: 1083 TLPE 1086



 Score = 73.2 bits (178), Expect(2) = 3e-42
 Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK  TI ++ +  +     ++QLDV+NAFLH  + EEVYM QP  +     P  IC+
Sbjct: 648  SPVVKAATIRLVLSIAVSRGWTLRQLDVHNAFLHGILEEEVYMKQPPGYEDKANPGCICK 707

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWFHQLK 1174
            L KALYGLK AP  WY  L   L  L F   K
Sbjct: 708  LDKALYGLKQAPRAWYARLSQKLQQLGFQGSK 739


>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
          Length = 1002

 Score =  115 bits (289), Expect(2) = 3e-42
 Identities = 100/321 (31%), Positives = 151/321 (47%), Gaps = 25/321 (7%)
 Frame = -1

Query: 1196 TYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQVFRF 1017
            T+GF +S S++SL IY ++   +  LV+VDDLL+T +N   + T +Q L +RF+++    
Sbjct: 658  TWGFISSTSDTSLFIYKHNGNFLLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGL 717

Query: 1016 TILF-----YPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGSPP--T 858
               F              +Q KY +D+L        + +    ++  +L LH  S P  +
Sbjct: 718  VKDFLGFEALRTTTGLHLTQSKYTTDLLIKTKMHSAKPVPTPMSA--ALKLHAASGPAFS 775

Query: 857  DATL---------*CQVTHSIISFVVNKLS*LCVDLL----TVMKRILRNLKH-THHGLF 720
            D TL             T   I+F VNKLS           T  KR+LR LK   H GL 
Sbjct: 776  DPTLYRSTIGALQYLTYTRPDIAFAVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLH 835

Query: 719  LSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLP 540
             +    L L  +TD DWA + DDR ST+ Y +FLG    +  S++Q    + + +T+   
Sbjct: 836  FTPASSLHLQVYTDADWASSIDDRRSTTGYCVFLGTNLFTWSSRKQ--PVVARSSTKAEY 893

Query: 539  RVLLKLFG*VIS*R----KYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKHIAINYHFI 372
            R L      V   R    +     +  P I+ DN  A  L  NP+FH R KHI ++  ++
Sbjct: 894  RALAHASXEVAWLRSLFSELGISLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVXYV 953

Query: 371  RNHGSNRSFVVSYISSNDQLA 309
            R    ++  VVSY+ S +Q A
Sbjct: 954  REQVLDKKLVVSYVPSVEQXA 974



 Score = 86.3 bits (212), Expect(2) = 3e-42
 Identities = 38/91 (41%), Positives = 60/91 (65%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PV+K +TI ++ T  +  +  ++Q+D NNAFL+  ITE VY++QP  F+   +P H+C+
Sbjct: 574  SPVIKASTIRVVFTLAITYNWEIRQIDFNNAFLNGEITETVYLSQPAGFVSTSHPQHVCK 633

Query: 1263 LKKALYGLKHAPWYNELKCFLSYLWFHQLKQ 1171
            L+KALYGLK AP           +WFH+L++
Sbjct: 634  LQKALYGLKQAP----------RVWFHKLRE 654


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  127 bits (320), Expect(2) = 3e-42
 Identities = 101/322 (31%), Positives = 153/322 (47%), Gaps = 25/322 (7%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQV----- 1026
            GF +S +++SL  Y      I+ LV+VDD++V  S++  +A  ++ L   F+++      
Sbjct: 594  GFISSKADTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLH 653

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGS------- 867
            +   I           SQ  Y SDIL       C+      ++T  L + DG        
Sbjct: 654  YFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDA 713

Query: 866  ----PPTDATL*CQVTHSIISFVVNKLS*LCVDLLTV----MKRILRNLKHT-HHGLFLS 714
                    A     +T S +SF+VNK+        TV    +KRILR +K T   GL   
Sbjct: 714  SHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFG 773

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRHLPRV 534
            K   + ++AF+D DWA   DDR ST  + +FLG   IS  +++Q  A + + +T    + 
Sbjct: 774  KSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQ--ATVSRSSTEAEYKA 831

Query: 533  LLKLFG*VIS*RKYTFLFLIAPP----IFYDNIDATYLCVNPIFHLRIKHIAINYHFIRN 366
            L      V   RK      IA P    ++ DN+ ATYL  NP+FH R KHI I+YHF+R 
Sbjct: 832  LANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVRE 891

Query: 365  HGSNRSFVVSYISSNDQLASPY 300
              + +   + +IS+ DQLA  +
Sbjct: 892  QVAKKLLDIQFISTTDQLADGF 913



 Score = 74.3 bits (181), Expect(2) = 3e-42
 Identities = 41/86 (47%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -3

Query: 1437 VVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQLK 1258
            VVK  TI +I +  +     ++QLDV NAFLH  + EEVYM QP  F     P ++C+L 
Sbjct: 510  VVKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPPGFENKGQPNYLCKLD 569

Query: 1257 KALYGLKHAP--WYNELKCFLSYLWF 1186
            KALYGLK AP  WY+ L   L  L F
Sbjct: 570  KALYGLKQAPRAWYSRLSTKLQELGF 595


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  119 bits (298), Expect(2) = 7e-42
 Identities = 98/327 (29%), Positives = 153/327 (46%), Gaps = 27/327 (8%)
 Frame = -1

Query: 1214 LNAFFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFS 1035
            L++  L +GF+ S ++SS+ ++F     +  LV+VDD+LVT S+S  I++ +  L   F+
Sbjct: 1048 LSSALLQWGFSMSRTDSSMFLHFGKATTLIVLVYVDDILVTGSSSTQISSLIAKLDSVFA 1107

Query: 1034 IQ-----VFRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*------S 888
            ++      F   I           SQ KYISD+L          L+ +K +        +
Sbjct: 1108 LRDLGQLSFFLGIEVSYNEGSMTLSQTKYISDLLHRTE------LFDTKPANTPGAVGKN 1161

Query: 887  LLLHDGSPPTDATL*CQVTHSI---------ISFVVNKLS*LCVDLLTV----MKRILRN 747
            L   DG P TD T    V  ++         I+F VNK         T     +KRILR 
Sbjct: 1162 LSKFDGDPMTDVTHYRSVVGALQYVTLTRPDIAFAVNKACQFMQQPTTAHWLSVKRILRY 1221

Query: 746  LKHT-HHGLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAP 570
            L+ T   GL  S   +L +  FTD DW  + DDR S+S YL++LGG  +S  S +Q +  
Sbjct: 1222 LRGTMQDGLLFSPSSNLTIEGFTDADWGAHLDDRRSSSGYLVYLGGNLVSWSSTKQKVVS 1281

Query: 569  LPKLNT--RHLPRVLLKLFG*VIS*RKYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKH 396
                 +  R L     ++       ++        P ++YDNI A ++  NP+FH R KH
Sbjct: 1282 RSSAESEYRGLVFATAEIVWMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKH 1341

Query: 395  IAINYHFIRNHGSNRSFVVSYISSNDQ 315
            I I+ HFIR+        + ++ + +Q
Sbjct: 1342 IEIDLHFIRDQVMRGKIQLQFVPTEEQ 1368



 Score = 81.6 bits (200), Expect(2) = 7e-42
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK  TI II T  L     ++QLDV+NAFL+  + E+VYM+QP  +   Q+P  +C+
Sbjct: 970  SPVVKAATIRIILTVALSFKWEIRQLDVHNAFLNGELEEQVYMSQPPGYFDPQFPNRVCR 1029

Query: 1263 LKKALYGLKHAP--WYNELKCFL 1201
            LKKALYGLK AP  W+  L   L
Sbjct: 1030 LKKALYGLKQAPRAWFQRLSSAL 1052


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  120 bits (302), Expect(2) = 1e-41
 Identities = 91/320 (28%), Positives = 157/320 (49%), Gaps = 23/320 (7%)
 Frame = -1

Query: 1190 GFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQ-----V 1026
            GF  S +++SL  Y    ++I+ L++VDD++V  S  +A +T +Q LS  F+++      
Sbjct: 1053 GFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLH 1112

Query: 1025 FRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGS--PPTDA 852
            +   I  +        SQ KY SD+L  +    C+ +    +++  L +++G+   P D+
Sbjct: 1113 YFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDS 1172

Query: 851  TL*CQV---------THSIISFVVNKLS*LCVDLLT----VMKRILRNLKHT-HHGLFLS 714
            T    V         T   ISF +NK+        T     +KRILR +K+T   GL   
Sbjct: 1173 TQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFC 1232

Query: 713  KQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNTRH--LP 540
            +   L ++ F+D DWA + DDR ST  + +FLG   +S  +++Q       +   +  L 
Sbjct: 1233 RNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALA 1292

Query: 539  RVLLKLFG*VIS*RKYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKHIAINYHFIRNHG 360
                ++       ++       A  ++ DN+ A YL  NPIFH R KHI +++HF+R   
Sbjct: 1293 NATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERV 1352

Query: 359  SNRSFVVSYISSNDQLASPY 300
            + +   ++YIS+ DQ+A  +
Sbjct: 1353 ARKLLEIAYISTKDQVADGF 1372



 Score = 79.3 bits (194), Expect(2) = 1e-41
 Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVK  TI I+ +  +     ++QLDV NAFLH  + EEVYM QP  +     P ++C+
Sbjct: 967  SPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCK 1026

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWF 1186
            L KALYGLK AP  WY+ L   LS L F
Sbjct: 1027 LDKALYGLKQAPRAWYSRLSTKLSELGF 1054


>ref|XP_008365969.1| PREDICTED: uncharacterized protein LOC103429605 [Malus domestica]
          Length = 1188

 Score =  113 bits (283), Expect(2) = 1e-41
 Identities = 91/322 (28%), Positives = 145/322 (45%), Gaps = 23/322 (7%)
 Frame = -1

Query: 1205 FFLTYGFTNSNSNSSLLIYFNSNIAIYFLVFVDDLLVTDSNSNAIATFVQALSHRFSIQ- 1029
            F    GF  S    SL ++    + I  L++VDD+L+T ++   +A  ++ L   FS++ 
Sbjct: 827  FLFQLGFDESTCXYSLFVFNKRGVYIILLIYVDDILITGNSPRQMAHLIKKLGSLFSMKD 886

Query: 1028 ----VFRFTILFYPXXXXXXXSQHKYISDILTNMTGGWCQVLYYSKTST*SLLLHDGSPP 861
                 +   I            Q KY  D++T       + +    +S   L  + G P 
Sbjct: 887  LGPLSYFLGIEVKYNGDAMHLCQSKYALDLJTRTKFTXAKPISTPVSSGQKLSAYVGDPY 946

Query: 860  TD---------ATL*CQVTHSIISFVVNKLS*LCVDLLT-------VMKRILRNLKHTHH 729
             +         A     +T   +S+ VN++   C  + +        +KRILR LK T++
Sbjct: 947  ANXEMYRSVVGALQYLTITRPDLSYAVNQI---CQFMHSPKNTHWMAVKRILRYLKATYN 1003

Query: 728  GLFLSKQRDLRLTAFTDTDWARNHDDRSSTSTYLIFLGGAPIS*CSKRQWLAPLPKLNT- 552
               L K     LTA++D D+A N D R ST  + ++LG + +S  SK+Q           
Sbjct: 1004 HGLLYKPGTATLTAYSDADYAGNPDTRHSTGGFCVYLGSSLVSWSSKKQKTVSRSSAEAE 1063

Query: 551  -RHLPRVLLKLFG*VIS*RKYTFLFLIAPPIFYDNIDATYLCVNPIFHLRIKHIAINYHF 375
             R L     +L   + S  K   L L+ P I+ DNI +  L  NP+FH R KH+ ++YH+
Sbjct: 1064 YRQLAYTAAELSW-LRSLYKDLHLHLVPPTIWCDNISSIALASNPVFHSRTKHLEVDYHY 1122

Query: 374  IRNHGSNRSFVVSYISSNDQLA 309
            +R     +   VSY+ S DQLA
Sbjct: 1123 VREKVVRKQLFVSYVCSQDQLA 1144



 Score = 86.7 bits (213), Expect(2) = 1e-41
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = -3

Query: 1443 NPVVKHTTICIIHTFVLHLDLPVKQLDVNNAFLHETITEEVYMTQPLSFIGAQYPTHICQ 1264
            +PVVKH+TI ++ +  +     V+QLDV NAFLH  + E VYM QP  FI  Q+P H+C+
Sbjct: 746  SPVVKHSTIRLVLSLAVSKKWXVRQLDVQNAFLHGYLHEHVYMXQPSGFIDKQFPHHVCK 805

Query: 1263 LKKALYGLKHAP--WYNELKCFLSYLWFHQ 1180
            L+++LYGLK AP  W+     FL  L F +
Sbjct: 806  LQRSLYGLKQAPRAWFQRFSDFLFQLGFDE 835