BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00019914
         (1419 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   256   2e-65
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   244   9e-62
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   236   4e-59
emb|CDP17738.1| unnamed protein product [Coffea canephora]            235   6e-59
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   235   7e-59
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   234   9e-59
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   225   7e-56
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   224   1e-55
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        224   1e-55
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  223   3e-55
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   223   3e-55
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   223   4e-55
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   223   4e-55
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   222   5e-55
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              221   8e-55
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              221   1e-54
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           220   2e-54
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   220   2e-54
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   219   5e-54
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   219   5e-54

>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  256 bits (655), Expect = 2e-65
 Identities = 134/354 (37%), Positives = 211/354 (59%), Gaps = 5/354 (1%)
 Frame = +1

Query: 370  NKLVSELGLGSKKCYDCGKTSHFIKDCYK--EKNKQKENKRD--EVNLVSSNSDLDPSEV 537
            N+  S+   G + C+ CGK  HF K CYK  E+NK K+   D  E +L  S    +P+ V
Sbjct: 208  NRSRSKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMV 267

Query: 538  YVLINSVDDSVELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTC 717
             +   + D+++ +     S  ++W+LD+G SFH+   ++WF+   E   G+V M N+   
Sbjct: 268  LL---ATDETLVVT---DSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYS 321

Query: 718  KVDGIDDISVKFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*AL 897
             V GI  I ++ ++G  + L  VRY+P MTRNLI++G LE+ G   K ++ +LK+ K   
Sbjct: 322  PVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCS 381

Query: 898  VICKSMKRNGIYVTVEEVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGK 1077
             I K  KR+ +Y+ ++ V +      S+    +T  WH RL H+S KG+++L +KG   +
Sbjct: 382  TILKGQKRDTLYI-LDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRR 440

Query: 1078 DCVSDMPFCDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNP-TLGGKRYFLSII 1254
            + + ++ FC+ CV GKQH++SF+   H T   L YVHSDLWG   NP +LG  +YF+S +
Sbjct: 441  EVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFV 500

Query: 1255 DDYSKRVWIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFD 1416
            DDYS++VWI+ L+ K   F+ F   +K +EN + +K+K L T+N LE+CN  F+
Sbjct: 501  DDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFE 554


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  244 bits (624), Expect = 9e-62
 Identities = 124/341 (36%), Positives = 200/341 (58%), Gaps = 3/341 (0%)
 Frame = +1

Query: 406  KCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            +C  C +  H+ KDC K + K+K  +  + N+    SD++           D S+ ++LS
Sbjct: 169  ECAFCHEKGHWKKDCPKLQKKEKVPQ--DANVAECKSDVES----------DISLIVSLS 216

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
              S+  +WILDSG ++H+   R+WF    E D G V M N+  CK  GI  I ++ ++G 
Sbjct: 217  ASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGS 276

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNGIYVTVE 945
               L+ VRY+P++ +NLI++G LE  GL+  + + +LK T  ALV+ K + +N +Y    
Sbjct: 277  TRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQG 336

Query: 946  EVIKNSSFSVSSANTGDTHK---WHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHCV 1116
              +  +  + +S++  D      WH RL H   K L++L ++G+        + FC+HCV
Sbjct: 337  STVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCV 396

Query: 1117 LGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLLKD 1296
            LGKQ ++ F + +H T  ILDYVHSD+WGPA  P++GG+ YF++ +DD+S+RVW+F +K+
Sbjct: 397  LGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKN 456

Query: 1297 KSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            K+   + F   +  +EN TG+KIK L T+N  E+ +  F N
Sbjct: 457  KNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLN 497


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  236 bits (601), Expect = 4e-59
 Identities = 125/351 (35%), Positives = 191/351 (54%), Gaps = 2/351 (0%)
 Frame = +1

Query: 370  NKLVSELGLGSKKCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLI 549
            NK +S+       C  C +  H+  DC K+K   K++++  V+   +  D +  E   L+
Sbjct: 212  NKPMSKGAKPDDVCNYCKEKGHWKFDCPKKK---KQSEKQSVSAAVAEEDTNSEEDIALV 268

Query: 550  NSVDDSVELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDG 729
                           H   W+LDSGAS+H+   REWF T  + D G + M N+  CKV G
Sbjct: 269  AD---------EHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVG 319

Query: 730  IDDISVKFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICK 909
               I ++ ++G   TL  VR++P MT+NLI++  L+  G     ++ +L++ K + +I K
Sbjct: 320  TGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILK 379

Query: 910  SMKRNGIYVTVEEVIKNSSFSVSSA--NTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDC 1083
             + R  +Y      +  S+   SS       T  WH RL H+  +G+++L+++ +     
Sbjct: 380  GVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHK 439

Query: 1084 VSDMPFCDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDY 1263
            V  + FC+HCV GK H+  F   +H+T   LDY+HSD WGP    +LGG R+F+SIIDDY
Sbjct: 440  VKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDY 499

Query: 1264 SKRVWIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFD 1416
            S+  W++++K KS  F  F   +  +EN TGKKIK L T+N LEFC  EFD
Sbjct: 500  SRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFD 550


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  235 bits (600), Expect = 6e-59
 Identities = 129/335 (38%), Positives = 195/335 (58%), Gaps = 4/335 (1%)
 Frame = +1

Query: 406  KCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            +C  C +  H+ KDC K K K K  +  +VN+    SD + S+  + ++ +         
Sbjct: 255  ECAFCREKGHWKKDCPKLKKKGKAPQ--DVNVAECKSDAE-SDFSLAVSRLT-------- 303

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
              SH  +WILDS  ++H+   REWF    E D G V M N+  CK  GI  I ++ ++G 
Sbjct: 304  --SHPDEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGS 361

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNGIYVTV- 942
               LK VRY+P + R+LI++G LE  GL  ++ + +LK+T  AL++ K +++N +Y    
Sbjct: 362  TRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQG 421

Query: 943  EEVIKNSSFSVSSANTGD---THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHC 1113
              V+  ++ + SS++  D   T  WH RL     K L+ L ++G+     V  + FC+HC
Sbjct: 422  STVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHC 481

Query: 1114 VLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLLK 1293
            VL KQ K+ F +G+H T  ILDYVHSD+WGPA  P+LGG+ YF++ IDD+S+RVW+F +K
Sbjct: 482  VLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMK 541

Query: 1294 DKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEF 1398
             K      F   + R+EN TG+KIK L T+N  E+
Sbjct: 542  SKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEY 576


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  235 bits (599), Expect = 7e-59
 Identities = 118/338 (34%), Positives = 190/338 (56%)
 Frame = +1

Query: 406  KCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            KC+ C K  HF KDC   +                                 ++V+  ++
Sbjct: 226  KCFICHKEGHFKKDCPDRRQ--------------------------------NTVKKTVN 253

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
              + +    L  GA F  +  +   +T  E+D G+V++ NN  CK+ G   + +K  +G 
Sbjct: 254  RWTRVRSGYLIQGALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGI 313

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNGIYVTVE 945
               L+ VRYIPE+ RNLI++G L++ G   K E   L++ + +L + K   +NG+Y  + 
Sbjct: 314  ERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIG 373

Query: 946  EVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHCVLGK 1125
            + +     +V   + G T  WH RL H+S++GL+ L ++GV G   ++D+PFC+HCV GK
Sbjct: 374  QTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGK 433

Query: 1126 QHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLLKDKSG 1305
              ++ F+  +H+T   LDY+HSDLWGP+  P++GG RYFL++IDDYS++VWI+ LK+KS 
Sbjct: 434  ATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSE 493

Query: 1306 TFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            TF  F   +  +E  T +K+K L T+N LEF + +F++
Sbjct: 494  TFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNS 531


>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103833265
            [Brassica rapa]
          Length = 3353

 Score =  234 bits (598), Expect = 9e-59
 Identities = 131/338 (38%), Positives = 191/338 (56%), Gaps = 2/338 (0%)
 Frame = +1

Query: 409  CYDCGKTSHFIKDCYKEKNKQKENKRDE-VNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            C+ CGK  H+ +DC    NK   N  ++ VN VS     +  +  VL  S+ DS      
Sbjct: 173  CFSCGKEGHWKRDC---PNKGHMNGSEQAVNAVS-----EMRQPLVLTASIHDS------ 218

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
                 ++W+LDSG +FH+   +E    L E D   V+M NN  C+V GI  I +   +G 
Sbjct: 219  ----RNEWVLDSGCTFHITPDKEVLFDLQEGDGSKVLMANNTQCEVKGIGKIRITNEDGT 274

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNGIYVTVE 945
             + L+ VRY+P+M+RNLI+ G LE+ G   +  +  +   K    +      NG+Y  ++
Sbjct: 275  EVILRDVRYMPDMSRNLISYGMLEKSGCNYQGGDFTITFYKEGQKVITGKYENGLYY-LQ 333

Query: 946  EVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHCVLGK 1125
              +     ++S +    T  WH RL H+S+K ++LL ++G   K  V  + FC+ CVLGK
Sbjct: 334  GTVSRGEANISESTDSKTKVWHTRLGHMSSKNMELLAKEGFIPKTEVGKLEFCEGCVLGK 393

Query: 1126 QHKLSFSSGVHKTNRILDYVHSDLWGPASNP-TLGGKRYFLSIIDDYSKRVWIFLLKDKS 1302
            +HKLSF +  H T  IL+YVHSDLWG  S P +LGG +YF+S IDD+SK+VW++ L+ K 
Sbjct: 394  KHKLSFPTAKHTTKGILEYVHSDLWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKD 453

Query: 1303 GTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFD 1416
              F  F   ++ +E+ T KKIK L T+N LEFCN  FD
Sbjct: 454  EAFSKFKEWKEAVESHTEKKIKCLRTDNGLEFCNNRFD 491



 Score =  234 bits (598), Expect = 9e-59
 Identities = 131/338 (38%), Positives = 191/338 (56%), Gaps = 2/338 (0%)
 Frame = +1

Query: 409  CYDCGKTSHFIKDCYKEKNKQKENKRDE-VNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            C+ CGK  H+ +DC    NK   N  ++ VN VS     +  +  VL  S+ DS      
Sbjct: 2248 CFSCGKEGHWKRDC---PNKGHMNGSEQAVNAVS-----EMRQPLVLTASIHDS------ 2293

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
                 ++W+LDSG +FH+   +E    L E D   V+M NN  C+V GI  I +   +G 
Sbjct: 2294 ----RNEWVLDSGCTFHITPDKEVLFDLQEGDGSKVLMANNTQCEVKGIGKIRITNEDGT 2349

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNGIYVTVE 945
             + L+ VRY+P+M+RNLI+ G LE+ G   +  +  +   K    +      NG+Y  ++
Sbjct: 2350 EVILRDVRYMPDMSRNLISYGMLEKSGCNYQGGDFTITFYKEGQKVITGKYENGLYY-LQ 2408

Query: 946  EVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHCVLGK 1125
              +     ++S +    T  WH RL H+S+K ++LL ++G   K  V  + FC+ CVLGK
Sbjct: 2409 GTVSRGEANISESTDSKTKVWHTRLGHMSSKNMELLAKEGFIPKTEVGKLEFCEGCVLGK 2468

Query: 1126 QHKLSFSSGVHKTNRILDYVHSDLWGPASNP-TLGGKRYFLSIIDDYSKRVWIFLLKDKS 1302
            +HKLSF +  H T  IL+YVHSDLWG  S P +LGG +YF+S IDD+SK+VW++ L+ K 
Sbjct: 2469 KHKLSFPTAKHTTKGILEYVHSDLWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKD 2528

Query: 1303 GTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFD 1416
              F  F   ++ +E+ T KKIK L T+N LEFCN  FD
Sbjct: 2529 EAFSKFKEWKEAVESHTEKKIKCLRTDNGLEFCNNRFD 2566


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  225 bits (573), Expect = 7e-56
 Identities = 125/345 (36%), Positives = 192/345 (55%), Gaps = 4/345 (1%)
 Frame = +1

Query: 397  GSKKCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVEL 576
            G K C  C K  HFIK+C+K +NK+K     + ++V+S  + D  +  V+      S + 
Sbjct: 232  GKKFCKYCKKKIHFIKECWKLQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHD- 290

Query: 577  NLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISVKF 753
                     +WILD+  SFH+   R+WF +      G V+ M N+   ++ GI  + +K 
Sbjct: 291  ---------EWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKT 341

Query: 754  NNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALV-ICKSMKRNGI 930
            ++G   TLK VR+IP M RNLI++  L+  G        ++K++K +LV +   M    +
Sbjct: 342  HDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 401

Query: 931  YVTVEEVIKNS--SFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFC 1104
            YV     +  S  + +V+      T+ WH RL H+S  G+  L ++ +       +M FC
Sbjct: 402  YVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 461

Query: 1105 DHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIF 1284
            + CV GK  ++ F++ VH+T  ILDYVH+DLWGP+  P+LGG RY L+IIDDYS++VW +
Sbjct: 462  ERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPY 521

Query: 1285 LLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
             LK K  TF +F   +  IE  T K++K L T+N  EFC+  FD+
Sbjct: 522  FLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDD 566


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  224 bits (571), Expect = 1e-55
 Identities = 117/344 (34%), Positives = 192/344 (55%), Gaps = 7/344 (2%)
 Frame = +1

Query: 403  KKCYDCGKTSHFIKDCYKEKNKQK-------ENKRDEVNLVSSNSDLDPSEVYVLINSVD 561
            K C  C +  H I DC+K +NK+K       + K++E    +  +D  P     L+ +  
Sbjct: 176  KSCKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAE--LLVAYA 233

Query: 562  DSVELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDI 741
              V+ +        +W+LD+G ++H+   R+WF T      G+V+M +N  CKV G+  I
Sbjct: 234  GCVQTS-------DEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTI 286

Query: 742  SVKFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKR 921
             +K  +GC+ TL  VR+IP + RNLI++  L+  G      + +LK+TK +LV+ K+  +
Sbjct: 287  QIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIK 346

Query: 922  NGIYVTVEEVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPF 1101
            N     ++      + +  + +  ++  WH RL H+S  GL  L+++G+     +  + F
Sbjct: 347  NADLYHLQGTTIVGNVAAVTDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKF 406

Query: 1102 CDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWI 1281
            C+HC+ GK  ++ F++  H T  ILDYVHSDLWGPA   + GG RY ++I+DDYS++VW 
Sbjct: 407  CEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKVWP 466

Query: 1282 FLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEF 1413
            + LK K   F  F   +  +E  T +K+K L T+N +EFC+ +F
Sbjct: 467  YFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQF 510


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  224 bits (571), Expect = 1e-55
 Identities = 120/342 (35%), Positives = 190/342 (55%), Gaps = 4/342 (1%)
 Frame = +1

Query: 403  KKCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNL 582
            +KC+ C K  H+I+DC+++K K+ + K  +  + S     D S+ Y    S D  V  N 
Sbjct: 234  RKCFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASD----DGSDGY---QSADLLVASNS 286

Query: 583  SEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNG 762
            + K    +W++DSG SFH+   +  F      D G V+M NN  C + GI        + 
Sbjct: 287  NTKG---QWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCK---RSR 340

Query: 763  CML----TLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNGI 930
            C++    +L  VR+ P + RNLI++G L+ +G   K     L++ K   ++ K +  NG+
Sbjct: 341  CLMELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGL 400

Query: 931  YVTVEEVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDH 1110
            YV     +       + +    T  WH RL H+S KGL+ L+++G+ G D +  + FC++
Sbjct: 401  YVLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCEN 460

Query: 1111 CVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLL 1290
            C+ GK H+  F+ G H + ++LDY H D WGPA  P+L G RYF+S+IDDYS++VWI++L
Sbjct: 461  CIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYIL 520

Query: 1291 KDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFD 1416
            K K    + F   +  +EN +  K+K L T+N LEFC+  F+
Sbjct: 521  KIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFE 562


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  223 bits (568), Expect = 3e-55
 Identities = 119/339 (35%), Positives = 201/339 (59%), Gaps = 3/339 (0%)
 Frame = +1

Query: 406  KCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            KCY+CGK  H  KDC+  K   +++     +     S  D  EV     +V    +  L+
Sbjct: 229  KCYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAVSTKGKNRLT 288

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
            +      WI+DSGA++H+   R+WF T      G+V M N+   ++ GI  + +K  +G 
Sbjct: 289  DV-----WIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGT 343

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMK-RNGIYVTV 942
            + TL+ VR++ E+ +NL++VG+L+++G    I+  +LK+ K +LV+ K+ K    +Y+ +
Sbjct: 344  IRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLL 403

Query: 943  EEVIKNSSFSVSSANTGD-THKWHGRLAHVSNKGLKLLNEKGVF-GKDCVSDMPFCDHCV 1116
             +  + +  SV+  +  + T  WH RL H+S +GLK+L E+ +  G   VS +PFC+HCV
Sbjct: 404  GDTWQMADASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVS-LPFCEHCV 462

Query: 1117 LGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLLKD 1296
            + KQH+L F+    ++  ILD +HSD+W  +   ++GG +YF+S IDDYS+R+W++ +K 
Sbjct: 463  ISKQHRLKFAKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKK 521

Query: 1297 KSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEF 1413
            KSG +  F   + ++E  TGK+IK L T+N  E+ + +F
Sbjct: 522  KSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDF 560


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  223 bits (568), Expect = 3e-55
 Identities = 125/345 (36%), Positives = 192/345 (55%), Gaps = 4/345 (1%)
 Frame = +1

Query: 397  GSKKCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVEL 576
            G K C  C K +HFI++C+K +NK+K     + ++V+S  + D  +  V+      S + 
Sbjct: 232  GKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHD- 290

Query: 577  NLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISVKF 753
                     +WILD+  SFH+   R+WF +      G V+ M ++   ++ GI  + +K 
Sbjct: 291  ---------EWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKT 341

Query: 754  NNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALV-ICKSMKRNGI 930
            ++G   TLK VR+IP M RNLI++  L+  G        ++K++K +LV +   M    +
Sbjct: 342  HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANL 401

Query: 931  YVTVEEVIKNS--SFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFC 1104
            YV     +  S  + +VS      T+ WH RL H+S  G+  L ++ +        M FC
Sbjct: 402  YVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFC 461

Query: 1105 DHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIF 1284
            +HCV GK  ++ F++ VH+T  ILDYVH+DLWGP+    LGG RY L+IIDDYS++VW +
Sbjct: 462  EHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPY 521

Query: 1285 LLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
             LK K  TF +F   + RIE  T K++K L T+N  EFC+  FD+
Sbjct: 522  FLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDD 566


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  223 bits (567), Expect = 4e-55
 Identities = 127/348 (36%), Positives = 197/348 (56%), Gaps = 7/348 (2%)
 Frame = +1

Query: 397  GSKK-CYDCGKTSHFIKDCYKEKNKQKENKRD-EVNLVSSNSDLDPSEVYVLINSVDDSV 570
            G+KK C  C   +H I +C K + K+++NK+D +V++ S+ +  D S          D +
Sbjct: 227  GNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDS---------GDCL 277

Query: 571  ELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISV 747
             +     +   +WILDS  SFH+ + R WF +      G V+ M ++  C + GI  + +
Sbjct: 278  VVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQI 337

Query: 748  KFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNG 927
            K ++G   TLK VRYIP M+RNLI++  L+  G      + +LK++K +LV  K    + 
Sbjct: 338  KTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSA 397

Query: 928  IYVTVEEVIKNSSFSVSSANTGD----THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDM 1095
                +       S S ++A T D    T+ WH RL H+S+ G+  L ++ +      S +
Sbjct: 398  KLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKI 457

Query: 1096 PFCDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRV 1275
             FC+HC+ GK  ++ F++ VH T   LDYVH+DLWGP+  P+LGG RY L+IIDDYS++V
Sbjct: 458  KFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517

Query: 1276 WIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            W + LK K  TF +F N +  IE  T +K+K L T+N  EFC+  F++
Sbjct: 518  WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFND 565


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  223 bits (567), Expect = 4e-55
 Identities = 127/348 (36%), Positives = 197/348 (56%), Gaps = 7/348 (2%)
 Frame = +1

Query: 397  GSKK-CYDCGKTSHFIKDCYKEKNKQKENKRD-EVNLVSSNSDLDPSEVYVLINSVDDSV 570
            G+KK C  C   +H I +C K + K+++NK+D +V++ S+ +  D S          D +
Sbjct: 227  GNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDS---------GDCL 277

Query: 571  ELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISV 747
             +     +   +WILDS  SFH+ + R WF +      G V+ M ++  C + GI  + +
Sbjct: 278  VVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQI 337

Query: 748  KFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNG 927
            K ++G   TLK VRYIP M+RNLI++  L+  G      + +LK++K +LV  K    + 
Sbjct: 338  KTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSA 397

Query: 928  IYVTVEEVIKNSSFSVSSANTGD----THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDM 1095
                +       S S ++A T D    T+ WH RL H+S+ G+  L ++ +      S +
Sbjct: 398  KLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKI 457

Query: 1096 PFCDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRV 1275
             FC+HC+ GK  ++ F++ VH T   LDYVH+DLWGP+  P+LGG RY L+IIDDYS++V
Sbjct: 458  KFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517

Query: 1276 WIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            W + LK K  TF +F N +  IE  T +K+K L T+N  EFC+  F++
Sbjct: 518  WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFND 565


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  222 bits (566), Expect = 5e-55
 Identities = 126/348 (36%), Positives = 197/348 (56%), Gaps = 7/348 (2%)
 Frame = +1

Query: 397  GSKK-CYDCGKTSHFIKDCYKEKNKQKENKRD-EVNLVSSNSDLDPSEVYVLINSVDDSV 570
            G+KK C  C   +H I +C K + K+++NK+D +V++ S+ +  D S          D +
Sbjct: 227  GNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDS---------GDCL 277

Query: 571  ELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISV 747
             +     +   +WILDS  SFH+ + R WF +      G V+ M ++  C + GI  + +
Sbjct: 278  VVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQI 337

Query: 748  KFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRNG 927
            K ++G   TLK VRYIP M+RNLI++  L+  G      + +LK++K +LV  K    + 
Sbjct: 338  KTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSA 397

Query: 928  IYVTVEEVIKNSSFSVSSANTGD----THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDM 1095
                +       S S ++A T D    T+ WH RL H+S+ G+  L ++ +      S +
Sbjct: 398  KLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKI 457

Query: 1096 PFCDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRV 1275
             FC+HC+ GK  ++ F++ VH T   LDYVH+DLWGP+  P+LGG RY L++IDDYS++V
Sbjct: 458  KFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKV 517

Query: 1276 WIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            W + LK K  TF +F N +  IE  T +K+K L T+N  EFC+  F++
Sbjct: 518  WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFND 565


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  221 bits (564), Expect = 8e-55
 Identities = 117/338 (34%), Positives = 198/338 (58%), Gaps = 2/338 (0%)
 Frame = +1

Query: 406  KCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            KCY CG   H  K+C+  K   ++N     +     S  D  E+     +     E  L+
Sbjct: 229  KCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLN 288

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
            +      WI+DSGA++H+  +R+WF +      G V M N+   ++ G+  I +K ++G 
Sbjct: 289  DV-----WIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGT 343

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMK-RNGIYVTV 942
            +  ++GVR++  + +NL++VG+L+++G     E+ +LK+ K  LV+ K+ K  + +Y+ +
Sbjct: 344  VRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLL 403

Query: 943  EEVIKNSSFSVSSANTGD-THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHCVL 1119
             + ++ +  SV++A+  + T  WH RL H+S +GLK+L E+ +       ++PFC+HCV+
Sbjct: 404  GDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVI 463

Query: 1120 GKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLLKDK 1299
             KQH+L F+    ++  ILD +HSD+W  +   +LGG RYF+S IDDYS+R+W++ +K K
Sbjct: 464  SKQHRLKFARVTTRSKHILDLIHSDVW-ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKK 522

Query: 1300 SGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEF 1413
            S  F  F   + +IE  TGKKIK L T+N  E+ + EF
Sbjct: 523  SDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  221 bits (562), Expect = 1e-54
 Identities = 117/338 (34%), Positives = 198/338 (58%), Gaps = 2/338 (0%)
 Frame = +1

Query: 406  KCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVELNLS 585
            KCY CG   H  K+C+  K   ++N     +     S  D  E+     +     E  L+
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 586  EKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDISVKFNNGC 765
            +      WI+DSGA++H+  +R+WF +      G V M N+   ++ G+  I +K ++G 
Sbjct: 289  DV-----WIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGT 343

Query: 766  MLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMK-RNGIYVTV 942
            +  ++GVR++  + +NL++VG+L+++G     E+ +LK+ K  LV+ K+ K  + +Y+ +
Sbjct: 344  VRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLL 403

Query: 943  EEVIKNSSFSVSSANTGD-THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFCDHCVL 1119
             + ++ +  SV++A+  + T  WH RL H+S +GLK+L E+ +       ++PFC+HCV+
Sbjct: 404  GDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVI 463

Query: 1120 GKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIFLLKDK 1299
             KQH+L F+    ++  ILD +HSD+W  +   +LGG RYF+S IDDYS+R+W++ +K K
Sbjct: 464  SKQHRLKFARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKK 522

Query: 1300 SGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEF 1413
            S  F  F   + +IE  TGKKIK L T+N  E+ + EF
Sbjct: 523  SDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEF 560


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  220 bits (561), Expect = 2e-54
 Identities = 128/349 (36%), Positives = 197/349 (56%), Gaps = 8/349 (2%)
 Frame = +1

Query: 397  GSKK-CYDCGKTSHFIKDCYKEKNKQKENKRD-EVNLVSSN-SDLDPSEVYVLINSVDDS 567
            G+KK C  C   +H I +C K + K+++NK+D +V++ S+  SD D  +  V+       
Sbjct: 229  GNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAG 288

Query: 568  VELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDIS 744
             +          +WILDS  SFH+ + R WF +      G V+ M ++  C + GI  + 
Sbjct: 289  HD----------EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQ 338

Query: 745  VKFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKRN 924
            +K ++G   TLK VRYIP M+RNLI++  L+  G      + +LK++K +LV  K    +
Sbjct: 339  IKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNS 398

Query: 925  GIYVTVEEVIKNSSFSVSSANTGD----THKWHGRLAHVSNKGLKLLNEKGVFGKDCVSD 1092
                 +       S S ++A T D    T+ WH RL H+S+ G+  L ++ +      S 
Sbjct: 399  AKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSK 458

Query: 1093 MPFCDHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKR 1272
            + FC+HC+ GK  ++ F++ VH T   LDYVH+DLWGP+  P+LGG RY L+IIDDYS++
Sbjct: 459  IKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRK 518

Query: 1273 VWIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            VW + LK K  TF +F N +  IE  T +K+K L T+N  EFC+  F++
Sbjct: 519  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFND 567


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  220 bits (561), Expect = 2e-54
 Identities = 123/345 (35%), Positives = 193/345 (55%), Gaps = 4/345 (1%)
 Frame = +1

Query: 397  GSKKCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVEL 576
            G K C  C K +HFI++C+K +NK+K     + ++V+S  + D  +  V+          
Sbjct: 127  GKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSADNSDSGDCLVVFV-------- 178

Query: 577  NLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISVKF 753
             +   SH  +WILD+  SFH+   R+WF +      G V+ M ++   ++ GI  + +K 
Sbjct: 179  -VCVSSH-DEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKT 236

Query: 754  NNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALV-ICKSMKRNGI 930
            ++G   TLK VR+IP M RNLI++  L+  G        ++K++K +LV +   M    +
Sbjct: 237  HDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 296

Query: 931  YVTVEEVIKN--SSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFC 1104
            YV     +    ++  VS      T+ WH RL H+S  G+  L ++ +       +M FC
Sbjct: 297  YVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 356

Query: 1105 DHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIF 1284
            +HCV GK  ++ F++ VH+T  ILDYVH+DLWGP+  P+LGG RY L+IIDDYS++VW +
Sbjct: 357  EHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPY 416

Query: 1285 LLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
             LK K  TF +F   +  I+  T K++K L T+N   FC+  FD+
Sbjct: 417  FLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDD 461


>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Erythranthe guttatus]
          Length = 598

 Score =  219 bits (557), Expect = 5e-54
 Identities = 119/290 (41%), Positives = 174/290 (60%), Gaps = 4/290 (1%)
 Frame = +1

Query: 562  DSVELNLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVIMCNNLTCKVDGIDDI 741
            +SV  +LSE    ++W+LDS  S+H+   RE F    +     V + +     V+GI  +
Sbjct: 6    NSVLASLSE----NEWLLDSACSYHMTPRREVFSDYVQMKNCGVTLADGTMIVVNGIGTV 61

Query: 742  SVKFNNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALVICKSMKR 921
             +KF +G +LTLK VR++P ++ NLI+   LE+ G  G   +  + + K +  + K+++ 
Sbjct: 62   CLKFVSGSVLTLKNVRHVPTLSHNLISCAVLEDDGFRGDWGDGCMNIMKGSRYLFKALRM 121

Query: 922  NGIYVTVEEVIKNSSFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPF 1101
              +YV   E    SS S++      +  WH  L H+SNK L +L++   FG D VS +  
Sbjct: 122  GNMYVCSAE----SSASMNVVQNDLSELWHKGLGHMSNKWLSILHKNQYFGNDKVSSVTL 177

Query: 1102 CDHCVLGKQHKLSF----SSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSK 1269
            CD C+LGKQ  + F    S  + +   IL+Y+H+D+WGP S PT GG RYFLSIIDDYS+
Sbjct: 178  CDSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSR 237

Query: 1270 RVWIFLLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
            +V++FLLK KS  FD F   +  IEN TGK+IK L T+N +EFCN+EFDN
Sbjct: 238  KVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDN 287


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  219 bits (557), Expect = 5e-54
 Identities = 122/345 (35%), Positives = 192/345 (55%), Gaps = 4/345 (1%)
 Frame = +1

Query: 397  GSKKCYDCGKTSHFIKDCYKEKNKQKENKRDEVNLVSSNSDLDPSEVYVLINSVDDSVEL 576
            G K C  C K +HFI++C+K +NK+K     + ++V+S  + D  +  V+      S + 
Sbjct: 232  GKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHD- 290

Query: 577  NLSEKSHLHKWILDSGASFHVISYREWFETLHESDLGHVI-MCNNLTCKVDGIDDISVKF 753
                     +WILD+  SFH+   R+WF +        V+ M ++   ++ GI  + +K 
Sbjct: 291  ---------EWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKT 341

Query: 754  NNGCMLTLKGVRYIPEMTRNLIAVGELEEMGLIGKIENKMLKMTK*ALV-ICKSMKRNGI 930
            ++G   TLK VR+IP M RNLI++  L+  G        ++K++K +LV +   M    +
Sbjct: 342  HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 401

Query: 931  YVTVEEVIKNS--SFSVSSANTGDTHKWHGRLAHVSNKGLKLLNEKGVFGKDCVSDMPFC 1104
            YV     +  S  + +V+      T+ WH RL H+S  G+  L ++ +       +M FC
Sbjct: 402  YVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 461

Query: 1105 DHCVLGKQHKLSFSSGVHKTNRILDYVHSDLWGPASNPTLGGKRYFLSIIDDYSKRVWIF 1284
            +HCV GK  ++ F++ VH+T  ILDYVH+DLWGP+  P+LGG RY L+IIDDYS++ W +
Sbjct: 462  EHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPY 521

Query: 1285 LLKDKSGTFDSFNN*RKRIENITGKKIKFLHTNNKLEFCNVEFDN 1419
             LK K  TF +F   +  IE  T K++K L T+N  EFC+  FD+
Sbjct: 522  FLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDD 566