BLASTX nr result

ID: Forsythia22_contig00017368 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00017368
         (655 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHG04362.1| DEAD-box ATP-dependent RNA helicase 56 [Gossypium...    73   5e-13
ref|XP_011459188.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    77   6e-12
ref|XP_008367922.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    69   2e-09
emb|CDY51111.1| BnaCnng20140D [Brassica napus]                         62   3e-07

>gb|KHG04362.1| DEAD-box ATP-dependent RNA helicase 56 [Gossypium arboreum]
          Length = 301

 Score = 72.8 bits (177), Expect(2) = 5e-13
 Identities = 34/47 (72%), Positives = 37/47 (78%)
 Frame = -3

Query: 143 FTSCTIIFRRAPNMLYCDISSLQPMEIYVDDEAKLTLHGLVQHYIKL 3
           F   +I  R+  NM+YC I S QPMEIYVDDEAKLTLHGLVQHYIKL
Sbjct: 24  FVLDSIFLRKLANMIYCHICSFQPMEIYVDDEAKLTLHGLVQHYIKL 70



 Score = 28.5 bits (62), Expect(2) = 5e-13
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 201 LQGDESDGPQPRFWGRSSVIHFV 133
           LQG +SDGP+ +    +S+IHFV
Sbjct: 3   LQGGKSDGPESQIKRCASIIHFV 25


>ref|XP_011459188.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2
           [Fragaria vesca subsp. vesca]
          Length = 462

 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 35/38 (92%), Positives = 36/38 (94%)
 Frame = -3

Query: 116 RAPNMLYCDISSLQPMEIYVDDEAKLTLHGLVQHYIKL 3
           RAPNM+YCDI S QPMEIYVDDEAKLTLHGLVQHYIKL
Sbjct: 268 RAPNMIYCDICSFQPMEIYVDDEAKLTLHGLVQHYIKL 305


>ref|XP_008367922.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Malus
           domestica]
          Length = 146

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = -3

Query: 104 MLYCDISSLQPMEIYVDDEAKLTLHGLVQHYIKL 3
           M+YCDI S QPMEIYVDDEAKLTLHGLVQHYIKL
Sbjct: 1   MIYCDICSFQPMEIYVDDEAKLTLHGLVQHYIKL 34


>emb|CDY51111.1| BnaCnng20140D [Brassica napus]
          Length = 249

 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 31/43 (72%), Positives = 32/43 (74%)
 Frame = -3

Query: 131 TIIFRRAPNMLYCDISSLQPMEIYVDDEAKLTLHGLVQHYIKL 3
           T+  R A N L  DI S QPMEIYVDDEAKL LHG VQHYIKL
Sbjct: 32  TVKKRLAANTLSSDICSFQPMEIYVDDEAKLALHGFVQHYIKL 74


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